Haus3 (HAUS augmin-like complex, subunit 3) - Rat Genome Database

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Gene: Haus3 (HAUS augmin-like complex, subunit 3) Rattus norvegicus
Analyze
Symbol: Haus3
Name: HAUS augmin-like complex, subunit 3
RGD ID: 1591723
Description: Predicted to enable DNA-directed DNA polymerase activity and cyclin binding activity. Predicted to be involved in DNA repair and microtubule cytoskeleton organization. Predicted to be located in centrosome; mitotic spindle microtubule; and nucleus. Predicted to be part of HAUS complex. Orthologous to human HAUS3 (HAUS augmin like complex subunit 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: HAUS augmin-like complex subunit 3; hypothetical protein LOC680477; LOC680477; similar to EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,805,036 - 80,977,012 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1480,806,040 - 80,977,015 (+)EnsemblGRCr8
mRatBN7.21476,580,549 - 76,599,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1476,580,546 - 76,752,463 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1481,032,447 - 81,051,658 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01482,273,084 - 82,292,296 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01478,718,327 - 78,737,539 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,837,772 - 81,857,458 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,837,809 - 81,856,830 (+)Ensemblrn6Rnor6.0
Rnor_5.01482,523,103 - 82,542,098 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41482,271,675 - 82,291,082 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1475,504,187 - 75,523,180 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19369198   PMID:19427217   PMID:21399614  


Genomics

Comparative Map Data
Haus3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,805,036 - 80,977,012 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1480,806,040 - 80,977,015 (+)EnsemblGRCr8
mRatBN7.21476,580,549 - 76,599,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1476,580,546 - 76,752,463 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1481,032,447 - 81,051,658 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01482,273,084 - 82,292,296 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01478,718,327 - 78,737,539 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,837,772 - 81,857,458 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,837,809 - 81,856,830 (+)Ensemblrn6Rnor6.0
Rnor_5.01482,523,103 - 82,542,098 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41482,271,675 - 82,291,082 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1475,504,187 - 75,523,180 (+)NCBICelera
Cytogenetic Map14q21NCBI
HAUS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3842,228,349 - 2,242,121 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl42,227,464 - 2,242,133 (-)Ensemblhg38GRCh38
GRCh3742,230,076 - 2,243,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3642,199,894 - 2,213,658 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3442,197,326 - 2,211,091NCBI
Celera42,142,444 - 2,156,208 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef42,171,085 - 2,184,849 (-)NCBIHuRef
CHM1_142,228,588 - 2,242,351 (-)NCBICHM1_1
T2T-CHM13v2.042,227,124 - 2,240,896 (-)NCBIT2T-CHM13v2.0
Haus3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,311,240 - 34,326,768 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,311,224 - 34,326,871 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38534,153,896 - 34,169,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,153,880 - 34,169,527 (-)Ensemblmm10GRCm38
MGSCv37534,496,545 - 34,512,073 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36534,470,753 - 34,486,281 (-)NCBIMGSCv36mm8
Celera531,624,487 - 31,640,026 (-)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.84NCBI
Haus3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555141,327,039 - 1,341,635 (-)Ensembl
ChiLan1.0NW_0049555141,331,838 - 1,342,128 (-)NCBIChiLan1.0ChiLan1.0
HAUS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v232,564,922 - 2,575,829 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan142,500,668 - 2,512,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v042,370,947 - 2,385,108 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.142,282,482 - 2,292,730 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl42,282,482 - 2,292,739 (-)EnsemblpanPan2panpan1.1
HAUS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,946,289 - 61,961,589 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,946,838 - 61,960,473 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha364,465,142 - 64,479,574 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0362,421,610 - 62,435,812 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1361,915,354 - 61,929,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0362,118,171 - 62,133,474 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0362,478,082 - 62,493,401 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Haus3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,548,965 - 67,564,305 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,241,328 - 21,265,988 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,250,707 - 21,265,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAUS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,073,889 - 1,197,086 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.181,187,149 - 1,198,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28963,251 - 973,279 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAUS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12746,522,988 - 46,533,497 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2746,522,991 - 46,533,408 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660512,892,853 - 2,903,429 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Haus3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,316,893 - 25,331,303 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475525,316,644 - 25,327,998 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Haus3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11177,015,709 - 77,050,084 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Haus3
811 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:84
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000020576
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC162020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020576   ⟹   ENSRNOP00000020576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,806,040 - 80,825,080 (+)Ensembl
mRatBN7.2 Ensembl1476,580,571 - 76,600,208 (+)Ensembl
Rnor_6.0 Ensembl1481,837,809 - 81,856,830 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000029784   ⟹   ENSRNOP00000034638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,806,040 - 80,977,015 (+)Ensembl
mRatBN7.2 Ensembl1476,580,549 - 76,752,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000058067   ⟹   ENSRNOP00000054875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,826,063 - 80,977,015 (+)Ensembl
mRatBN7.2 Ensembl1476,580,546 - 76,752,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000058068   ⟹   ENSRNOP00000054876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,826,063 - 80,977,015 (+)Ensembl
mRatBN7.2 Ensembl1476,580,546 - 76,752,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133007   ⟹   ENSRNOP00000098993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,826,063 - 80,977,015 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145846   ⟹   ENSRNOP00000108840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,806,040 - 80,846,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000153917   ⟹   ENSRNOP00000105117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,826,063 - 80,975,834 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158360   ⟹   ENSRNOP00000101290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1480,806,119 - 80,824,162 (+)Ensembl
RefSeq Acc Id: NM_001109412   ⟹   NP_001102882
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,115 - 80,824,108 (+)NCBI
mRatBN7.21476,580,549 - 76,599,542 (+)NCBI
Rnor_6.01481,837,781 - 81,856,776 (+)NCBI
Rnor_5.01482,523,103 - 82,542,098 (+)NCBI
RGSC_v3.41482,271,675 - 82,291,082 (+)RGD
Celera1475,504,187 - 75,523,180 (+)RGD
Sequence:
RefSeq Acc Id: XM_039092838   ⟹   XP_038948766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,852,306 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273600   ⟹   XP_063129670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,039 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273601   ⟹   XP_063129671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273602   ⟹   XP_063129672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,038 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273603   ⟹   XP_063129673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273604   ⟹   XP_063129674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273605   ⟹   XP_063129675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273606   ⟹   XP_063129676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,036 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273607   ⟹   XP_063129677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,044 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273608   ⟹   XP_063129678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,823,987 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273609   ⟹   XP_063129679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,038 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273610   ⟹   XP_063129680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,044 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273612   ⟹   XP_063129682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,857,794 (+)NCBI
RefSeq Acc Id: XM_063273613   ⟹   XP_063129683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,853,124 (+)NCBI
RefSeq Acc Id: XM_063273614   ⟹   XP_063129684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,977,012 (+)NCBI
RefSeq Acc Id: XM_063273615   ⟹   XP_063129685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,828,609 (+)NCBI
RefSeq Acc Id: XR_010057409
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,970,751 (+)NCBI
RefSeq Acc Id: XR_010057410
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,975,402 (+)NCBI
RefSeq Acc Id: XR_010057411
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,976,735 (+)NCBI
RefSeq Acc Id: XR_010057412
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,975,405 (+)NCBI
RefSeq Acc Id: XR_010057413
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,974,618 (+)NCBI
RefSeq Acc Id: XR_010057414
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,975,402 (+)NCBI
RefSeq Acc Id: XR_010057415
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,976,735 (+)NCBI
RefSeq Acc Id: XR_010057416
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,805,089 - 80,855,939 (+)NCBI
RefSeq Acc Id: NP_001102882   ⟸   NM_001109412
- UniProtKB: B1WC65 (UniProtKB/TrEMBL),   F7F7L8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020576   ⟸   ENSRNOT00000020576
Ensembl Acc Id: ENSRNOP00000034638   ⟸   ENSRNOT00000029784
Ensembl Acc Id: ENSRNOP00000054876   ⟸   ENSRNOT00000058068
Ensembl Acc Id: ENSRNOP00000054875   ⟸   ENSRNOT00000058067
RefSeq Acc Id: XP_063129676   ⟸   XM_063273606
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129672   ⟸   XM_063273602
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129679   ⟸   XM_063273609
- Peptide Label: isoform X6
- UniProtKB: F1M178 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129670   ⟸   XM_063273600
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129680   ⟸   XM_063273610
- Peptide Label: isoform X7
- UniProtKB: F1M178 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129677   ⟸   XM_063273607
- Peptide Label: isoform X6
- UniProtKB: F1M178 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129673   ⟸   XM_063273603
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129675   ⟸   XM_063273605
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063129674   ⟸   XM_063273604
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129671   ⟸   XM_063273601
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129684   ⟸   XM_063273614
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063129682   ⟸   XM_063273612
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063129683   ⟸   XM_063273613
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063129685   ⟸   XM_063273615
- Peptide Label: isoform X11
- UniProtKB: B1WC65 (UniProtKB/TrEMBL),   F7F7L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129678   ⟸   XM_063273608
- Peptide Label: isoform X6
- UniProtKB: F1M178 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948766   ⟸   XM_039092838
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000101290   ⟸   ENSRNOT00000158360
Ensembl Acc Id: ENSRNOP00000105117   ⟸   ENSRNOT00000153917
Ensembl Acc Id: ENSRNOP00000108840   ⟸   ENSRNOT00000145846
Ensembl Acc Id: ENSRNOP00000098993   ⟸   ENSRNOT00000133007
Protein Domains
DNA-directed DNA polymerase family A palm   HAUS augmin-like complex subunit 3 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC65-F1-model_v2 AlphaFold B1WC65 1-603 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699405
Promoter ID:EPDNEW_R9929
Type:initiation region
Name:Haus3_1
Description:HAUS augmin-like complex, subunit 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01481,837,799 - 81,837,859EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591723 AgrOrtholog
BioCyc Gene G2FUF-15279 BioCyc
Ensembl Genes ENSRNOG00000015255 Ensembl
  ENSRNOG00000069005 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020576 ENTREZGENE
  ENSRNOT00000020576.7 UniProtKB/TrEMBL
  ENSRNOT00000029784 ENTREZGENE
  ENSRNOT00000029784.9 UniProtKB/TrEMBL
  ENSRNOT00000058067.5 UniProtKB/TrEMBL
  ENSRNOT00000058068 ENTREZGENE
  ENSRNOT00000058068.7 UniProtKB/TrEMBL
  ENSRNOT00000133007 ENTREZGENE
  ENSRNOT00000133007.1 UniProtKB/TrEMBL
  ENSRNOT00000145846.1 UniProtKB/TrEMBL
  ENSRNOT00000153917.1 UniProtKB/TrEMBL
  ENSRNOT00000158360.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.30.70.370 UniProtKB/TrEMBL
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/TrEMBL
  Taq DNA Polymerase, Chain T, domain 4 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9098415 IMAGE-MGC_LOAD
InterPro DNA-dir_DNA_pol_A_palm_dom UniProtKB/TrEMBL
  DNA/RNA_pol_sf UniProtKB/TrEMBL
  DNA_pol_P_Exo UniProtKB/TrEMBL
  DNA_polymerase_A UniProtKB/TrEMBL
  HAUS3 UniProtKB/TrEMBL
  HAUS3_N UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
KEGG Report rno:680477 UniProtKB/TrEMBL
MGC_CLONE MGC:187898 IMAGE-MGC_LOAD
NCBI Gene 680477 ENTREZGENE
PANTHER DNA POLYMERASE NU UniProtKB/TrEMBL
  HAUS AUGMIN-LIKE COMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR10133 UniProtKB/TrEMBL
  PTHR19378 UniProtKB/TrEMBL
Pfam DNA_pol_A UniProtKB/TrEMBL
  DNA_pol_P_Exo UniProtKB/TrEMBL
  HAUS-augmin3 UniProtKB/TrEMBL
PhenoGen Haus3 PhenoGen
PRINTS DNAPOLI UniProtKB/TrEMBL
  HAUSAUGMINL3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015255 RatGTEx
  ENSRNOG00000069005 RatGTEx
SMART POLAc UniProtKB/TrEMBL
Superfamily-SCOP SSF56672 UniProtKB/TrEMBL
UniProt A0ABK0LD66_RAT UniProtKB/TrEMBL
  A0ABK0LIH4_RAT UniProtKB/TrEMBL
  A0ABK0LSF1_RAT UniProtKB/TrEMBL
  A0ABK0M1C4_RAT UniProtKB/TrEMBL
  B1WC65 ENTREZGENE, UniProtKB/TrEMBL
  F1LWX6_RAT UniProtKB/TrEMBL
  F1M178 ENTREZGENE, UniProtKB/TrEMBL
  F1M179_RAT UniProtKB/TrEMBL
  F7F7L8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-21 Haus3  HAUS augmin-like complex, subunit 3  LOC680477  similar to EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680477  similar to EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1)  LOC682474  similar to EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1)  Data merged from RGD:1583418 1643240 APPROVED
2006-11-20 LOC680477  similar to EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682474  similar to EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1)      Symbol and Name status set to provisional 70820 PROVISIONAL