Dazl (deleted in azoospermia-like) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Dazl (deleted in azoospermia-like) Rattus norvegicus
Analyze
Symbol: Dazl
Name: deleted in azoospermia-like
RGD ID: 1591714
Description: Predicted to enable identical protein binding activity; mRNA 3'-UTR binding activity; and translation activator activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization and positive regulation of translational initiation. Predicted to act upstream of or within female meiosis II; oocyte maturation; and positive regulation of meiotic nuclear division. Predicted to be located in nucleus and ribosome. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Orthologous to several human genes including DAZL (deleted in azoospermia like); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: deleted in azoospermia protein 3; LOC680486; similar to Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8918,193,363 - 18,210,100 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl918,193,363 - 18,210,100 (+)EnsemblGRCr8
mRatBN7.2910,695,593 - 10,712,330 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl910,695,592 - 10,712,323 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx919,196,599 - 19,213,357 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0924,263,194 - 24,279,952 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0922,644,773 - 22,661,531 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0912,633,983 - 12,651,017 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl912,633,990 - 12,650,938 (+)Ensemblrn6Rnor6.0
Rnor_5.0911,575,025 - 11,591,973 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.495,899,104 - 5,915,835 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera98,474,104 - 8,490,835 (+)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
nucleus  (IEA,ISO)
protein-containing complex  (ISO)
ribosome  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9288969   PMID:10857750   PMID:10903443   PMID:11390979   PMID:11604102   PMID:11804965   PMID:14611631   PMID:15081113   PMID:16001084   PMID:16310179   PMID:19621088   PMID:21460039  


Genomics

Comparative Map Data
Dazl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8918,193,363 - 18,210,100 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl918,193,363 - 18,210,100 (+)EnsemblGRCr8
mRatBN7.2910,695,593 - 10,712,330 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl910,695,592 - 10,712,323 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx919,196,599 - 19,213,357 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0924,263,194 - 24,279,952 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0922,644,773 - 22,661,531 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0912,633,983 - 12,651,017 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl912,633,990 - 12,650,938 (+)Ensemblrn6Rnor6.0
Rnor_5.0911,575,025 - 11,591,973 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.495,899,104 - 5,915,835 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera98,474,104 - 8,490,835 (+)NCBICelera
Cytogenetic Map9q12NCBI
DAZL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38316,586,792 - 16,605,423 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl316,586,792 - 16,670,306 (-)Ensemblhg38GRCh38
GRCh37316,628,299 - 16,646,930 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36316,603,303 - 16,622,010 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34316,603,306 - 16,622,010NCBI
Celera316,567,358 - 16,586,066 (-)NCBICelera
Cytogenetic Map3p24.3NCBI
HuRef316,562,073 - 16,580,780 (-)NCBIHuRef
CHM1_1316,579,744 - 16,598,453 (-)NCBICHM1_1
T2T-CHM13v2.0316,587,918 - 16,606,550 (-)NCBIT2T-CHM13v2.0
Dazl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391750,586,422 - 50,600,627 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1750,586,423 - 50,600,664 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381750,279,393 - 50,293,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1750,279,395 - 50,293,636 (-)Ensemblmm10GRCm38
MGSCv371750,418,719 - 50,432,924 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361749,744,968 - 49,759,166 (-)NCBIMGSCv36mm8
Celera1753,721,165 - 53,735,366 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1725.86NCBI
Dazl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554308,869,352 - 8,880,789 (-)Ensembl
ChiLan1.0NW_0049554308,869,419 - 8,880,782 (-)NCBIChiLan1.0ChiLan1.0
DAZL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,570,582 - 16,592,426 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1316,575,345 - 16,597,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0316,514,327 - 16,625,601 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1316,851,158 - 16,963,004 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl316,851,158 - 16,862,963 (-)EnsemblpanPan2panpan1.1
DAZL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12326,194,061 - 26,212,506 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2326,169,469 - 26,187,771 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02326,695,154 - 26,713,476 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2326,694,909 - 26,712,429 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12326,396,512 - 26,414,786 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02326,457,954 - 26,476,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02326,706,974 - 26,725,278 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dazl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118176,251,748 - 176,270,268 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364739,392,279 - 9,408,606 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364739,392,079 - 9,436,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DAZL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl133,764,784 - 3,782,818 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1133,762,896 - 3,783,848 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,036,653 - 4,056,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DAZL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11561,398,284 - 61,413,222 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1561,398,400 - 61,407,054 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604134,436,747 - 34,453,232 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dazl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248211,836,632 - 1,854,048 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dazl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1479,656,442 - 79,673,202 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dazl
73 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:114
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000066517
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9360535521031556Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat

Markers in Region
Dazl  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2910,700,948 - 10,702,054 (+)MAPPERmRatBN7.2
Rnor_6.0912,639,564 - 12,640,669NCBIRnor6.0
Rnor_5.0911,580,599 - 11,581,704UniSTSRnor5.0
RGSC_v3.495,904,461 - 5,905,566UniSTSRGSC3.4
Celera98,479,461 - 8,480,566UniSTS
Cytogenetic Map9q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
2 4 5 80 31 21 12 22 12 61 37 2 71 6 60 9 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000066517   ⟹   ENSRNOP00000061343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl918,193,363 - 18,210,100 (+)Ensembl
mRatBN7.2 Ensembl910,695,592 - 10,712,323 (+)Ensembl
Rnor_6.0 Ensembl912,633,990 - 12,650,938 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077532   ⟹   ENSRNOP00000070802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl918,193,363 - 18,210,100 (+)Ensembl
mRatBN7.2 Ensembl910,695,592 - 10,712,323 (+)Ensembl
Rnor_6.0 Ensembl912,634,042 - 12,650,928 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097126   ⟹   ENSRNOP00000079100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,699,914 - 10,712,323 (+)Ensembl
RefSeq Acc Id: NM_001109414   ⟹   NP_001102884
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,193,363 - 18,210,100 (+)NCBI
mRatBN7.2910,695,593 - 10,712,330 (+)NCBI
Rnor_6.0912,633,990 - 12,650,938 (+)NCBI
Rnor_5.0911,575,025 - 11,591,973 (+)NCBI
RGSC_v3.495,899,104 - 5,915,835 (+)RGD
Celera98,474,104 - 8,490,835 (+)RGD
Sequence:
RefSeq Acc Id: NM_001413924   ⟹   NP_001400853
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,193,363 - 18,210,100 (+)NCBI
mRatBN7.2910,695,593 - 10,712,330 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102884 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400853 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM18963 (Get FASTA)   NCBI Sequence Viewer  
  EDM18964 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061343
  ENSRNOP00000061343.1
  ENSRNOP00000070802
  ENSRNOP00000070802.1
RefSeq Acc Id: NP_001102884   ⟸   NM_001109414
- Peptide Label: isoform 2
- UniProtKB: D4A0P8 (UniProtKB/TrEMBL),   A6JIB9 (UniProtKB/TrEMBL),   A0A8I5ZME3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070802   ⟸   ENSRNOT00000077532
Ensembl Acc Id: ENSRNOP00000061343   ⟸   ENSRNOT00000066517
Ensembl Acc Id: ENSRNOP00000079100   ⟸   ENSRNOT00000097126
RefSeq Acc Id: NP_001400853   ⟸   NM_001413924
- Peptide Label: isoform 1
- UniProtKB: A0A8I5ZME3 (UniProtKB/TrEMBL),   A0A0G2JYV3 (UniProtKB/TrEMBL),   A6JIB8 (UniProtKB/TrEMBL)
Protein Domains
DAZ   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JYV3-F1-model_v2 AlphaFold A0A0G2JYV3 1-298 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696480
Promoter ID:EPDNEW_R7005
Type:single initiation site
Name:Dazl_1
Description:deleted in azoospermia-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0912,633,991 - 12,634,051EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591714 AgrOrtholog
BioCyc Gene G2FUF-28346 BioCyc
Ensembl Genes ENSRNOG00000023474 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066517 ENTREZGENE
  ENSRNOT00000066517.4 UniProtKB/TrEMBL
  ENSRNOT00000077532 ENTREZGENE
  ENSRNOT00000077532.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro DAZ_repeat UniProtKB/TrEMBL
  DAZ_RRM_vert UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
KEGG Report rno:680486 UniProtKB/TrEMBL
NCBI Gene 680486 ENTREZGENE
PANTHER PTHR11176 UniProtKB/TrEMBL
  PTHR11176:SF4 UniProtKB/TrEMBL
Pfam Daz UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Dazl PhenoGen
PROSITE DAZ UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023474 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2JYV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZME3 ENTREZGENE
  A6JIB8 ENTREZGENE, UniProtKB/TrEMBL
  A6JIB9 ENTREZGENE, UniProtKB/TrEMBL
  D4A0P8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Dazl  deleted in azoospermia-like  LOC680486  similar to Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680486  similar to Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1)  LOC682624  similar to Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1)  Data merged from RGD:1596666 1643240 APPROVED
2006-11-20 LOC680486  similar to Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682624  similar to Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1)      Symbol and Name status set to provisional 70820 PROVISIONAL