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Gene: Wdr64 (WD repeat domain 64) Rattus norvegicus

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Symbol:

Wdr64

Name:

WD repeat domain 64

RGD ID:

1591103

Description:

Orthologous to human WDR64 (WD repeat domain 64); INTERACTS WITH bisphenol A; 1,2-dichloroethane (ortholog); aflatoxin B1 (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC689524; similar to PRP19/PSO4 homolog; WD repeat-containing protein 64

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR64 (WD repeat domain 64)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Wdr64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Wdr64 (WD repeat domain 64)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	WDR64 (WD repeat domain 64)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr64 (WD repeat domain 64)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	90,156,824 - 90,280,608 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	90,156,862 - 90,279,233 (+)	Ensembl				GRCr8
mRatBN7.2	13	87,624,588 - 87,746,749 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	87,624,607 - 87,747,327 (+)	Ensembl				mRatBN7.2
Rnor_6.0	13	93,751,754 - 93,874,149 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	93,751,759 - 93,874,105 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	98,216,033 - 98,338,170 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	91,432,038 - 91,556,083 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	87,222,834 - 87,338,999 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

cobalt atom (ISO)

cobalt dichloride (ISO)

methotrexate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

pirinixic acid (ISO)

sodium fluoride (ISO)

Tungsten carbide (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Wdr64
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	90,156,824 - 90,280,608 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	90,156,862 - 90,279,233 (+)	Ensembl				GRCr8
mRatBN7.2	13	87,624,588 - 87,746,749 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	87,624,607 - 87,747,327 (+)	Ensembl				mRatBN7.2
Rnor_6.0	13	93,751,754 - 93,874,149 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	93,751,759 - 93,874,105 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	98,216,033 - 98,338,170 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	91,432,038 - 91,556,083 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	87,222,834 - 87,338,999 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

WDR64
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	241,652,281 - 241,802,777 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	241,652,278 - 241,802,777 (+)	Ensembl			hg38	GRCh38
GRCh37	1	241,815,583 - 241,966,079 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	239,913,505 - 240,031,580 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	215,070,686 - 215,220,995 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI
HuRef	1	212,273,644 - 212,424,213 (+)	NCBI		HuRef
CHM1_1	1	243,088,248 - 243,238,003 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	241,063,753 - 241,214,784 (+)	NCBI		T2T-CHM13v2.0

Wdr64
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	175,526,135 - 175,643,300 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	175,526,159 - 175,643,300 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	175,698,569 - 175,815,734 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	175,698,593 - 175,815,734 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	177,628,724 - 177,745,865 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	177,603,713 - 177,652,406 (+)	NCBI		MGSCv36	mm8
Celera	1	182,784,250 - 182,901,662 (+)	NCBI		Celera
Cytogenetic Map	1	H3- H4	NCBI
cM Map	1	81.71	NCBI

Wdr64
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	10,318,124 - 10,438,890 (-)	Ensembl
ChiLan1.0	NW_004955406	10,317,674 - 10,439,077 (-)	NCBI	ChiLan1.0	ChiLan1.0

WDR64
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	7,343,483 - 7,494,823 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	7,567,881 - 7,719,617 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	217,214,176 - 217,364,983 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	222,194,990 - 222,344,102 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	222,194,990 - 222,344,758 (+)	Ensembl			panPan2	panpan1.1

WDR64
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	33,048,315 - 33,185,363 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	32,517,910 - 32,663,443 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	32,867,143 - 33,011,812 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	32,866,945 - 33,011,607 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	32,701,664 - 32,846,158 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	32,726,041 - 32,867,905 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	32,974,032 - 33,118,584 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Wdr64
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	45,925,133 - 46,058,459 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936526	8,689,313 - 8,821,950 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR64
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	11,746,565 - 11,825,546 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	11,745,830 - 11,835,287 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	14,008,317 - 14,053,608 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR64
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	78,730,966 - 78,886,806 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	78,731,570 - 78,886,366 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	80,864,419 - 81,024,251 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr64
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	11,997,669 - 12,149,454 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	11,997,750 - 12,149,360 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Wdr64
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	54,222,742 - 54,338,900 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Wdr64
597 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	256
Count of miRNA genes:	136
Interacting mature miRNAs:	150
Transcripts:	ENSRNOT00000005091, ENSRNOT00000038285, ENSRNOT00000038306, ENSRNOT00000065706, ENSRNOT00000073225
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1302791	Stl29	Serum triglyceride level QTL 29	3.3	0.0011	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	13	89333129	92500981	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
2	2	35	108	26	19	5	18	5	5	88	71	6	88	8	47	14	8	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065706 ⟹ ENSRNOP00000061354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	90,156,862 - 90,279,233 (+)	Ensembl
mRatBN7.2 Ensembl	13	87,624,607 - 87,747,327 (+)	Ensembl
Rnor_6.0 Ensembl	13	93,751,759 - 93,874,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107547 ⟹ ENSRNOP00000095558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	90,156,862 - 90,279,233 (+)	Ensembl
mRatBN7.2 Ensembl	13	87,624,607 - 87,747,327 (+)	Ensembl

RefSeq Acc Id:

XM_006250343 ⟹ XP_006250405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	90,156,824 - 90,280,608 (+)	NCBI
mRatBN7.2	13	87,624,589 - 87,746,749 (+)	NCBI
Rnor_6.0	13	93,751,754 - 93,874,149 (+)	NCBI
Rnor_5.0	13	98,216,033 - 98,338,170 (+)	NCBI

Sequence:

show sequence

TGCCTCTATGAAATGCAGCAGGCCTCAGCTTTCCTCCTGCTAACCCTCCTAGGAACAGCTCTTA
CTCCTTGTTCCTATCAGACGGGGATAAAAAAAAACCAGAGGAATGAGACCTAGGGCAAACGTTG
AGATGGCAGAGACATGTTATAAGAACTAGAAGCTTTTCCGCATTAGCAAATTTGCAGTATTATT
TCCTCCTCCGTGCAGAAATAAGAGACCCCTTATATCTGTATGGATGCCAGGGATGAGAAGCGGT
TCAACCTTGCACTGCAGATCAACAACTTCAAAGCGTCCTTGGTTGACTTCAATAAACTGGTTGA
ACAGACCACAGCCCAGAAAAAGGAAGAAAGAGCAGGCCTGTTTATCCCCAAAGAAGATGCAATC
GATTACGATAAGTTTTACGCCTCGGTACAGCAAATCTTTGGCCCTGAAGTGAAAAATCAAGATG
TGAAATGTTTTTACAGGAAGCTCTGCAACAACCCGGATGCAGCTTTCGACTGGTGTGAGATCTT
TGGATATTTTTCCACTGATGAAGATCCTCTTGCTTCGCAGATGGATGAAGAAAATATGGTTTTT
CTTGTGTCTAGGAAACAGCGAATTGTGATTTCAGGCAGTAGACGACGAGATGTGATCAAATGCA
TTGTGAAGGTCCCACAGCTGGATTTATTGATAACAGCATCTCAGAAAGGATTAATAACAGTCTT
CAACAGCCAGATGAGGGTTCAGACCAACACCAGTGTTACAGATACCTCCTGGATTACCGGCTGC
GATTACCTCGGCCAGCTAAAGCGAATCGTGGCCACCACAGAGAGGACCATTATTGTCTGGGATT
ATAAAGCTCAAGGGAGCAGCCAGGAGCACTATTTTGTCATCAAGCCCATGGACCATTGCCTGCT
GTGTGTGTGCGTGGTACCCCTCGCTGACCAGCTCTGCAGAGATGACATCCTCCTGGGGGACGAT
GGTGGGTTTGTGACCAGGTTCACGGTAAACAGCGATGACTTTGGATTAAAGCAGGCAAAAACCA
AGAAAAAATTACAAACTCAGGTCCTTGACTCTAAAAACTTTAAAAGCATTAAAAGGAAGCTGCA
CAATGACTGGGTCATGAAAATCAGATTCGTTCCAGCTCTCAATTGCTTTGGTTCCTGCTCTTTA
GACAGCGTCCATTCCTTAGTTTTGGAATCCTTGAAGAGAATTGAGGACAATTTGCCTGTCAGAG
AATTTGCCATGCCAAGAGGAGCCAACAGTTTCTGCTACTGTTTGAAAGCAAATGTGATTGTCAC
TGGAGGAGATGATAAAGTCCTCCGGTTGTGGCACCCAAACATCAGCACTAAGCCAGTTGGGAAG
CTGGTGGGACACATGTTCAGCATCACAGAGATCGTAAACAACGAGAAGGAGCAACATGTCATCA
GCCTCTCCTCTGCAAAGGTCTTCCGAGTGTGGGATATACAGACTCTATCAGTATTACAAGTCTT
CCACGATAGCCAGGGAGGACCAGGAGACATGCAGATTTACGCTATGGTATATGATACTAACCAC
GGCATGCTCATCACAGGATCCAGTGTAATAGACATGTATCCTTTGACCAGGATGATACAGGACA
CCAAGCAGGTTCCTCACACTCACGAACGAGAAGTCAACGTCATGCTCTATAACAAGTACTTCCA
CCAAGTGCTGACTATCTGCTCAGAGTCTGTGATCAAGGTATGGGAACTTGAGACCGGTCTCCAA
ATATACCAAATTCTAGACCCTCATGGCTTCAGTATTGAACTGACCTGCGCAACTATTGATGACA
GTGGGTTTCTTTTTGCCACAGGAGCATATAATGGGACAGTTAAGTTGTGGGACTTCGGCAGTGG
GCAGGAGATGAAAATGATGCCCGAAGGGAAAGACTGGGTGGAGGAGGAACACGCTTTGCTGCGC
CTGTTTTTCCTCAAGTCCCAAGTGAAGCAACAGCACTTCATCCTTGCCTTGGAGCGCAACGGGA
CTATCAAGATGGTCCAGGGAAAGGAAGATGATATCATCCTCACGGTGATATGGGAGCTGCCCAA
TGCCATGCCTTACCTACAATACGGGAGCCATATTGTGCATCTGAAGATGTCAACTAAAGAAAGG
GCAATGGGCATTCCTTTCCCAGACGTCGAGCTAATCGTCCAGAAAAGCATTTCTCAACAAACTA
CTAGTTCTACCACCAATACGGATGTGAACTGCATTGATGTATTTCAAACAGAGGGGTTTAATTT
GATAGTGTCTGGAACCTTAAATGGCATGATTATCTTATGGAATTTCATAGCGGCCTCTGTCAAA
GAAATATACCGGCCTGAGGATTGCTTCTCTACAGATCCCGAGTTGGATCCCAAACGCTTTCGAA
TTAATGATATAATGTTCCTCTTCCGAATTCCCGAATGTGTAAGGAGATCAAGTCAGGATTCCAT
ATGCTCCTCAACCCAATGTGACTCAAGCAAGGGTCCACAGAGTAGCAAGGGAAGTAAGCAAAGT
ATACATGACACCGAGGTCAAAGGCGAGCAAACAGACACAGGATCAGAACAGCAGTCAGTGAGCA
AGAAACAGACCGCGTCCACCAGCTCTGCGGAACCACAGCCTCCTCTCCTGGTCACTGCACACGA
GGATGGACACCTCCGTTTGTGGACGTTGGAGGGGAAGCTTCTGAAAGACATGCTGCCCTTCACG
AAGCACTCTGCCATTTCGCTGACGACACTGTACACGGACTCGTGCTGCAGGATACTGCTGGCTG
GGAACGTGGAAGGACACGTTATCCTTTGCAATATTGGTTCCTTCATGGATCCACCTCACGATGA
AAAGAAATTCAAGCAGCTGCTTTCCTGGCGTGCCCATTCTTTAGAGATTGTTCAAGTGATCTAC
GTTGAAGACAAGCAGCTGGTGCTTACCGCCTCCATTGATGGCTCAGTGAGGCTCTGGAATTCTA
CCAGTGGTCATTACTGTGGGTATTTTGGACAACGAAGAATGTTTGAATTATCCCAAATAAGTGA
CTTCATTTTGCCTTGTGATGTTAATGAGTATCCCGTAGAGATTAAAGAAGAGAGCAAGTTCACA
GAGAAGAAGCAAAAATATGAATATCCTTTGATATTTGACCGTGAAAGATGGAAAAAAATGAGCT
CCATGTCTTTGCTTTTCAAACGCTCACCTCCCAATCCCTTTGAAGTGCAACATGATTTTAAATT
TTTCAAGTCTCTTTCTTCTCCAAAGATTCGCCGATATGCTCTGGAAGGTTTCATGACAGAAAAC
AGAGAGGCAGGGATTGTTTTTGGTTCTCTGCCTATATACAGGGTACCAAGTCCCACGAGTCTAA
GATTCCTTCCCCTCATTGGCTCTGAAGCACAAAGAGATTCGTTGGAGGGCGTTCATTCGAAGAA
GAAGAGCACTCATGGTCATGGTGGATCACGGAGGAAAAGCTTGAAAAGGAATTTTGTCCCACAG
ATAAATCTGGCTTCGTCCTTCTTCCCAACCACAAACAAGTGAAGACGAGGCCTCAGAACTGGCT
GCTGCACAGGAGGCCACAAGGTCCAATCTAGTCAATATGAGAATGGCCACACCATCAGGCCATC
CTGGTAATGGAGATTGCTCAAGGAGCTCTGAACACCTCACAGGGCCTGCAGCCAGTTTACCAAC
ATTTTACACGTAGAAAAACATAACAAATGGGCAATGTCTCTCATCATTGTCAACAAGATCACAC
AAGGACTTAAAGGAAATCAGTAGCCTGGGTAGACCCAAATGATCTGGTTAGCGGTGATTAGCTT
AGCACCTCCACCTGTTCACCCCAGTCCATAACCAGAATTAGAGTGTGTGCAGTAAGAGGCAAAT
CATGTGTGTGTCCTGTTGTGTGTAGAGGACCATTGTTGCTGTCCTTTGTTTATTTGAAGTATTA
GGGTTTGAGTCCAGGGGCCTAGCGTACTAGGCAAGTCAGTTACATTAGCAGCTCTGTATTGAGA
TAAGGTCTATCTCACTAAATTAATCTGGGAGAGTGAATTTAAGGTTATCTTGCTTCAGTCTCCA
GATCTGCCAGGGAAATTATTATTAAAAGATTAAAAGGAGGAGGAGGAGAAGGAG

hide sequence

RefSeq Acc Id:

XM_039091435 ⟹ XP_038947363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	90,185,809 - 90,280,608 (+)	NCBI
mRatBN7.2	13	87,653,580 - 87,746,749 (+)	NCBI

RefSeq Acc Id:

XM_039091437 ⟹ XP_038947365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	90,227,372 - 90,280,608 (+)	NCBI
mRatBN7.2	13	87,696,072 - 87,746,749 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417758	(Get FASTA)	NCBI Sequence Viewer
	XP_006250405	(Get FASTA)	NCBI Sequence Viewer
	XP_038947363	(Get FASTA)	NCBI Sequence Viewer
	XP_038947365	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061354
	ENSRNOP00000061354.3
	ENSRNOP00000095558.1

RefSeq Acc Id:

XP_006250405 ⟸ XM_006250343

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDARDEKRFNLALQINNFKASLVDFNKLVEQTTAQKKEERAGLFIPKEDAIDYDKFYASVQQIF
GPEVKNQDVKCFYRKLCNNPDAAFDWCEIFGYFSTDEDPLASQMDEENMVFLVSRKQRIVISGS
RRRDVIKCIVKVPQLDLLITASQKGLITVFNSQMRVQTNTSVTDTSWITGCDYLGQLKRIVATT
ERTIIVWDYKAQGSSQEHYFVIKPMDHCLLCVCVVPLADQLCRDDILLGDDGGFVTRFTVNSDD
FGLKQAKTKKKLQTQVLDSKNFKSIKRKLHNDWVMKIRFVPALNCFGSCSLDSVHSLVLESLKR
IEDNLPVREFAMPRGANSFCYCLKANVIVTGGDDKVLRLWHPNISTKPVGKLVGHMFSITEIVN
NEKEQHVISLSSAKVFRVWDIQTLSVLQVFHDSQGGPGDMQIYAMVYDTNHGMLITGSSVIDMY
PLTRMIQDTKQVPHTHEREVNVMLYNKYFHQVLTICSESVIKVWELETGLQIYQILDPHGFSIE
LTCATIDDSGFLFATGAYNGTVKLWDFGSGQEMKMMPEGKDWVEEEHALLRLFFLKSQVKQQHF
ILALERNGTIKMVQGKEDDIILTVIWELPNAMPYLQYGSHIVHLKMSTKERAMGIPFPDVELIV
QKSISQQTTSSTTNTDVNCIDVFQTEGFNLIVSGTLNGMIILWNFIAASVKEIYRPEDCFSTDP
ELDPKRFRINDIMFLFRIPECVRRSSQDSICSSTQCDSSKGPQSSKGSKQSIHDTEVKGEQTDT
GSEQQSVSKKQTASTSSAEPQPPLLVTAHEDGHLRLWTLEGKLLKDMLPFTKHSAISLTTLYTD
SCCRILLAGNVEGHVILCNIGSFMDPPHDEKKFKQLLSWRAHSLEIVQVIYVEDKQLVLTASID
GSVRLWNSTSGHYCGYFGQRRMFELSQISDFILPCDVNEYPVEIKEESKFTEKKQKYEYPLIFD
RERWKKMSSMSLLFKRSPPNPFEVQHDFKFFKSLSSPKIRRYALEGFMTENREAGIVFGSLPIY
RVPSPTSLRFLPLIGSEAQRDSLEGVHSKKKSTHGHGGSRRKSLKRNFVPQINLASSFFPTTNK

hide sequence

Ensembl Acc Id:

ENSRNOP00000061354 ⟸ ENSRNOT00000065706

RefSeq Acc Id:	XP_038947363 ⟸ XM_039091435
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AN76 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947365 ⟸ XM_039091437
- Peptide Label:	isoform X3
- UniProtKB:	A6JGB8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095558 ⟸ ENSRNOT00000107547

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0M9-F1-model_v2	AlphaFold	D4A0M9	1-1088	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699047

Promoter ID:

EPDNEW_R9567

Type:

single initiation site

Name:

Wdr64_1

Description:

WD repeat domain 64

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	93,751,780 - 93,751,840	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1591103	AgrOrtholog
BioCyc Gene	G2FUF-17228	BioCyc
Ensembl Genes	ENSRNOG00000038083	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065706	ENTREZGENE
	ENSRNOT00000065706.6	UniProtKB/TrEMBL
	ENSRNOT00000107547.2	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	WD-EF-hand_domain	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:689524	UniProtKB/TrEMBL
NCBI Gene	689524	ENTREZGENE
PANTHER	WD REPEAT-CONTAINING PROTEIN 64	UniProtKB/TrEMBL
	WD40 REPEAT DOMAIN 95	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Wdr64	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000038083	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I6AN76	ENTREZGENE, UniProtKB/TrEMBL
	A6JGB8	ENTREZGENE, UniProtKB/TrEMBL
	D4A0M9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Wdr64	WD repeat domain 64	LOC681931	similar to PRP19/PSO4 homolog	Data merged from RGD:1589347	1643240	APPROVED
2008-03-06	Wdr64	WD repeat domain 64	LOC689524	similar to PRP19/PSO4 homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC689524	similar to PRP19/PSO4 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC681931	similar to PRP19/PSO4 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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