Zfp426 (zinc finger protein 426) - Rat Genome Database

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Pathways
Gene: Zfp426 (zinc finger protein 426) Rattus norvegicus
Analyze
Symbol: Zfp426
Name: zinc finger protein 426
RGD ID: 1590942
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF426 (zinc finger protein 426); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC690895; MGC156802; similar to zinc finger protein 426; Znf426
RGD Orthologs
Human
Mouse
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,272,830 - 27,305,116 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl827,272,831 - 27,305,259 (-)EnsemblGRCr8
mRatBN7.2818,996,583 - 19,029,266 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl818,996,585 - 19,028,839 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx823,017,039 - 23,049,072 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,314,882 - 21,346,917 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,226,337 - 19,258,561 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0821,477,328 - 21,511,228 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl821,477,329 - 21,492,801 (-)Ensemblrn6Rnor6.0
Rnor_5.0821,534,979 - 21,567,260 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4819,472,954 - 19,505,721 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera820,391,894 - 20,424,474 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Zfp426
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,272,830 - 27,305,116 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl827,272,831 - 27,305,259 (-)EnsemblGRCr8
mRatBN7.2818,996,583 - 19,029,266 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl818,996,585 - 19,028,839 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx823,017,039 - 23,049,072 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,314,882 - 21,346,917 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,226,337 - 19,258,561 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0821,477,328 - 21,511,228 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl821,477,329 - 21,492,801 (-)Ensemblrn6Rnor6.0
Rnor_5.0821,534,979 - 21,567,260 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4819,472,954 - 19,505,721 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera820,391,894 - 20,424,474 (-)NCBICelera
Cytogenetic Map8q13NCBI
ZNF426
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38199,523,223 - 9,538,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl199,523,223 - 9,538,826 (-)Ensemblhg38GRCh38
GRCh37199,633,899 - 9,649,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,499,667 - 9,510,303 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34199,499,682 - 9,510,303NCBI
Celera199,534,129 - 9,544,758 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef199,219,651 - 9,230,281 (-)NCBIHuRef
CHM1_1199,638,287 - 9,648,917 (-)NCBICHM1_1
T2T-CHM13v2.0199,649,415 - 9,664,832 (-)NCBIT2T-CHM13v2.0
Zfp426
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,379,845 - 20,404,042 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,379,845 - 20,404,042 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38920,468,549 - 20,492,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl920,468,549 - 20,492,746 (-)Ensemblmm10GRCm38
MGSCv37920,272,993 - 20,297,190 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36920,218,951 - 20,243,148 (-)NCBIMGSCv36mm8
Celera917,745,664 - 17,769,890 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.55NCBI
ZNF426
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22014,437,856 - 14,453,125 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11913,422,314 - 13,437,564 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,059,391 - 9,071,193 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1199,746,568 - 9,758,538 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl199,746,568 - 9,758,545 (-)EnsemblpanPan2panpan1.1
LOC100684878
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12051,282,910 - 51,298,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2051,146,770 - 51,163,266 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02051,804,092 - 51,820,589 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12051,011,660 - 51,028,149 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,437,139 - 51,453,628 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,678,317 - 51,694,813 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
ZNF426
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.168,697,754 - 8,709,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607411,401,673 - 11,414,035 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zfp426
255 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:94
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000038069
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat

Markers in Region
RH131020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,028,083 - 19,028,290 (+)MAPPERmRatBN7.2
Rnor_6.0821,509,149 - 21,509,355NCBIRnor6.0
Rnor_5.0821,566,495 - 21,566,701UniSTSRnor5.0
RGSC_v3.4819,504,994 - 19,505,200UniSTSRGSC3.4
Celera820,423,747 - 20,423,953UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001079943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC129125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000038069   ⟹   ENSRNOP00000038875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl827,272,831 - 27,286,495 (-)Ensembl
mRatBN7.2 Ensembl818,996,585 - 19,010,248 (-)Ensembl
Rnor_6.0 Ensembl821,477,329 - 21,481,735 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077465   ⟹   ENSRNOP00000069966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl827,272,831 - 27,304,804 (-)Ensembl
mRatBN7.2 Ensembl818,996,688 - 19,028,837 (-)Ensembl
Rnor_6.0 Ensembl821,478,383 - 21,492,801 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095440   ⟹   ENSRNOP00000079954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl827,272,884 - 27,304,805 (-)Ensembl
mRatBN7.2 Ensembl818,996,688 - 19,028,839 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117071   ⟹   ENSRNOP00000084731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl827,272,831 - 27,305,259 (-)Ensembl
mRatBN7.2 Ensembl818,996,585 - 19,028,825 (-)Ensembl
RefSeq Acc Id: NM_001079943   ⟹   NP_001073412
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,057 (-)NCBI
mRatBN7.2818,996,583 - 19,028,811 (-)NCBI
Rnor_6.0821,477,328 - 21,509,876 (-)NCBI
Rnor_5.0821,534,979 - 21,567,260 (-)NCBI
RGSC_v3.4819,472,954 - 19,505,721 (-)RGD
Celera820,391,894 - 20,424,474 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242668   ⟹   XP_006242730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,085 (-)NCBI
mRatBN7.2818,996,583 - 19,029,260 (-)NCBI
Rnor_6.0821,477,328 - 21,511,228 (-)NCBI
Rnor_5.0821,534,979 - 21,567,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242670   ⟹   XP_006242732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,098 (-)NCBI
mRatBN7.2818,996,583 - 19,029,260 (-)NCBI
Rnor_6.0821,477,328 - 21,502,097 (-)NCBI
Rnor_5.0821,534,979 - 21,567,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765983   ⟹   XP_008764205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,082 (-)NCBI
mRatBN7.2818,996,583 - 19,029,259 (-)NCBI
Rnor_6.0821,477,328 - 21,511,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765984   ⟹   XP_008764206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,080 (-)NCBI
mRatBN7.2818,996,583 - 19,029,259 (-)NCBI
Rnor_6.0821,477,328 - 21,511,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595918   ⟹   XP_017451407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,099 (-)NCBI
mRatBN7.2818,996,583 - 19,029,266 (-)NCBI
Rnor_6.0821,477,328 - 21,511,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082171   ⟹   XP_038938099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,099 (-)NCBI
mRatBN7.2818,996,583 - 19,029,265 (-)NCBI
RefSeq Acc Id: XM_039082172   ⟹   XP_038938100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,097 (-)NCBI
mRatBN7.2818,996,583 - 19,029,258 (-)NCBI
RefSeq Acc Id: XM_039082173   ⟹   XP_038938101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,084 (-)NCBI
mRatBN7.2818,996,583 - 19,029,259 (-)NCBI
RefSeq Acc Id: XM_063266162   ⟹   XP_063122232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,098 (-)NCBI
RefSeq Acc Id: XM_063266163   ⟹   XP_063122233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,088 (-)NCBI
RefSeq Acc Id: XM_063266164   ⟹   XP_063122234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,116 (-)NCBI
RefSeq Acc Id: XM_063266165   ⟹   XP_063122235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,097 (-)NCBI
RefSeq Acc Id: XM_063266167   ⟹   XP_063122237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,080 (-)NCBI
RefSeq Acc Id: XM_063266168   ⟹   XP_063122238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,099 (-)NCBI
RefSeq Acc Id: XM_063266169   ⟹   XP_063122239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,100 (-)NCBI
RefSeq Acc Id: XM_063266170   ⟹   XP_063122240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,116 (-)NCBI
RefSeq Acc Id: XM_063266171   ⟹   XP_063122241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8827,272,830 - 27,305,097 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001073412 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427084 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427085 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427086 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427087 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427088 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427089 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427090 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427091 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242730 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242732 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764205 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764206 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938100 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938101 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122232 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122233 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122234 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122235 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122237 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122238 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122239 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122240 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122241 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1L1L7 (Get FASTA)   NCBI Sequence Viewer  
  AAI29126 (Get FASTA)   NCBI Sequence Viewer  
  EDL78375 (Get FASTA)   NCBI Sequence Viewer  
  EDL78376 (Get FASTA)   NCBI Sequence Viewer  
  EDL78378 (Get FASTA)   NCBI Sequence Viewer  
  EDL78379 (Get FASTA)   NCBI Sequence Viewer  
  EDL78380 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038875
  ENSRNOP00000069966
  ENSRNOP00000079954
  ENSRNOP00000084731
  ENSRNOP00000084731.1
RefSeq Acc Id: NP_001073412   ⟸   NM_001079943
- UniProtKB: A1L1L7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006242730   ⟸   XM_006242668
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006242732   ⟸   XM_006242670
- Peptide Label: isoform X1
- UniProtKB: A1L1L7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764206   ⟸   XM_008765984
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008764205   ⟸   XM_008765983
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451407   ⟸   XM_017595918
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000038875   ⟸   ENSRNOT00000038069
Ensembl Acc Id: ENSRNOP00000069966   ⟸   ENSRNOT00000077465
RefSeq Acc Id: XP_038938099   ⟸   XM_039082171
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938101   ⟸   XM_039082173
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938100   ⟸   XM_039082172
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZP77 (UniProtKB/TrEMBL),   A6JNI8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079954   ⟸   ENSRNOT00000095440
Ensembl Acc Id: ENSRNOP00000084731   ⟸   ENSRNOT00000117071
RefSeq Acc Id: XP_063122240   ⟸   XM_063266170
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063122234   ⟸   XM_063266164
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122239   ⟸   XM_063266169
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063122238   ⟸   XM_063266168
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063122232   ⟸   XM_063266162
- Peptide Label: isoform X1
- UniProtKB: A1L1L7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122241   ⟸   XM_063266171
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063122235   ⟸   XM_063266165
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122233   ⟸   XM_063266163
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122237   ⟸   XM_063266167
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L1L7-F1-model_v2 AlphaFold A1L1L7 1-553 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590942 AgrOrtholog
BioCyc Gene G2FUF-31476 BioCyc
Ensembl Genes ENSRNOG00000033624 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000038069 ENTREZGENE
  ENSRNOT00000077465 ENTREZGENE
  ENSRNOT00000095440 ENTREZGENE
  ENSRNOT00000117071 ENTREZGENE
  ENSRNOT00000117071.1 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro KRAB UniProtKB/Swiss-Prot
  KRAB_dom_sf UniProtKB/Swiss-Prot
  Zinc_finger UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:690895 UniProtKB/Swiss-Prot
NCBI Gene 690895 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN 833-RELATED UniProtKB/Swiss-Prot
Pfam KRAB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
  zf-H2C2_2 UniProtKB/Swiss-Prot
PhenoGen Zfp426 PhenoGen
PROSITE KRAB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000033624 RatGTEx
SMART KRAB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A0A0H2UHW3_RAT UniProtKB/TrEMBL
  A0A8I5ZP77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R1Q2 ENTREZGENE, UniProtKB/TrEMBL
  A1L1L7 ENTREZGENE
  A6JNI8 ENTREZGENE, UniProtKB/TrEMBL
  ZN426_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-17 Zfp426  zinc finger protein 426  LOC690895  similar to zinc finger protein 426  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690895  similar to zinc finger protein 426      Symbol and Name status set to provisional 70820 PROVISIONAL