Cxhxorf58 (similar to human chromosome X open reading frame 58) - Rat Genome Database

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Gene: Cxhxorf58 (similar to human chromosome X open reading frame 58) Rattus norvegicus
Analyze
Symbol: Cxhxorf58
Name: similar to human chromosome X open reading frame 58
RGD ID: 1590267
Description: Orthologous to human CXorf58 (chromosome X open reading frame 58); INTERACTS WITH bisphenol A; benzo[a]pyrene (ortholog); carbamazepine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC685700; LOC102554431; LOC102556238; LOC685700; putative protein FAM90A12P; putative protein FAM90A12P-like; putative uncharacterized protein CXorf58 homolog; uncharacterized LOC102556238; uncharacterized protein CXorf58 homolog
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,095,606 - 63,151,659 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX63,095,625 - 63,151,659 (-)EnsemblGRCr8
mRatBN7.2X59,101,854 - 59,157,948 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,101,845 - 59,157,865 (-)EnsemblmRatBN7.2
Rnor_6.0X63,452,345 - 63,520,836 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,452,342 - 63,520,836 (-)Ensemblrn6Rnor6.0
Rnor_5.0X64,051,666 - 64,088,224 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X81,746,123 - 81,782,194 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX59,533,640 - 59,587,459 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cxhxorf58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,095,606 - 63,151,659 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX63,095,625 - 63,151,659 (-)EnsemblGRCr8
mRatBN7.2X59,101,854 - 59,157,948 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,101,845 - 59,157,865 (-)EnsemblmRatBN7.2
Rnor_6.0X63,452,345 - 63,520,836 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,452,342 - 63,520,836 (-)Ensemblrn6Rnor6.0
Rnor_5.0X64,051,666 - 64,088,224 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X81,746,123 - 81,782,194 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX59,533,640 - 59,587,459 (-)NCBICelera
Cytogenetic MapXq22NCBI
CXorf58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X23,907,932 - 23,939,509 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX23,907,807 - 23,939,509 (+)Ensemblhg38GRCh38
GRCh37X23,926,123 - 23,957,626 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X23,836,044 - 23,867,545 (+)NCBIBuild 36Build 36hg18NCBI36
CeleraX28,043,612 - 28,078,231 (+)NCBICelera
Cytogenetic MapXp22.11NCBI
HuRefX21,670,170 - 21,700,883 (+)NCBIHuRef
CHM1_1X23,957,348 - 23,988,852 (+)NCBICHM1_1
T2T-CHM13v2.0X23,491,609 - 23,523,191 (+)NCBIT2T-CHM13v2.0
CUNHXorf58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555094,324,047 - 4,347,524 (+)Ensembl
ChiLan1.0NW_0049555094,325,198 - 4,347,495 (+)NCBIChiLan1.0ChiLan1.0
CXHXorf58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X25,708,438 - 25,740,254 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X25,711,827 - 25,743,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X16,506,741 - 16,538,263 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X23,879,977 - 23,911,745 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX23,879,977 - 23,954,897 (+)EnsemblpanPan2panpan1.1
CXHXorf58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X19,555,472 - 19,580,681 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX19,558,729 - 19,605,542 (+)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.0X19,510,781 - 19,536,015 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX19,513,803 - 19,561,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X19,550,627 - 19,575,113 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X19,583,322 - 19,608,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X19,640,098 - 19,664,714 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CXHXorf58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X12,489,552 - 12,518,020 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936624639,716 - 665,130 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936624639,842 - 669,723 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXHXorf58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX20,017,994 - 20,051,343 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X20,020,746 - 20,051,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X21,442,249 - 21,476,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXHXorf58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X22,377,741 - 22,408,644 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX22,380,312 - 22,408,439 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605624,254,661 - 24,285,784 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNHXorf58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624897299,317 - 321,508 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
CXHXorf58
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X52,289,797 - 52,295,580 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cxhxorf58
136 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X6103585667175160Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
BI293172  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,145,829 - 59,145,943 (+)MAPPERmRatBN7.2
Rnor_6.0X63,483,316 - 63,483,429NCBIRnor6.0
Rnor_5.0X64,083,730 - 64,083,843UniSTSRnor5.0
RGSC_v3.4X81,772,397 - 81,772,510UniSTSRGSC3.4
CeleraX59,575,411 - 59,575,524UniSTS
Cytogenetic MapXq31UniSTS
AU048136  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4X81,766,267 - 81,766,468UniSTSRGSC3.4
CeleraX59,568,751 - 59,569,482UniSTS
CeleraX59,569,281 - 59,569,482UniSTS
Cytogenetic MapXq31UniSTS
AU048688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,106,778 - 59,107,009 (+)MAPPERmRatBN7.2
Rnor_6.0X63,457,271 - 63,457,499NCBIRnor6.0
Rnor_5.0X64,056,586 - 64,056,814UniSTSRnor5.0
RGSC_v3.4X81,750,986 - 81,751,214UniSTSRGSC3.4
CeleraX59,538,090 - 59,538,318UniSTS
Cytogenetic MapXq31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 1 10 74 13 9 5 25 5 6 61 45 9 62 6 54 4 6 6

Sequence


Ensembl Acc Id: ENSRNOT00000048127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,095,625 - 63,151,659 (-)Ensembl
mRatBN7.2 EnsemblX59,101,845 - 59,157,865 (-)Ensembl
Rnor_6.0 EnsemblX63,452,342 - 63,520,807 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,515,330 - 63,520,836 (-)Ensembl
RefSeq Acc Id: NM_001419756   ⟹   NP_001406685
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,095,625 - 63,151,659 (-)NCBI
mRatBN7.2X59,101,854 - 59,157,894 (-)NCBI
RefSeq Acc Id: XM_039100133   ⟹   XP_038956061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,139,551 - 63,149,241 (-)NCBI
mRatBN7.2X59,145,786 - 59,155,476 (-)NCBI
RefSeq Acc Id: XM_063280306   ⟹   XP_063136376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,139,551 - 63,149,241 (-)NCBI
RefSeq Acc Id: XM_063280307   ⟹   XP_063136377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,095,606 - 63,149,220 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001406685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956061 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136376 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136377 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96004 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087110
  ENSRNOP00000087110.1
RefSeq Acc Id: XP_038956061   ⟸   XM_039100133
- Peptide Label: isoform X1
- UniProtKB: A6IQ09 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406685   ⟸   NM_001419756
- UniProtKB: A0A8I6GET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136377   ⟸   XM_063280307
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063136376   ⟸   XM_063280306
- Peptide Label: isoform X1
- UniProtKB: A6IQ09 (UniProtKB/TrEMBL)
Protein Domains
Zinc knuckle

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590267 AgrOrtholog
BioCyc Gene G2FUF-2241 BioCyc
Ensembl Genes ENSRNOG00000051365 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048127 ENTREZGENE
  ENSRNOT00000048127.7 UniProtKB/TrEMBL
InterPro FAM90 UniProtKB/TrEMBL
  Znf-CCHC_6 UniProtKB/TrEMBL
NCBI Gene 685700 ENTREZGENE
PANTHER FAMILY WITH SEQUENCE SIMILARITY 90, MEMBER A1B UniProtKB/TrEMBL
  NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 UniProtKB/TrEMBL
  PROTEIN FAM90A1 UniProtKB/TrEMBL
  PROTEIN FAM90A10P-RELATED UniProtKB/TrEMBL
Pfam zf-CCHC_6 UniProtKB/TrEMBL
PhenoGen Cxhxorf58 PhenoGen
RatGTEx ENSRNOG00000051365 RatGTEx
UniProt A0A8I6GET5 ENTREZGENE, UniProtKB/TrEMBL
  A6IQ09 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cxhxorf58  similar to human chromosome X open reading frame 58  LOC685700  hypothetical protein LOC685700  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC685700  hypothetical protein LOC685700  LOC102554431  putative protein FAM90A12P-like  Data merged from RGD:7573234 737654 PROVISIONAL
2015-07-29 LOC685700  hypothetical protein LOC685700  LOC102556238  uncharacterized LOC102556238  Data merged from RGD:7721000 737654 PROVISIONAL
2013-12-18 LOC102554431  putative protein FAM90A12P-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102556238  uncharacterized LOC102556238      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 LOC685700  hypothetical protein LOC685700  LOC100364905  hypothetical protein LOC100364905  Data merged from RGD:2320060 1643240 APPROVED
2010-05-05 LOC100364905  hypothetical protein LOC100364905      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685700  hypothetical protein LOC685700  LOC683398  hypothetical protein LOC683398  Data merged from RGD:1587973 1643240 APPROVED
2006-11-20 LOC685700  hypothetical protein LOC685700      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683398  hypothetical protein LOC683398      Symbol and Name status set to provisional 70820 PROVISIONAL