Mia3 (MIA SH3 domain ER export factor 3) - Rat Genome Database

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Gene: Mia3 (MIA SH3 domain ER export factor 3) Rattus norvegicus
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Symbol: Mia3
Name: MIA SH3 domain ER export factor 3
RGD ID: 1591600
Description: Predicted to enable cargo receptor activity. Predicted to be involved in several processes, including COPII-coated vesicle cargo loading; protein transport; and regulation of leukocyte migration. Predicted to act upstream of or within chondrocyte development; collagen fibril organization; and positive regulation of bone mineralization. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum exit site and endoplasmic reticulum membrane. Orthologous to human MIA3 (MIA SH3 domain ER export factor 3); INTERACTS WITH 17beta-estradiol; bisphenol A; diuron.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC683007; melanoma inhibitory activity family, member 3; melanoma inhibitory activity protein 3; MIA family member 3, ER export factor; similar to melanoma inhibitory activity 3; transport and Golgi organization protein 1 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81397,502,040 - 97,547,155 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1397,494,275 - 97,543,587 (-)EnsemblGRCr8
mRatBN7.21394,970,421 - 95,012,071 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1394,970,424 - 95,011,972 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1397,475,789 - 97,517,336 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01398,875,598 - 98,917,143 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01396,057,744 - 96,099,289 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013101,727,434 - 101,770,127 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13101,727,935 - 101,761,541 (-)Ensemblrn6Rnor6.0
Rnor_5.013100,935,910 - 100,975,638 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1394,497,011 - 94,538,361 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17044017   PMID:17726152   PMID:19269366   PMID:19946888   PMID:21525241   PMID:21606205   PMID:25202031   PMID:27138255   PMID:28341552   PMID:28442536   PMID:31904090  


Genomics

Comparative Map Data
Mia3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81397,502,040 - 97,547,155 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1397,494,275 - 97,543,587 (-)EnsemblGRCr8
mRatBN7.21394,970,421 - 95,012,071 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1394,970,424 - 95,011,972 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1397,475,789 - 97,517,336 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01398,875,598 - 98,917,143 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01396,057,744 - 96,099,289 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013101,727,434 - 101,770,127 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13101,727,935 - 101,761,541 (-)Ensemblrn6Rnor6.0
Rnor_5.013100,935,910 - 100,975,638 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1394,497,011 - 94,538,361 (-)NCBICelera
Cytogenetic Map13q26NCBI
MIA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381222,618,097 - 222,668,007 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1222,618,090 - 222,668,007 (+)Ensemblhg38GRCh38
GRCh371222,791,439 - 222,841,349 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361220,858,067 - 220,907,974 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1196,010,506 - 196,060,426 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1193,465,425 - 193,515,349 (+)NCBIHuRef
CHM1_11224,063,933 - 224,113,866 (+)NCBICHM1_1
T2T-CHM13v2.01221,851,826 - 221,901,751 (+)NCBIT2T-CHM13v2.0
Mia3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,107,091 - 183,151,091 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,107,682 - 183,150,894 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381183,326,236 - 183,369,565 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,326,725 - 183,369,553 (-)Ensemblmm10GRCm38
Celera1190,326,494 - 190,370,357 (-)NCBICelera
Cytogenetic Map1H5NCBI
Mia3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,850,942 - 1,890,390 (-)Ensembl
ChiLan1.0NW_0049555201,853,145 - 1,890,338 (-)NCBIChiLan1.0ChiLan1.0
MIA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2126,654,962 - 26,708,563 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,608,370 - 26,662,214 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01198,291,200 - 198,339,502 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11203,307,949 - 203,354,919 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1203,304,237 - 203,354,919 (+)EnsemblpanPan2panpan1.1
MIA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13816,880,411 - 16,936,368 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3816,879,740 - 16,935,844 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3816,935,124 - 16,992,958 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03816,925,143 - 16,982,995 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3816,904,493 - 16,983,727 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13816,930,566 - 16,988,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03817,280,373 - 17,337,228 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03817,574,654 - 17,632,475 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1011,377,846 - 11,429,015 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11011,362,489 - 11,428,844 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21013,549,341 - 13,583,336 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,901,891 - 6,954,556 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,902,425 - 6,954,526 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660557,140,156 - 7,193,188 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mia3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11061,584,768 - 61,626,991 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mia3
244 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
AW526955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21394,973,102 - 94,973,265 (+)MAPPERmRatBN7.2
Rnor_6.013101,730,115 - 101,730,277NCBIRnor6.0
Rnor_5.013100,938,591 - 100,938,753UniSTSRnor5.0
Celera1394,499,692 - 94,499,854UniSTS
RH 3.4 Map13650.7UniSTS
RH142097  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21394,970,701 - 94,970,911 (+)MAPPERmRatBN7.2
Rnor_6.013101,727,714 - 101,727,923NCBIRnor6.0
Rnor_5.013100,936,190 - 100,936,399UniSTSRnor5.0
Celera1394,497,291 - 94,497,500UniSTS
RH 3.4 Map13651.7UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000080170   ⟹   ENSRNOP00000071370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,502,040 - 97,519,619 (-)Ensembl
mRatBN7.2 Ensembl1394,970,684 - 94,988,012 (-)Ensembl
Rnor_6.0 Ensembl13101,727,935 - 101,748,098 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085600   ⟹   ENSRNOP00000069539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,502,040 - 97,543,587 (-)Ensembl
mRatBN7.2 Ensembl1394,970,424 - 95,011,972 (-)Ensembl
Rnor_6.0 Ensembl13101,727,935 - 101,761,541 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099629   ⟹   ENSRNOP00000087321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,502,040 - 97,543,587 (-)Ensembl
mRatBN7.2 Ensembl1394,970,424 - 95,011,972 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113437   ⟹   ENSRNOP00000093846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,502,630 - 97,543,587 (-)Ensembl
mRatBN7.2 Ensembl1394,970,684 - 95,011,972 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141932   ⟹   ENSRNOP00000107042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,502,040 - 97,543,587 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000162162   ⟹   ENSRNOP00000100877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,502,040 - 97,543,587 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000166803   ⟹   ENSRNOP00000112437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1397,494,275 - 97,543,587 (-)Ensembl
RefSeq Acc Id: NM_001398684   ⟹   NP_001385613
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81397,502,040 - 97,543,587 (-)NCBI
mRatBN7.21394,970,424 - 95,011,975 (-)NCBI
RefSeq Acc Id: NM_001398698   ⟹   NP_001385627
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81397,502,040 - 97,519,619 (-)NCBI
mRatBN7.21394,970,424 - 94,988,005 (-)NCBI
RefSeq Acc Id: XM_039091493   ⟹   XP_038947421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81397,502,040 - 97,547,155 (-)NCBI
mRatBN7.21394,970,421 - 95,012,071 (-)NCBI
RefSeq Acc Id: XM_063272603   ⟹   XP_063128673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81397,502,040 - 97,519,686 (-)NCBI
RefSeq Acc Id: XM_063272604   ⟹   XP_063128674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81397,502,040 - 97,519,686 (-)NCBI
Ensembl Acc Id: ENSRNOP00000071370   ⟸   ENSRNOT00000080170
Ensembl Acc Id: ENSRNOP00000069539   ⟸   ENSRNOT00000085600
RefSeq Acc Id: XP_038947421   ⟸   XM_039091493
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGK4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000087321   ⟸   ENSRNOT00000099629
Ensembl Acc Id: ENSRNOP00000093846   ⟸   ENSRNOT00000113437
RefSeq Acc Id: NP_001385613   ⟸   NM_001398684
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A0G2JVM2 (UniProtKB/TrEMBL),   A0A8I6AGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385627   ⟸   NM_001398698
- Peptide Label: isoform 2
- UniProtKB: A0A0G2K0A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128673   ⟸   XM_063272603
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K0A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128674   ⟸   XM_063272604
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0A8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112437   ⟸   ENSRNOT00000166803
Ensembl Acc Id: ENSRNOP00000100877   ⟸   ENSRNOT00000162162
Ensembl Acc Id: ENSRNOP00000107042   ⟸   ENSRNOT00000141932
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVM2-F1-model_v2 AlphaFold A0A0G2JVM2 1-1377 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591600 AgrOrtholog
BioCyc Gene G2FUF-17036 BioCyc
Ensembl Genes ENSRNOG00000059202 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080170 ENTREZGENE
  ENSRNOT00000080170.3 UniProtKB/TrEMBL
  ENSRNOT00000085600 ENTREZGENE
  ENSRNOT00000085600.3 UniProtKB/TrEMBL
  ENSRNOT00000099629.2 UniProtKB/TrEMBL
  ENSRNOT00000113437.2 UniProtKB/TrEMBL
  ENSRNOT00000141932.1 UniProtKB/TrEMBL
  ENSRNOT00000162162 ENTREZGENE
  ENSRNOT00000162162.1 UniProtKB/TrEMBL
  ENSRNOT00000166803.1 UniProtKB/TrEMBL
Gene3D-CATH SH3 Domains UniProtKB/TrEMBL
InterPro cTAGE_MIA/OTOR UniProtKB/TrEMBL
  NPIP_N UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene 683007 ENTREZGENE
PANTHER MELANOMA INHIBITORY ACTIVITY-RELATED UniProtKB/TrEMBL
  TRANSPORT AND GOLGI ORGANIZATION PROTEIN 1 HOMOLOG UniProtKB/TrEMBL
Pfam NPIP UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PhenoGen Mia3 PhenoGen
PROSITE SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000059202 RatGTEx
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt A0A0G2JVM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K0A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7R3_RAT UniProtKB/TrEMBL
  A0A8I6AGK4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LA50_RAT UniProtKB/TrEMBL
  A0ABK0LMS4_RAT UniProtKB/TrEMBL
  A0ABK0M8H2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-25 Mia3  MIA SH3 domain ER export factor 3  Mia3  MIA family member 3, ER export factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-06-29 Mia3  MIA family member 3, ER export factor  Mia3  melanoma inhibitory activity family, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-13 Mia3  melanoma inhibitory activity family, member 3  LOC683007  similar to melanoma inhibitory activity 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC683007  similar to melanoma inhibitory activity 3      Symbol and Name status set to provisional 70820 PROVISIONAL