Slc35d4 (solute carrier family 35 member D4) - Rat Genome Database

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Gene: Slc35d4 (solute carrier family 35 member D4) Rattus norvegicus
Analyze
Symbol: Slc35d4 (Ensembl: Tmem241)
Name: solute carrier family 35 member D4 (Ensembl:transmembrane protein 241)
RGD ID: 1590602
Description: Predicted to enable GDP-mannose transmembrane transporter activity; UDP-N-acetylglucosamine transmembrane transporter activity; and antiporter activity. Predicted to be involved in GDP-mannose transmembrane transport and UDP-N-acetylglucosamine transmembrane transport. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Orthologous to human TMEM241 (transmembrane protein 241); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680558; similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1; Tmem241; transmembrane protein 241
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,440,866 - 3,593,099 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,442,212 - 3,593,218 (-)EnsemblGRCr8
mRatBN7.2183,168,072 - 3,318,340 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,168,067 - 3,318,293 (-)EnsemblmRatBN7.2
Rnor_6.0183,407,268 - 3,555,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,445,662 - 3,555,711 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,455,613 - 3,566,225 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,563,806 - 3,663,444 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera183,033,516 - 3,178,887 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Slc35d4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,440,866 - 3,593,099 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,442,212 - 3,593,218 (-)EnsemblGRCr8
mRatBN7.2183,168,072 - 3,318,340 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,168,067 - 3,318,293 (-)EnsemblmRatBN7.2
Rnor_6.0183,407,268 - 3,555,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,445,662 - 3,555,711 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,455,613 - 3,566,225 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,563,806 - 3,663,444 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera183,033,516 - 3,178,887 (-)NCBICelera
Cytogenetic Map18p13NCBI
SLC35D4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,238,522 - 23,437,961 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,197,144 - 23,437,971 (-)Ensemblhg38GRCh38
GRCh371820,875,977 - 21,017,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,129,975 - 19,271,923 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341819,129,978 - 19,271,923NCBI
Celera1817,691,854 - 17,833,802 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1817,730,653 - 17,872,592 (-)NCBIHuRef
CHM1_11820,803,318 - 20,945,245 (-)NCBICHM1_1
T2T-CHM13v2.01823,438,007 - 23,632,036 (-)NCBIT2T-CHM13v2.0
Tmem241
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,113,193 - 12,254,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1812,097,507 - 12,254,594 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381811,980,119 - 12,121,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1811,964,450 - 12,121,537 (-)Ensemblmm10GRCm38
MGSCv371812,140,447 - 12,279,962 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361812,124,839 - 12,265,016 (-)NCBIMGSCv36mm8
Celera1812,221,628 - 12,354,975 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.98NCBI
Tmem241
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540211,530,611 - 11,641,687 (-)Ensembl
ChiLan1.0NW_00495540211,514,232 - 11,641,494 (-)NCBIChiLan1.0ChiLan1.0
TMEM241
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21740,666,268 - 40,868,570 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11826,374,375 - 26,561,158 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01816,464,723 - 16,689,144 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11820,135,340 - 20,316,638 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,173,513 - 20,316,638 (-)EnsemblpanPan2panpan1.1
TMEM241
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,860,366 - 64,978,408 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,869,125 - 64,977,449 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha764,322,677 - 64,431,487 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0764,933,477 - 65,042,360 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl764,933,498 - 65,044,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1764,601,115 - 64,710,125 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0764,616,939 - 64,732,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0764,921,433 - 65,031,381 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem241
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,939,055 - 61,035,768 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365502,780,453 - 2,908,023 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365502,778,188 - 2,877,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM241
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,232,864 - 108,329,730 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16108,227,575 - 108,329,745 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26100,802,125 - 100,903,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM241
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11857,088,629 - 57,238,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1857,088,994 - 57,171,912 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605031,840,047 - 31,976,959 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem241
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247708,706,558 - 8,814,972 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247708,706,531 - 8,814,972 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem241
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11531,533,971 - 31,642,061 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc35d4
2141 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:128
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000029274, ENSRNOT00000074766
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat

Markers in Region
D18Rat133  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8183,481,278 - 3,481,481 (+)Marker Load Pipeline
mRatBN7.2183,206,505 - 3,206,708 (+)MAPPERmRatBN7.2
Rnor_6.0183,447,405 - 3,447,607NCBIRnor6.0
Rnor_5.0183,458,072 - 3,458,274UniSTSRnor5.0
RGSC_v3.4183,555,321 - 3,555,524RGDRGSC3.4
RGSC_v3.4183,555,322 - 3,555,524UniSTSRGSC3.4
Celera183,073,242 - 3,073,444UniSTS
RGSC_v3.1183,555,307 - 3,555,651RGD
SHRSP x BN Map182.52UniSTS
SHRSP x BN Map182.52RGD
Cytogenetic Map18p13UniSTS
D18Rat111  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8183,532,769 - 3,533,010 (+)Marker Load Pipeline
mRatBN7.2183,258,004 - 3,258,245 (+)MAPPERmRatBN7.2
Rnor_6.0183,499,094 - 3,499,334NCBIRnor6.0
Rnor_5.0183,509,665 - 3,509,905UniSTSRnor5.0
RGSC_v3.4183,606,816 - 3,607,247RGDRGSC3.4
RGSC_v3.4183,606,822 - 3,607,062UniSTSRGSC3.4
Celera183,124,576 - 3,124,816UniSTS
RGSC_v3.1183,606,822 - 3,607,062RGD
RH 3.4 Map1844.3UniSTS
RH 3.4 Map1844.3RGD
RH 2.0 Map18894.4RGD
SHRSP x BN Map182.52RGD
Cytogenetic Map18p13UniSTS
D18Got84  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,260,705 - 3,260,860 (+)MAPPERmRatBN7.2
Rnor_6.0183,502,987 - 3,503,141NCBIRnor6.0
Rnor_5.0183,512,462 - 3,512,616UniSTSRnor5.0
RGSC_v3.4183,609,057 - 3,609,212RGDRGSC3.4
RGSC_v3.4183,609,058 - 3,609,212UniSTSRGSC3.4
Celera183,129,172 - 3,129,338UniSTS
RGSC_v3.1183,609,057 - 3,609,212RGD
RH 2.0 Map18826.3RGD
Cytogenetic Map18p13UniSTS
D18Mco1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,287,248 - 3,287,445 (+)MAPPERmRatBN7.2
mRatBN7.2343,706,366 - 43,706,533 (+)MAPPERmRatBN7.2
Rnor_6.0183,524,613 - 3,524,807NCBIRnor6.0
Rnor_6.0345,284,413 - 45,284,579NCBIRnor6.0
Rnor_5.0183,534,088 - 3,534,282UniSTSRnor5.0
Rnor_5.0350,401,022 - 50,401,188UniSTSRnor5.0
RGSC_v3.4183,632,387 - 3,632,581UniSTSRGSC3.4
RGSC_v3.4340,932,267 - 40,932,433UniSTSRGSC3.4
Celera341,756,534 - 41,756,700UniSTS
Celera183,147,855 - 3,148,061UniSTS
RGSC_v3.1361,403,992 - 61,404,152RGD
Cytogenetic Map18p13UniSTS
Cytogenetic Map3q21UniSTS
D18Chm22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,305,702 - 3,305,910 (+)MAPPERmRatBN7.2
Rnor_6.0183,543,065 - 3,543,272NCBIRnor6.0
Rnor_5.0183,552,540 - 3,552,747UniSTSRnor5.0
RGSC_v3.4183,650,839 - 3,651,046UniSTSRGSC3.4
Celera183,166,329 - 3,166,536UniSTS
Cytogenetic Map18p13UniSTS
AI548503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,317,853 - 3,317,952 (+)MAPPERmRatBN7.2
Rnor_6.0183,555,244 - 3,555,342NCBIRnor6.0
Rnor_5.0183,564,719 - 3,564,817UniSTSRnor5.0
RGSC_v3.4183,663,038 - 3,663,136UniSTSRGSC3.4
Celera183,178,390 - 3,178,488UniSTS
RH 3.4 Map1881.0UniSTS
Cytogenetic Map18p13UniSTS
AU049981  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,260,705 - 3,260,878 (+)MAPPERmRatBN7.2
Rnor_6.0183,502,987 - 3,503,159NCBIRnor6.0
Rnor_5.0183,512,462 - 3,512,634UniSTSRnor5.0
RGSC_v3.4183,609,058 - 3,609,230UniSTSRGSC3.4
Celera183,129,172 - 3,129,356UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
20 13 81 209 91 90 59 138 59 6 447 258 18 191 102 117 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001057715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000029274   ⟹   ENSRNOP00000038238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,442,212 - 3,593,082 (-)Ensembl
mRatBN7.2 Ensembl183,168,067 - 3,318,281 (-)Ensembl
Rnor_6.0 Ensembl183,445,662 - 3,555,711 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095890   ⟹   ENSRNOP00000094849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,478,669 - 3,593,202 (-)Ensembl
mRatBN7.2 Ensembl183,203,873 - 3,318,293 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102442   ⟹   ENSRNOP00000088124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,456,253 - 3,593,202 (-)Ensembl
mRatBN7.2 Ensembl183,264,776 - 3,318,281 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000127031   ⟹   ENSRNOP00000106759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,449,487 - 3,593,162 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144008   ⟹   ENSRNOP00000102548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,478,734 - 3,593,195 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147377   ⟹   ENSRNOP00000099725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,478,734 - 3,593,218 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156226   ⟹   ENSRNOP00000109948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,488,028 - 3,593,173 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157891   ⟹   ENSRNOP00000109101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,477,069 - 3,593,218 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000161416   ⟹   ENSRNOP00000109437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,454,733 - 3,593,162 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171237   ⟹   ENSRNOP00000098877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,478,734 - 3,593,195 (-)Ensembl
RefSeq Acc Id: XM_001057715   ⟹   XP_001057715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,470,397 - 3,593,099 (-)NCBI
mRatBN7.2183,202,194 - 3,318,340 (-)NCBI
Rnor_6.0183,444,946 - 3,555,740 (-)NCBI
Rnor_5.0183,455,613 - 3,566,225 (-)NCBI
RGSC_v3.4183,563,806 - 3,663,444 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601069   ⟹   XP_017456558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,440,866 - 3,593,099 (-)NCBI
mRatBN7.2183,168,072 - 3,318,340 (-)NCBI
Rnor_6.0183,407,268 - 3,555,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601071   ⟹   XP_017456560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,482,858 - 3,593,099 (-)NCBI
mRatBN7.2183,214,060 - 3,318,340 (-)NCBI
Rnor_6.0183,454,946 - 3,555,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097282   ⟹   XP_038953210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,453,340 - 3,593,099 (-)NCBI
mRatBN7.2183,181,486 - 3,318,340 (-)NCBI
RefSeq Acc Id: XM_063277641   ⟹   XP_063133711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,497,377 - 3,593,099 (-)NCBI
RefSeq Acc Id: XR_001842036
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,440,866 - 3,593,099 (-)NCBI
mRatBN7.2183,168,072 - 3,318,340 (-)NCBI
Rnor_6.0183,407,268 - 3,555,741 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005496208
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,523,257 - 3,593,099 (-)NCBI
mRatBN7.2183,248,459 - 3,318,340 (-)NCBI
RefSeq Acc Id: XP_001057715   ⟸   XM_001057715
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456558   ⟸   XM_017601069
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456560   ⟸   XM_017601071
- Peptide Label: isoform X4
- UniProtKB: A6KNG3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038238   ⟸   ENSRNOT00000029274
RefSeq Acc Id: XP_038953210   ⟸   XM_039097282
- Peptide Label: isoform X3
- UniProtKB: A6KNG3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094849   ⟸   ENSRNOT00000095890
Ensembl Acc Id: ENSRNOP00000088124   ⟸   ENSRNOT00000102442
RefSeq Acc Id: XP_063133711   ⟸   XM_063277641
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000098877   ⟸   ENSRNOT00000171237
Ensembl Acc Id: ENSRNOP00000109101   ⟸   ENSRNOT00000157891
Ensembl Acc Id: ENSRNOP00000099725   ⟸   ENSRNOT00000147377
Ensembl Acc Id: ENSRNOP00000109437   ⟸   ENSRNOT00000161416
Ensembl Acc Id: ENSRNOP00000106759   ⟸   ENSRNOT00000127031
Ensembl Acc Id: ENSRNOP00000109948   ⟸   ENSRNOT00000156226
Ensembl Acc Id: ENSRNOP00000102548   ⟸   ENSRNOT00000144008

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9Q0-F1-model_v2 AlphaFold D4A9Q0 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700639
Promoter ID:EPDNEW_R11158
Type:initiation region
Name:Tmem241_1
Description:transmembrane protein 241
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0183,555,679 - 3,555,739EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590602 AgrOrtholog
BioCyc Gene G2FUF-8376 BioCyc
Ensembl Genes ENSRNOG00000023412 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029274 ENTREZGENE
  ENSRNOT00000029274.9 UniProtKB/TrEMBL
  ENSRNOT00000095890.2 UniProtKB/TrEMBL
  ENSRNOT00000102442 ENTREZGENE
  ENSRNOT00000102442.2 UniProtKB/TrEMBL
  ENSRNOT00000127031.1 UniProtKB/TrEMBL
  ENSRNOT00000144008.1 UniProtKB/TrEMBL
  ENSRNOT00000147377 ENTREZGENE
  ENSRNOT00000147377.1 UniProtKB/TrEMBL
  ENSRNOT00000156226 ENTREZGENE
  ENSRNOT00000156226.1 UniProtKB/TrEMBL
  ENSRNOT00000157891.1 UniProtKB/TrEMBL
  ENSRNOT00000161416.1 UniProtKB/TrEMBL
  ENSRNOT00000171237.1 UniProtKB/TrEMBL
InterPro TPT_transporter UniProtKB/TrEMBL
KEGG Report rno:680558 UniProtKB/TrEMBL
NCBI Gene 680558 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
PhenoGen Slc35d4 PhenoGen
RatGTEx ENSRNOG00000023412 RatGTEx
UniProt A0A8I6A5V3_RAT UniProtKB/TrEMBL
  A0A8I6ALK9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LB33_RAT UniProtKB/TrEMBL
  A0ABK0LEK3_RAT UniProtKB/TrEMBL
  A0ABK0LFG1_RAT UniProtKB/TrEMBL
  A0ABK0LGX7_RAT UniProtKB/TrEMBL
  A0ABK0LTY2_RAT UniProtKB/TrEMBL
  A6KNG3 ENTREZGENE, UniProtKB/TrEMBL
  D4A9Q0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Slc35d4  solute carrier family 35 member D4  Tmem241  transmembrane protein 241  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Tmem241  transmembrane protein 241  LOC684948  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1  Data merged from RGD:1584408 1643240 APPROVED
2011-12-06 Tmem241  transmembrane protein 241  LOC680558  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680558  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684948  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1      Symbol and Name status set to provisional 70820 PROVISIONAL