Stpg2 (sperm-tail PG-rich repeat containing 2) - Rat Genome Database

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Gene: Stpg2 (sperm-tail PG-rich repeat containing 2) Rattus norvegicus
Analyze
Symbol: Stpg2
Name: sperm-tail PG-rich repeat containing 2
RGD ID: 1591946
Description: Orthologous to human STPG2 (sperm tail PG-rich repeat containing 2); INTERACTS WITH 17beta-estradiol; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical LOC499719; hypothetical protein LOC499719; LOC499719; sperm-tail PG-rich repeat-containing protein 2; uncharacterized protein C4orf37 homolog
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82230,434,014 - 230,958,932 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2230,437,681 - 230,959,218 (+)EnsemblGRCr8
mRatBN7.22227,764,266 - 228,285,664 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,764,353 - 228,285,663 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2235,502,910 - 236,028,975 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02233,402,677 - 233,928,748 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02228,267,285 - 228,793,353 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,521,604 - 245,044,919 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,521,699 - 245,044,918 (+)Ensemblrn6Rnor6.0
Rnor_5.02263,279,612 - 263,408,992 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.02263,571,889 - 263,576,774 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.02263,050,120 - 263,176,297 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42236,793,487 - 237,340,054 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2219,909,155 - 220,399,541 (+)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Stpg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82230,434,014 - 230,958,932 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2230,437,681 - 230,959,218 (+)EnsemblGRCr8
mRatBN7.22227,764,266 - 228,285,664 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,764,353 - 228,285,663 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2235,502,910 - 236,028,975 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02233,402,677 - 233,928,748 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02228,267,285 - 228,793,353 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,521,604 - 245,044,919 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,521,699 - 245,044,918 (+)Ensemblrn6Rnor6.0
Rnor_5.02263,279,612 - 263,408,992 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.02263,571,889 - 263,576,774 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.02263,050,120 - 263,176,297 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42236,793,487 - 237,340,054 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2219,909,155 - 220,399,541 (+)NCBICelera
Cytogenetic Map2q44NCBI
STPG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38497,441,249 - 98,143,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl497,184,093 - 98,143,476 (-)Ensemblhg38GRCh38
GRCh37498,480,023 - 99,064,627 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36498,699,058 - 99,283,414 (-)NCBIBuild 36Build 36hg18NCBI36
Celera495,774,867 - 96,359,061 (-)NCBICelera
Cytogenetic Map4q22.3-q23NCBI
HuRef494,217,293 - 94,801,714 (-)NCBIHuRef
CHM1_1498,456,801 - 99,041,326 (-)NCBICHM1_1
T2T-CHM13v2.04100,756,071 - 101,458,472 (-)NCBIT2T-CHM13v2.0
Stpg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,910,953 - 139,415,185 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,911,455 - 139,416,060 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383139,205,893 - 139,710,299 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3139,205,694 - 139,710,299 (+)Ensemblmm10GRCm38
MGSCv373138,868,857 - 139,373,263 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363139,143,280 - 139,647,686 (+)NCBIMGSCv36mm8
Celera3145,638,723 - 146,129,093 (+)NCBICelera
Cytogenetic Map3H1NCBI
cM Map364.68NCBI
STPG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2395,500,927 - 96,219,482 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1495,778,538 - 96,497,062 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0489,564,946 - 90,554,537 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14100,256,954 - 101,219,362 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4100,622,070 - 101,219,065 (-)EnsemblpanPan2panpan1.1
STPG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13219,897,256 - 20,430,716 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3219,897,256 - 20,431,898 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3221,505,411 - 22,041,581 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03220,076,573 - 20,614,414 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3220,117,245 - 20,614,441 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13220,045,452 - 20,583,673 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03219,870,374 - 20,408,281 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03219,488,773 - 20,020,578 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stpg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530121,297,834 - 21,803,579 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936717515,890 - 804,003 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936717515,890 - 1,016,932 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STPG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8122,115,074 - 122,441,584 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18122,115,046 - 122,442,122 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28131,181,377 - 131,222,749 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STPG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1745,648,743 - 46,376,385 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603724,041,301 - 24,714,778 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stpg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248165,644,540 - 5,652,289 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Stpg2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1319,715,779 - 19,944,332 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stpg2
3919 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:83
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000029382
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2212145502231732847Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat

Markers in Region
D2Got162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22228,270,443 - 228,270,671 (+)MAPPERmRatBN7.2
Rnor_6.02245,029,699 - 245,029,926NCBIRnor6.0
Rnor_5.02263,561,554 - 263,561,781UniSTSRnor5.0
RGSC_v3.42237,324,834 - 237,325,061RGDRGSC3.4
RGSC_v3.42237,324,834 - 237,325,061UniSTSRGSC3.4
Celera2220,384,399 - 220,384,626UniSTS
RGSC_v3.12237,311,574 - 237,311,801RGD
Cytogenetic Map2q44UniSTS
D2Wox35  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82230,628,399 - 230,628,534 (+)Marker Load Pipeline
Rnor_6.02244,719,535 - 244,719,662NCBIRnor6.0
Celera2220,080,002 - 220,080,134UniSTS
RH 3.4 Map21576.4UniSTS
RH 3.4 Map21576.4RGD
Cytogenetic Map2q44UniSTS
AU048335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22228,082,115 - 228,082,380 (+)MAPPERmRatBN7.2
Rnor_6.02244,847,705 - 244,847,969NCBIRnor6.0
Rnor_5.02263,379,214 - 263,379,478UniSTSRnor5.0
RGSC_v3.42237,129,744 - 237,130,008UniSTSRGSC3.4
Celera2220,201,951 - 220,202,217UniSTS
Cytogenetic Map2q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
4 3 3 111 50 45 21 15 21 2 104 38 5 94 38 73 24 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000029382   ⟹   ENSRNOP00000031925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2230,437,690 - 230,959,218 (+)Ensembl
mRatBN7.2 Ensembl2227,764,353 - 228,285,663 (+)Ensembl
Rnor_6.0 Ensembl2244,521,699 - 245,044,918 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094402   ⟹   ENSRNOP00000081550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2230,437,681 - 230,958,931 (+)Ensembl
mRatBN7.2 Ensembl2227,764,353 - 228,285,407 (+)Ensembl
RefSeq Acc Id: NM_001100993   ⟹   NP_001094463
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,437,690 - 230,958,932 (+)NCBI
mRatBN7.22227,764,353 - 228,285,664 (+)NCBI
Rnor_6.02244,521,699 - 245,044,919 (+)NCBI
Rnor_5.02263,571,889 - 263,576,774 (+)NCBI
Rnor_5.02263,050,120 - 263,176,297 (+)NCBI
Rnor_5.02263,279,612 - 263,408,992 (+)NCBI
RGSC_v3.42236,793,487 - 237,340,054 (+)RGD
Celera2219,909,155 - 220,399,541 (+)RGD
Sequence:
RefSeq Acc Id: XM_008761520   ⟹   XP_008759742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,434,014 - 230,955,312 (+)NCBI
mRatBN7.22227,764,266 - 228,281,667 (+)NCBI
Rnor_6.02244,521,604 - 245,040,468 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591047   ⟹   XP_017446536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,434,014 - 230,958,932 (+)NCBI
mRatBN7.22227,764,266 - 228,285,391 (+)NCBI
Rnor_6.02244,521,604 - 245,044,731 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001094463   ⟸   NM_001100993
- UniProtKB: A1A5R9 (UniProtKB/Swiss-Prot),   A6HW45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759742   ⟸   XM_008761520
- Peptide Label: isoform X1
- UniProtKB: A6HW45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446536   ⟸   XM_017591047
- Peptide Label: isoform X2
- UniProtKB: A1A5R9 (UniProtKB/Swiss-Prot),   A6HW45 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000031925   ⟸   ENSRNOT00000029382
Ensembl Acc Id: ENSRNOP00000081550   ⟸   ENSRNOT00000094402

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1A5R9-F1-model_v2 AlphaFold A1A5R9 1-563 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591946 AgrOrtholog
BioCyc Gene G2FUF-51030 BioCyc
Ensembl Genes ENSRNOG00000023457 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029382 ENTREZGENE
  ENSRNOT00000029382.5 UniProtKB/Swiss-Prot
  ENSRNOT00000094402 ENTREZGENE
  ENSRNOT00000094402.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134244 IMAGE-MGC_LOAD
InterPro CIMAP UniProtKB/Swiss-Prot
  SHIPPO-rpt UniProtKB/Swiss-Prot
KEGG Report rno:499719 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156807 IMAGE-MGC_LOAD
NCBI Gene 499719 ENTREZGENE
PANTHER SHIPPO-1-RELATED UniProtKB/Swiss-Prot
  SPERM-TAIL PG-RICH REPEAT-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot
Pfam SHIPPO-rpt UniProtKB/Swiss-Prot
PhenoGen Stpg2 PhenoGen
RatGTEx ENSRNOG00000023457 RatGTEx
UniProt A1A5R9 ENTREZGENE
  A6HW45 ENTREZGENE, UniProtKB/TrEMBL
  STPG2_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-18 Stpg2  sperm-tail PG-rich repeat containing 2  LOC499719  hypothetical LOC499719  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC499719  hypothetical LOC499719      Symbol and Name status set to provisional 70820 PROVISIONAL