Hus1 (HUS1 checkpoint clamp component) - Rat Genome Database

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Gene: Hus1 (HUS1 checkpoint clamp component) Rattus norvegicus
Analyze
Symbol: Hus1
Name: HUS1 checkpoint clamp component
RGD ID: 1591976
Description: Predicted to be involved in several processes, including DNA integrity checkpoint signaling; DNA metabolic process; and cellular response to ionizing radiation. Predicted to act upstream of or within DNA damage checkpoint signaling and response to UV. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Predicted to be active in site of double-strand break. Orthologous to human HUS1 (HUS1 checkpoint clamp component); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: checkpoint protein HUS1; HUS1 checkpoint homolog; HUS1 checkpoint homolog (S. pombe); Hus1 homolog; LOC498411; similar to Hus1 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81487,902,458 - 87,917,221 (-)NCBIGRCr8
mRatBN7.21483,688,702 - 83,703,466 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,688,708 - 83,703,442 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1488,078,925 - 88,093,608 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01489,318,825 - 89,333,508 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01485,785,994 - 85,800,673 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01489,194,086 - 89,208,825 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1489,194,092 - 89,208,825 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01488,991,462 - 89,006,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,527,997 - 89,542,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1482,724,930 - 82,739,682 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10846170   PMID:11790307   PMID:12529385   PMID:12676962   PMID:15919177   PMID:16278671   PMID:21659603  


Genomics

Comparative Map Data
Hus1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81487,902,458 - 87,917,221 (-)NCBIGRCr8
mRatBN7.21483,688,702 - 83,703,466 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,688,708 - 83,703,442 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1488,078,925 - 88,093,608 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01489,318,825 - 89,333,508 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01485,785,994 - 85,800,673 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01489,194,086 - 89,208,825 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1489,194,092 - 89,208,825 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01488,991,462 - 89,006,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,527,997 - 89,542,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1482,724,930 - 82,739,682 (-)NCBICelera
Cytogenetic Map14q21NCBI
HUS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38747,963,288 - 47,979,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl747,963,288 - 47,979,615 (-)EnsemblGRCh38hg38GRCh38
GRCh37748,002,885 - 48,019,212 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36747,970,308 - 47,985,771 (-)NCBINCBI36Build 36hg18NCBI36
Build 34747,777,022 - 47,792,486NCBI
Celera748,103,051 - 48,118,524 (-)NCBICelera
Cytogenetic Map7p12.3NCBI
HuRef747,888,421 - 47,904,763 (-)NCBIHuRef
CHM1_1748,006,647 - 48,022,950 (-)NCBICHM1_1
T2T-CHM13v2.0748,125,574 - 48,141,862 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2748,042,830 - 48,059,174 (-)NCBI
Hus1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39118,943,137 - 8,961,240 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl118,943,137 - 8,961,191 (-)EnsemblGRCm39 Ensembl
GRCm38118,993,137 - 9,011,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl118,993,137 - 9,011,191 (-)EnsemblGRCm38mm10GRCm38
MGSCv37118,893,145 - 8,911,140 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36118,893,145 - 8,911,140 (-)NCBIMGSCv36mm8
Celera119,425,958 - 9,443,972 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map115.74NCBI
Hus1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554565,465,182 - 5,474,303 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554565,465,180 - 5,476,380 (+)NCBIChiLan1.0ChiLan1.0
HUS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2652,827,109 - 52,856,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17101,151,875 - 101,181,134 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0748,606,848 - 48,622,194 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1748,714,028 - 48,731,038 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,714,668 - 48,731,005 (-)Ensemblpanpan1.1panPan2
HUS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11693,596 - 104,908 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1693,626 - 125,597 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha16865,769 - 879,528 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01671,091 - 84,888 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2475,012 - 112,036 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11665,830 - 79,607 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.016811 - 14,587 (+)NCBIUNSW_CanFamBas_1.0
Hus1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,172,833 - 103,202,691 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647822,400,111 - 22,414,115 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647822,393,952 - 22,414,349 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HUS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,522,998 - 48,534,682 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,522,914 - 48,539,267 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HUS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12110,826,799 - 10,841,579 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2110,826,846 - 10,841,382 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606211,380,792 - 11,397,402 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hus1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247405,606,129 - 5,618,092 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247405,606,828 - 5,617,848 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hus1
83 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:259
Interacting mature miRNAs:336
Transcripts:ENSRNOT00000006852
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat

Markers in Region
AF076845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21483,692,336 - 83,692,430 (+)MAPPERmRatBN7.2
Rnor_6.01489,197,721 - 89,197,814NCBIRnor6.0
Rnor_5.01488,995,097 - 88,995,190UniSTSRnor5.0
RGSC_v3.41489,531,626 - 89,531,719UniSTSRGSC3.4
Celera1482,728,559 - 82,728,652UniSTS
Cytogenetic Map14q21UniSTS
RH130096  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21483,688,753 - 83,688,934 (+)MAPPERmRatBN7.2
Rnor_6.01489,194,138 - 89,194,318NCBIRnor6.0
Rnor_5.01488,991,514 - 88,991,694UniSTSRnor5.0
RGSC_v3.41489,528,043 - 89,528,223UniSTSRGSC3.4
Celera1482,724,976 - 82,725,156UniSTS
RH 3.4 Map14620.5UniSTS
Cytogenetic Map14q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 12 20 14 13 14 54 35 36 11
Low 31 37 27 6 27 8 11 20 5 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006852   ⟹   ENSRNOP00000006852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1483,688,708 - 83,703,442 (-)Ensembl
Rnor_6.0 Ensembl1489,194,092 - 89,208,825 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091671   ⟹   ENSRNOP00000072823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1489,194,113 - 89,208,813 (-)Ensembl
RefSeq Acc Id: NM_001109092   ⟹   NP_001102562
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,902,458 - 87,917,134 (-)NCBI
mRatBN7.21483,688,702 - 83,703,379 (-)NCBI
Rnor_6.01489,194,092 - 89,208,825 (-)NCBI
Rnor_5.01488,991,462 - 89,006,201 (-)NCBI
RGSC_v3.41489,527,997 - 89,542,730 (-)RGD
Celera1482,724,930 - 82,739,682 (-)RGD
Sequence:
RefSeq Acc Id: NM_001394782   ⟹   NP_001381711
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,902,458 - 87,917,038 (-)NCBI
mRatBN7.21483,688,702 - 83,703,283 (-)NCBI
RefSeq Acc Id: XM_039092298   ⟹   XP_038948226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,902,458 - 87,917,221 (-)NCBI
mRatBN7.21483,688,702 - 83,703,466 (-)NCBI
RefSeq Acc Id: XM_039092300   ⟹   XP_038948228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,908,605 - 87,917,221 (-)NCBI
mRatBN7.21483,694,845 - 83,703,466 (-)NCBI
RefSeq Acc Id: XM_063273479   ⟹   XP_063129549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,902,458 - 87,917,102 (-)NCBI
RefSeq Acc Id: XM_063273480   ⟹   XP_063129550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,908,677 - 87,917,221 (-)NCBI
RefSeq Acc Id: XM_063273481   ⟹   XP_063129551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,908,677 - 87,917,221 (-)NCBI
RefSeq Acc Id: XR_005493003
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,908,601 - 87,917,221 (-)NCBI
mRatBN7.21483,694,845 - 83,703,466 (-)NCBI
RefSeq Acc Id: XR_005493004
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,908,677 - 87,917,221 (-)NCBI
mRatBN7.21483,694,111 - 83,703,466 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102562   ⟸   NM_001109092
- Peptide Label: isoform 1
- UniProtKB: D3ZNA8 (UniProtKB/TrEMBL),   A6KJ83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006852   ⟸   ENSRNOT00000006852
RefSeq Acc Id: ENSRNOP00000072823   ⟸   ENSRNOT00000091671
RefSeq Acc Id: XP_038948226   ⟸   XM_039092298
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948228   ⟸   XM_039092300
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001381711   ⟸   NM_001394782
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063129549   ⟸   XM_063273479
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129551   ⟸   XM_063273481
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129550   ⟸   XM_063273480
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZNA8-F1-model_v2 AlphaFold D3ZNA8 1-280 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699492
Promoter ID:EPDNEW_R10011
Type:multiple initiation site
Name:Hus1_1
Description:HUS1 checkpoint clamp component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01489,208,762 - 89,208,822EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591976 AgrOrtholog
BioCyc Gene G2FUF-15024 BioCyc
Ensembl Genes ENSRNOG00000005141 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006852 ENTREZGENE
  ENSRNOT00000006852.8 UniProtKB/TrEMBL
Gene3D-CATH 3.70.10.10 UniProtKB/TrEMBL
InterPro Cell_cycle_HUS1 UniProtKB/TrEMBL
  DNA_clamp_sf UniProtKB/TrEMBL
  Hus1 UniProtKB/TrEMBL
KEGG Report rno:498411 UniProtKB/TrEMBL
NCBI Gene 498411 ENTREZGENE
PANTHER CHECKPOINT PROTEIN HUS1 UniProtKB/TrEMBL
  MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 UniProtKB/TrEMBL
Pfam Hus1 UniProtKB/TrEMBL
PhenoGen Hus1 PhenoGen
PIRSF Cell_cycle_HUS1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005141 RatGTEx
Superfamily-SCOP DNA clamp UniProtKB/TrEMBL
UniProt A6KJ83 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNA8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-01 Hus1  HUS1 checkpoint clamp component  Hus1  HUS1 checkpoint homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Hus1  HUS1 checkpoint homolog (S. pombe)  LOC498411  similar to Hus1 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC498411  similar to Hus1 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL