Cox6b2 (cytochrome c oxidase subunit 6B2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cox6b2 (cytochrome c oxidase subunit 6B2) Rattus norvegicus
Analyze
Symbol: Cox6b2
Name: cytochrome c oxidase subunit 6B2
RGD ID: 1591896
Description: Predicted to be involved in oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrial crista. Orthologous to human COX6B2 (cytochrome c oxidase subunit 6B2); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: COX VIb-2; cytochrome c oxidase subunit VIb polypeptide 2; cytochrome c oxidase subunit VIb testes-specific isoform; cytochrome c oxidase subunit VIb testes-specific isoform precursor; cytochrome c oxidase subunit VIb, testis-specific isoform
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,122,871 - 78,124,096 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl178,122,453 - 78,124,094 (+)EnsemblGRCr8
mRatBN7.2169,094,009 - 69,095,312 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx174,439,122 - 74,440,347 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0183,003,425 - 83,004,650 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,152,185 - 76,153,410 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,661,099 - 72,662,436 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,661,211 - 72,662,434 (+)Ensemblrn6Rnor6.0
Rnor_5.0175,873,172 - 75,874,397 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4167,810,527 - 67,811,752 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,029,202 - 68,030,427 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
alpha-Zearalanol  (EXP)
amiodarone  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
chlorpyrifos  (ISO)
clofibrate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethylparaben  (ISO)
fenofibrate  (ISO)
fenvalerate  (EXP)
indometacin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
Moniliformin  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nitrofen  (EXP)
okadaic acid  (ISO)
oxybenzone  (EXP)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
tetrachloromethane  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12874793   PMID:18614015   PMID:34800366  


Genomics

Comparative Map Data
Cox6b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,122,871 - 78,124,096 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl178,122,453 - 78,124,094 (+)EnsemblGRCr8
mRatBN7.2169,094,009 - 69,095,312 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx174,439,122 - 74,440,347 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0183,003,425 - 83,004,650 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,152,185 - 76,153,410 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,661,099 - 72,662,436 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,661,211 - 72,662,434 (+)Ensemblrn6Rnor6.0
Rnor_5.0175,873,172 - 75,874,397 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4167,810,527 - 67,811,752 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,029,202 - 68,030,427 (-)NCBICelera
Cytogenetic Map1q12NCBI
COX6B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,349,704 - 55,354,719 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,349,306 - 55,354,719 (-)Ensemblhg38GRCh38
GRCh371955,861,072 - 55,866,087 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,552,882 - 60,557,994 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341960,552,485 - 60,557,876NCBI
Celera1952,902,036 - 52,907,148 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,183,370 - 52,188,482 (-)NCBIHuRef
CHM1_11955,854,890 - 55,860,002 (-)NCBICHM1_1
T2T-CHM13v2.01958,445,210 - 58,450,225 (-)NCBIT2T-CHM13v2.0
Cox6b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,754,791 - 4,756,093 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,754,791 - 4,756,093 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3874,751,792 - 4,753,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,751,792 - 4,753,094 (-)Ensemblmm10GRCm38
MGSCv3774,703,396 - 4,704,696 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3674,354,881 - 4,356,181 (-)NCBIMGSCv36mm8
Celera74,481,918 - 4,483,218 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.75NCBI
LOC102023082
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955567890,846 - 891,675 (+)Ensembl
ChiLan1.0NW_004955567890,281 - 891,675 (+)NCBIChiLan1.0ChiLan1.0
LOC100983343
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,487,169 - 61,492,439 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,216,253 - 63,221,529 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,392,907 - 52,397,198 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,081,662 - 61,086,080 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,083,744 - 61,086,080 (-)EnsemblpanPan2panpan1.1
LOC119870901
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1102,384,470 - 102,385,941 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01102,980,956 - 102,982,434 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,980,651 - 102,983,647 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,618,227 - 102,619,704 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,330,552 - 102,331,728 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,093,516 - 103,094,984 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
COX6B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,530,354 - 59,531,814 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1659,530,419 - 59,531,770 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COX6B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,955,935 - 47,957,558 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045590,420 - 595,193 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101706975
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,943,057 - 1,944,078 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248321,943,006 - 1,944,060 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116894541
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12177,327,392 - 177,328,643 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cox6b2
4 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:93
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000033197
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 88 87 56 82 56 6 328 177 7 141 71 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000033197   ⟹   ENSRNOP00000035591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl172,661,211 - 72,662,434 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127328   ⟹   ENSRNOP00000107965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl178,122,453 - 78,124,093 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134306   ⟹   ENSRNOP00000110775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl178,122,862 - 78,124,094 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159862   ⟹   ENSRNOP00000107070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl178,122,453 - 78,123,934 (+)Ensembl
RefSeq Acc Id: NM_001039085   ⟹   NP_001034174
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8178,122,871 - 78,124,096 (+)NCBI
mRatBN7.2169,094,085 - 69,095,310 (+)NCBI
Rnor_6.0172,661,211 - 72,662,436 (+)NCBI
Rnor_5.0175,873,172 - 75,874,397 (-)NCBI
RGSC_v3.4167,810,527 - 67,811,752 (+)RGD
Celera168,029,202 - 68,030,427 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001034174 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAN46752 (Get FASTA)   NCBI Sequence Viewer  
  EDL75852 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107965
GenBank Protein Q6YFQ1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034174   ⟸   NM_001039085
- UniProtKB: Q6YFQ1 (UniProtKB/Swiss-Prot),   A6KNN4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035591   ⟸   ENSRNOT00000033197
Ensembl Acc Id: ENSRNOP00000107965   ⟸   ENSRNOT00000127328
Ensembl Acc Id: ENSRNOP00000107070   ⟸   ENSRNOT00000159862
Ensembl Acc Id: ENSRNOP00000110775   ⟸   ENSRNOT00000134306
Protein Domains
CHCH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6YFQ1-F1-model_v2 AlphaFold Q6YFQ1 1-88 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689698
Promoter ID:EPDNEW_R223
Type:multiple initiation site
Name:Cox6b2_1
Description:cytochrome c oxidase subunit 6B2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0172,661,206 - 72,661,266EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591896 AgrOrtholog
BioCyc Gene G2FUF-60857 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
  PWY-7279 [aerobic respiration II (cytochrome c) (yeast)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
  PWY-7279 BioCyc
Ensembl Genes ENSRNOG00000038616 Ensembl
  ENSRNOG00000077802 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000127328 ENTREZGENE
Gene3D-CATH 1.10.10.140 UniProtKB/Swiss-Prot
InterPro COX6B-like UniProtKB/Swiss-Prot
  Cyt_c_oxidase_su6B UniProtKB/Swiss-Prot
  Cyt_c_oxidase_su6B_sf UniProtKB/Swiss-Prot
KEGG Report rno:654441 UniProtKB/Swiss-Prot
NCBI Gene 654441 ENTREZGENE
PANTHER PTHR11387 UniProtKB/Swiss-Prot
Pfam COX6B UniProtKB/Swiss-Prot
PhenoGen Cox6b2 PhenoGen
PIRSF Cyt_c_oxidase_6B UniProtKB/Swiss-Prot
PROSITE CHCH UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000038616 RatGTEx
  ENSRNOG00000077802 RatGTEx
Superfamily-SCOP SSF47694 UniProtKB/Swiss-Prot
UniProt A0ABK0LYF9_RAT UniProtKB/TrEMBL
  A0ABK0M5C6_RAT UniProtKB/TrEMBL
  A6KNN3_RAT UniProtKB/TrEMBL
  A6KNN4 ENTREZGENE, UniProtKB/TrEMBL
  CX6B2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-02 Cox6b2  cytochrome c oxidase subunit 6B2  Cox6b2  cytochrome c oxidase subunit VIb polypeptide 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Cox6b2  cytochrome c oxidase subunit VIb polypeptide 2  Cox6b2  cytochrome c oxidase subunit VIb testes-specific isoform precursor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 Cox6b2  cytochrome c oxidase subunit VIb testes-specific isoform precursor      Symbol and Name status set to provisional 70820 PROVISIONAL