Dnal1 (dynein, axonemal, light chain 1) - Rat Genome Database

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Gene: Dnal1 (dynein, axonemal, light chain 1) Rattus norvegicus
Analyze
Symbol: Dnal1
Name: dynein, axonemal, light chain 1
RGD ID: 1591349
Description: Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be located in cell projection and microtubule. Predicted to be part of dynein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 16. Orthologous to human DNAL1 (dynein axonemal light chain 1); PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: axonemal dynein light chain 1; Dnalc1; dynein axonemal light chain 1; dynein light chain 1, axonemal; LC1; LOC685664; similar to axonemal dynein light chain 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86109,478,941 - 109,515,201 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6109,478,858 - 109,513,148 (+)EnsemblGRCr8
mRatBN7.26103,747,801 - 103,779,015 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,747,753 - 103,778,878 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6103,909,608 - 103,935,833 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,208,829 - 104,234,920 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,578,275 - 103,604,506 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,596,785 - 107,623,869 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6107,596,782 - 107,625,214 (+)Ensemblrn6Rnor6.0
Rnor_5.06117,912,885 - 117,939,781 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46108,164,166 - 108,190,405 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,576,910 - 101,603,128 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15845866   PMID:21496787  


Genomics

Comparative Map Data
Dnal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86109,478,941 - 109,515,201 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6109,478,858 - 109,513,148 (+)EnsemblGRCr8
mRatBN7.26103,747,801 - 103,779,015 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,747,753 - 103,778,878 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6103,909,608 - 103,935,833 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,208,829 - 104,234,920 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,578,275 - 103,604,506 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,596,785 - 107,623,869 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6107,596,782 - 107,625,214 (+)Ensemblrn6Rnor6.0
Rnor_5.06117,912,885 - 117,939,781 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46108,164,166 - 108,190,405 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,576,910 - 101,603,128 (+)NCBICelera
Cytogenetic Map6q31NCBI
DNAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381473,644,986 - 73,703,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1473,644,875 - 73,703,732 (+)Ensemblhg38GRCh38
GRCh371474,111,689 - 74,170,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361473,181,455 - 73,232,950 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341473,181,454 - 73,232,945NCBI
Celera1454,147,655 - 54,204,739 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1454,279,296 - 54,337,917 (+)NCBIHuRef
CHM1_11474,051,139 - 74,109,973 (+)NCBICHM1_1
T2T-CHM13v2.01467,852,479 - 67,911,268 (+)NCBIT2T-CHM13v2.0
Dnal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,161,057 - 84,190,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,161,140 - 84,194,272 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381284,114,279 - 84,143,517 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,114,366 - 84,147,498 (+)Ensemblmm10GRCm38
MGSCv371285,455,278 - 85,484,467 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361285,004,119 - 85,028,205 (+)NCBIMGSCv36mm8
Celera1285,561,148 - 85,590,364 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.05NCBI
Dnal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555231,678,951 - 1,719,468 (-)Ensembl
ChiLan1.0NW_0049555231,682,955 - 1,719,468 (-)NCBIChiLan1.0ChiLan1.0
DNAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21574,733,951 - 74,793,849 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11473,951,477 - 74,005,938 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01454,204,306 - 54,258,747 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11473,062,108 - 73,119,790 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1473,062,108 - 73,112,026 (+)EnsemblpanPan2panpan1.1
DNAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1846,924,284 - 46,964,249 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl846,924,395 - 46,963,227 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha846,608,595 - 46,647,865 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0847,153,326 - 47,193,248 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl847,153,396 - 47,197,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1846,820,861 - 46,860,107 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0846,839,156 - 46,878,393 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0847,229,631 - 47,268,898 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dnal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864029,079,316 - 29,117,310 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364882,951,521 - 2,989,773 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364882,951,681 - 2,989,787 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl796,999,602 - 97,047,090 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1796,999,526 - 97,047,102 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27102,691,104 - 102,733,670 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12450,851,756 - 50,904,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2450,868,828 - 50,903,859 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605339,040,480 - 39,127,361 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473427,854,031 - 27,885,696 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473427,844,412 - 27,885,770 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dnal1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1798,210,630 - 98,226,716 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dnal1
403 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:289
Count of miRNA genes:188
Interacting mature miRNAs:235
Transcripts:ENSRNOT00000036430
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
BF400259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,774,508 - 103,774,701 (+)MAPPERmRatBN7.2
Rnor_6.06107,623,492 - 107,623,684NCBIRnor6.0
Rnor_5.06117,913,070 - 117,913,262UniSTSRnor5.0
RGSC_v3.46108,190,876 - 108,191,068UniSTSRGSC3.4
Celera6101,603,599 - 101,603,791UniSTS
RH 3.4 Map6734.4UniSTS
Cytogenetic Map6q31UniSTS
BE120582  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,775,883 - 103,776,004 (+)MAPPERmRatBN7.2
Rnor_6.06107,624,867 - 107,624,987NCBIRnor6.0
Rnor_5.06117,911,767 - 117,911,887UniSTSRnor5.0
RGSC_v3.46108,192,251 - 108,192,371UniSTSRGSC3.4
Celera6101,604,974 - 101,605,094UniSTS
RH 3.4 Map6734.7UniSTS
Cytogenetic Map6q31UniSTS
BF399272  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,774,490 - 103,774,701 (+)MAPPERmRatBN7.2
Rnor_6.06107,623,474 - 107,623,684NCBIRnor6.0
Rnor_5.06117,913,070 - 117,913,280UniSTSRnor5.0
RGSC_v3.46108,190,858 - 108,191,068UniSTSRGSC3.4
Celera6101,603,581 - 101,603,791UniSTS
RH 3.4 Map6734.4UniSTS
Cytogenetic Map6q31UniSTS
BF390170  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,774,679 - 103,774,830 (+)MAPPERmRatBN7.2
Rnor_6.06107,623,663 - 107,623,813NCBIRnor6.0
Rnor_5.06117,912,941 - 117,913,091UniSTSRnor5.0
RGSC_v3.46108,191,047 - 108,191,197UniSTSRGSC3.4
Celera6101,603,770 - 101,603,920UniSTS
RH 3.4 Map6733.3UniSTS
Cytogenetic Map6q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 83 59 6 347 183 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000036430   ⟹   ENSRNOP00000034343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,478,912 - 109,510,145 (+)Ensembl
mRatBN7.2 Ensembl6103,754,596 - 103,776,209 (+)Ensembl
Rnor_6.0 Ensembl6107,603,580 - 107,625,192 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076055   ⟹   ENSRNOP00000068260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,748,715 - 103,778,878 (+)Ensembl
Rnor_6.0 Ensembl6107,596,785 - 107,625,214 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076882   ⟹   ENSRNOP00000068314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,747,753 - 103,778,878 (+)Ensembl
Rnor_6.0 Ensembl6107,596,782 - 107,625,214 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110092   ⟹   ENSRNOP00000091622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,747,840 - 103,778,878 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116434   ⟹   ENSRNOP00000091779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,478,858 - 109,499,843 (+)Ensembl
mRatBN7.2 Ensembl6103,747,753 - 103,768,705 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000123292   ⟹   ENSRNOP00000104424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,478,858 - 109,510,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136857   ⟹   ENSRNOP00000105538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,479,712 - 109,510,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142518   ⟹   ENSRNOP00000111600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,481,958 - 109,510,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000153497   ⟹   ENSRNOP00000103493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,478,858 - 109,513,148 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154576   ⟹   ENSRNOP00000107956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6109,479,410 - 109,510,145 (+)Ensembl
RefSeq Acc Id: NM_001109477   ⟹   NP_001102947
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,478,941 - 109,505,176 (+)NCBI
mRatBN7.26103,747,801 - 103,774,038 (+)NCBI
Rnor_6.06107,596,785 - 107,623,021 (+)NCBI
Rnor_5.06117,912,885 - 117,939,781 (-)NCBI
RGSC_v3.46108,164,166 - 108,190,405 (+)RGD
Celera6101,576,910 - 101,603,128 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240352   ⟹   XP_006240414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,481,949 - 109,515,201 (+)NCBI
mRatBN7.26103,750,963 - 103,779,015 (+)NCBI
Rnor_6.06107,599,963 - 107,623,869 (+)NCBI
Rnor_5.06117,912,885 - 117,939,781 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112928   ⟹   XP_038968856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,479,409 - 109,515,201 (+)NCBI
mRatBN7.26103,748,275 - 103,779,015 (+)NCBI
RefSeq Acc Id: XM_039112929   ⟹   XP_038968857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,478,990 - 109,515,201 (+)NCBI
mRatBN7.26103,747,856 - 103,779,015 (+)NCBI
RefSeq Acc Id: NP_001102947   ⟸   NM_001109477
- UniProtKB: A0A096MJZ0 (UniProtKB/TrEMBL),   A0A8I6AFZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240414   ⟸   XM_006240352
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000034343   ⟸   ENSRNOT00000036430
Ensembl Acc Id: ENSRNOP00000068314   ⟸   ENSRNOT00000076882
Ensembl Acc Id: ENSRNOP00000068260   ⟸   ENSRNOT00000076055
RefSeq Acc Id: XP_038968857   ⟸   XM_039112929
- Peptide Label: isoform X3
- UniProtKB: A6JDT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968856   ⟸   XM_039112928
- Peptide Label: isoform X2
- UniProtKB: A0A096MJU0 (UniProtKB/TrEMBL),   A0A8I6AFZ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091622   ⟸   ENSRNOT00000110092
Ensembl Acc Id: ENSRNOP00000091779   ⟸   ENSRNOT00000116434
Ensembl Acc Id: ENSRNOP00000104424   ⟸   ENSRNOT00000123292
Ensembl Acc Id: ENSRNOP00000103493   ⟸   ENSRNOT00000153497
Ensembl Acc Id: ENSRNOP00000111600   ⟸   ENSRNOT00000142518
Ensembl Acc Id: ENSRNOP00000107956   ⟸   ENSRNOT00000154576
Ensembl Acc Id: ENSRNOP00000105538   ⟸   ENSRNOT00000136857

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJZ0-F1-model_v2 AlphaFold A0A096MJZ0 1-190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694719
Promoter ID:EPDNEW_R5243
Type:initiation region
Name:Dnal1_1
Description:dynein, axonemal, light chain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06107,596,737 - 107,596,797EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591349 AgrOrtholog
BioCyc Gene G2FUF-36838 BioCyc
Ensembl Genes ENSRNOG00000042333 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000076882.3 UniProtKB/Swiss-Prot
  ENSRNOT00000123292 ENTREZGENE
  ENSRNOT00000136857 ENTREZGENE
  ENSRNOT00000142518 ENTREZGENE
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_4 UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:685664 UniProtKB/Swiss-Prot
NCBI Gene 685664 ENTREZGENE
PANTHER DYNEIN AXONEMAL LIGHT CHAIN 1 UniProtKB/Swiss-Prot
  NISCHARIN RELATED UniProtKB/Swiss-Prot
Pfam LRR_4 UniProtKB/Swiss-Prot
PhenoGen Dnal1 PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042333 RatGTEx
SMART LRR_SD22 UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
UniProt A0A096MJU0 ENTREZGENE
  A0A096MJZ0 ENTREZGENE
  A0A8I6ACR2_RAT UniProtKB/TrEMBL
  A0A8I6AFZ1 ENTREZGENE
  A0A8J8Y8N8_RAT UniProtKB/TrEMBL
  A0ABK0LJD9_RAT UniProtKB/TrEMBL
  A0ABK0LP54_RAT UniProtKB/TrEMBL
  A0ABK0LVA6_RAT UniProtKB/TrEMBL
  A0ABK0M1F6_RAT UniProtKB/TrEMBL
  A6JDT3 ENTREZGENE, UniProtKB/TrEMBL
  B1WBZ0_RAT UniProtKB/TrEMBL
  DNAL1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-17 Dnal1  dynein, axonemal, light chain 1  Dnalc1  dynein, axonemal, light chain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Dnalc1  dynein, axonemal, light chain 1  LOC685664  similar to axonemal dynein light chain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685664  similar to axonemal dynein light chain 1  LOC679326  similar to axonemal dynein light chain 1  Data merged from RGD:1589544 1643240 APPROVED
2006-11-20 LOC685664  similar to axonemal dynein light chain 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679326  similar to axonemal dynein light chain 1      Symbol and Name status set to provisional 70820 PROVISIONAL