Arrdc5 (arrestin domain containing 5)

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Gene: Arrdc5 (arrestin domain containing 5) Rattus norvegicus

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Symbol:

Arrdc5

Name:

arrestin domain containing 5

RGD ID:

1591748

Description:

Predicted to be involved in protein transport. Predicted to be active in endosome and plasma membrane. Orthologous to human ARRDC5 (arrestin domain containing 5); INTERACTS WITH bisphenol A; lead nitrate; aflatoxin B1 (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

arrestin domain-containing protein 5; LOC680452; similar to T12D8.4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARRDC5 (arrestin domain containing 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Arrdc5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arrdc5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARRDC5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARRDC5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arrdc5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARRDC5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARRDC5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arrdc5 (arrestin domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARRDC5 (arrestin domain containing 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arrdc5 (arrestin domain containing 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arrdc1a (arrestin domain containing 1a)	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG14696	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG2993	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	RIM8	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	arrd-9	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ROG3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ROD1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG18268	Alliance	DIOPT (PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG18744	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG3014	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Leash	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ALY2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ECM21	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CSR2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ALY1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	LDB19	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	1,213,794 - 1,221,188 (-)	NCBI		GRCr8
mRatBN7.2	9	1,126,644 - 1,132,736 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	1,126,644 - 1,132,816 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	1,572,320 - 1,578,413 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	6,920,310 - 6,926,401 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	5,877,364 - 5,883,457 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	10,760,113 - 10,766,199 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	10,760,113 - 10,766,199 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	9,751,885 - 9,757,867 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	9	7,377,403 - 7,383,399 (+)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Dibutyl phosphate (ISO)

lead nitrate (EXP)

lipopolysaccharide (ISO)

paracetamol (ISO)

potassium dichromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium fluoride (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein transport (IBA)

Cellular Component

cytoplasm (IBA)

endosome (IBA)

plasma membrane (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Arrdc5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	1,213,794 - 1,221,188 (-)	NCBI		GRCr8
mRatBN7.2	9	1,126,644 - 1,132,736 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	1,126,644 - 1,132,816 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	1,572,320 - 1,578,413 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	6,920,310 - 6,926,401 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	5,877,364 - 5,883,457 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	10,760,113 - 10,766,199 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	10,760,113 - 10,766,199 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	9,751,885 - 9,757,867 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	9	7,377,403 - 7,383,399 (+)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

ARRDC5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	4,890,437 - 4,916,820 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	4,890,437 - 4,902,948 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	4,890,449 - 4,902,908 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	4,841,449 - 4,853,879 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	4,827,460 - 4,839,887 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	4,652,373 - 4,664,861 (-)	NCBI		HuRef
CHM1_1	19	4,890,053 - 4,902,743 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	4,875,655 - 4,902,266 (-)	NCBI		T2T-CHM13v2.0

Arrdc5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	56,601,111 - 56,607,262 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	56,601,111 - 56,607,286 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	56,294,111 - 56,300,286 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	56,294,111 - 56,300,286 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	56,433,534 - 56,439,709 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	55,927,820 - 55,933,995 (-)	NCBI		MGSCv36	mm8
Celera	17	60,647,948 - 60,654,123 (-)	NCBI		Celera
Cytogenetic Map	17	D	NCBI
cM Map	17	29.26	NCBI

Arrdc5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	4,161,222 - 4,171,830 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	4,161,144 - 4,166,968 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARRDC5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	9,279,244 - 9,302,270 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	8,508,640 - 8,531,582 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	3,908,149 - 3,920,239 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ARRDC5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	54,894,127 - 54,905,935 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	54,893,935 - 54,905,934 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	54,618,503 - 54,630,313 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	55,548,639 - 55,560,436 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	55,548,441 - 55,560,435 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	54,609,915 - 54,621,718 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	55,090,635 - 55,102,431 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	55,288,509 - 55,300,323 (+)	NCBI		UU_Cfam_GSD_1.0

Arrdc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	214,975,581 - 214,982,249 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,852,574 - 2,859,142 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,851,711 - 2,859,142 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARRDC5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	73,935,721 - 73,950,575 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	73,935,538 - 73,950,586 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ARRDC5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	4,578,953 - 4,584,429 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666081	3,550,425 - 3,563,766 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arrdc5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	4,934,137 - 4,939,114 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	4,934,096 - 4,939,147 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arrdc5
11 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	88
Count of miRNA genes:	81
Interacting mature miRNAs:	83
Transcripts:	ENSRNOT00000073054
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
10054141	Gmadr4	Adrenal mass QTL 4	2.45	0.0074	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	9	1	14209783	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
5	11	17	46	38	34	7	15	7	6	82	55	26	7	36	27

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000073054 ⟹ ENSRNOP00000064476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	1,126,644 - 1,132,816 (-)	Ensembl
Rnor_6.0 Ensembl	9	10,760,113 - 10,766,199 (+)	Ensembl

RefSeq Acc Id:

NM_001109408 ⟹ NP_001102878

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	1,213,799 - 1,219,890 (-)	NCBI
mRatBN7.2	9	1,126,644 - 1,132,736 (-)	NCBI
Rnor_6.0	9	10,760,113 - 10,766,199 (+)	NCBI
Rnor_5.0	9	9,751,885 - 9,757,867 (+)	NCBI
Celera	9	7,377,403 - 7,383,399 (+)	RGD

Sequence:

show sequence

ATGTCTGTGGTGAAGTCCATCGAGGTAGTGCTGCCCCAAGATGCAGTCTACCTGGCCGGCTCGA
ACATAGACGGGCAGGTGGTCCTCACCCTCAACAGCACCCTCGTGGACCCCGTCGTGAAGGTGGA
GCTTGTTGGTAGGGGTTATGTTGAGTGGAATGAAGAAATCGGAGAGACCCGTGATTATAGTAGA
GATGTTATTTGCAATAATAAGGCAGATTATGTACATAAAACAAAAACATTCCCAATAAAAGATA
ATTGGTTAAGGGCAGGCAGCCACACCTTTGACTTCCATTTCAACTTACCTCCCAGGCTCCCATC
CACCTTCAACAGTAAGATCGGCCACATCTCCTACTTTGTGCAGGCCCTGTGCATGGGCCGGGAG
CATATCCTGGCCAAGAAGAGGCTGTACCTGCTGGTCCAAGGGATTTCTGAATTCCGCCAGCGGA
ATCTAAGTGAGAACCCACTGTCTGTAGAAGCTGAGAAGAAGGTGTCATACAACTGCTGCAGCCG
GGGCTGGGTGAGCTTGCATGTGCAGATGAGCAAGAACACCTTCGTGCCCGGCGAGAAGGTGACA
TTCACATCAGAGATCCGCAATCACACGGGCAAGTACATCAAGACTGTGGTGTTCGCCCTCTATG
CCCATGTGCAGTATGAGGGCTTCACGCCAAGTGCTGAGAGGCGCCGGCGGGCAGACAGCAGTGA
GTTGCTGCGACAGATGGCCAATGCACGGATTCCAGCTTTCAACAGCACCACAGTGGTTAGCGCC
TTCAACCTGCCCCTGGTTTTGTCTGTGAGCAGTGGCTCCCAGGAGAACGAGATCATGAGGACCA
GCTATGAGCTTGTAGTCACTATCCACCTCCCCTGGTCCTTGTCAACGGTCAAAGCCGGGCTCCC
CATAATCATCACCAGTGCCAGGGAAGACAAGGCCAACTGTCCCCAGGTGAATGAGTTACCATAT
GAGGATCATCTGGTTTGAGTGCCTGAACTTTAAATATTAAAAGCTTATTGTAAC

hide sequence

RefSeq Acc Id:

XM_063267722 ⟹ XP_063123792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	1,213,794 - 1,221,185 (-)	NCBI

RefSeq Acc Id:

XM_063267723 ⟹ XP_063123793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	1,213,794 - 1,221,188 (-)	NCBI

RefSeq Acc Id:

XM_063267724 ⟹ XP_063123794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	1,213,794 - 1,219,980 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102878	(Get FASTA)	NCBI Sequence Viewer
	XP_063123792	(Get FASTA)	NCBI Sequence Viewer
	XP_063123793	(Get FASTA)	NCBI Sequence Viewer
	XP_063123794	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83646	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064476.1

RefSeq Acc Id:

NP_001102878 ⟸ NM_001109408

- UniProtKB:

M0R521 (UniProtKB/TrEMBL), A6KQY8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVVKSIEVVLPQDAVYLAGSNIDGQVVLTLNSTLVDPVVKVELVGRGYVEWNEEIGETRDYSR
DVICNNKADYVHKTKTFPIKDNWLRAGSHTFDFHFNLPPRLPSTFNSKIGHISYFVQALCMGRE
HILAKKRLYLLVQGISEFRQRNLSENPLSVEAEKKVSYNCCSRGWVSLHVQMSKNTFVPGEKVT
FTSEIRNHTGKYIKTVVFALYAHVQYEGFTPSAERRRRADSSELLRQMANARIPAFNSTTVVSA
FNLPLVLSVSSGSQENEIMRTSYELVVTIHLPWSLSTVKAGLPIIITSAREDKANCPQVNELPY
EDHLV

hide sequence

Ensembl Acc Id:

ENSRNOP00000064476 ⟸ ENSRNOT00000073054

RefSeq Acc Id:	XP_063123793 ⟸ XM_063267723
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123792 ⟸ XM_063267722
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123794 ⟸ XM_063267724
- Peptide Label:	isoform X2

Protein Domains

Arrestin C-terminal-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R521-F1-model_v2	AlphaFold	M0R521	1-325	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696462

Promoter ID:

EPDNEW_R6987

Type:

initiation region

Name:

Arrdc5_1

Description:

arrestin domain containing 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	10,760,115 - 10,760,175	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1591748	AgrOrtholog
BioCyc Gene	G2FUF-28536	BioCyc
Ensembl Genes	ENSRNOG00000047223	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000073054.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.640	UniProtKB/TrEMBL
InterPro	Arrestin-like_N	UniProtKB/TrEMBL
	Arrestin_C	UniProtKB/TrEMBL
	Arrestin_C-like	UniProtKB/TrEMBL
	Arrestin_domain-protein	UniProtKB/TrEMBL
	Ig_E-set	UniProtKB/TrEMBL
KEGG Report	rno:680452	UniProtKB/TrEMBL
NCBI Gene	680452	ENTREZGENE
PANTHER	ARRESTIN DOMAIN CONTAINING PROTEIN	UniProtKB/TrEMBL
	ARRESTIN DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
Pfam	Arrestin_C	UniProtKB/TrEMBL
	Arrestin_N	UniProtKB/TrEMBL
PhenoGen	Arrdc5	PhenoGen
RatGTEx	ENSRNOG00000047223	RatGTEx
SMART	Arrestin_C	UniProtKB/TrEMBL
Superfamily-SCOP	Ig_E-set	UniProtKB/TrEMBL
UniProt	A6KQY8	ENTREZGENE, UniProtKB/TrEMBL
	M0R521	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-07-08	Arrdc5	arrestin domain containing 5	LOC682107	similar to T12D8.4	Data merged from RGD:1586978	1643240	APPROVED
2008-03-05	Arrdc5	arrestin domain containing 5	LOC680452	similar to T12D8.4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC680452	similar to T12D8.4			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC682107	similar to T12D8.4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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