9030612E09Rikl (RIKEN cDNA 9030612E09 gene like) - Rat Genome Database

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Gene: 9030612E09Rikl (RIKEN cDNA 9030612E09 gene like) Rattus norvegicus
Analyze
Symbol: 9030612E09Rikl
Name: RIKEN cDNA 9030612E09 gene like
RGD ID: 1589988
Description:
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC688390; LOC688390; uncharacterized protein LOC688390
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,243,688 - 48,245,638 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2048,243,688 - 48,245,638 (+)EnsemblGRCr8
mRatBN7.22046,661,531 - 46,663,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,661,531 - 46,663,481 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2048,378,892 - 48,380,841 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,028,909 - 48,030,858 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,713,768 - 48,715,719 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02047,911,018 - 47,912,968 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,911,018 - 47,912,968 (+)Ensemblrn6Rnor6.0
Rnor_5.02049,571,819 - 49,573,769 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42047,080,537 - 47,082,487 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2053,315,987 - 53,317,937 (-)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse:




References

Genomics

Variants

.
Variants in 9030612E09Rikl
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:468
Count of miRNA genes:222
Interacting mature miRNAs:272
Transcripts:ENSRNOT00000038842
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH143624  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22046,661,712 - 46,661,839 (+)MAPPERmRatBN7.2
Rnor_6.02047,911,200 - 47,911,326NCBIRnor6.0
Rnor_5.02049,572,001 - 49,572,127UniSTSRnor5.0
RGSC_v3.42047,080,719 - 47,080,845UniSTSRGSC3.4
Celera2053,317,629 - 53,317,755UniSTS
RH 3.4 Map20557.56UniSTS
Cytogenetic Map20q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 12 63 135 37 35 6 11 6 6 157 106 9 111 30 84 29 10 10

Sequence


Ensembl Acc Id: ENSRNOT00000038842   ⟹   ENSRNOP00000034919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2048,243,688 - 48,245,638 (+)Ensembl
mRatBN7.2 Ensembl2046,661,531 - 46,663,481 (+)Ensembl
Rnor_6.0 Ensembl2047,911,018 - 47,912,968 (+)Ensembl
RefSeq Acc Id: NM_001109496   ⟹   NP_001102966
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,243,688 - 48,245,638 (+)NCBI
mRatBN7.22046,661,531 - 46,663,481 (+)NCBI
Rnor_6.02047,911,018 - 47,912,968 (+)NCBI
Rnor_5.02049,571,819 - 49,573,769 (+)NCBI
RGSC_v3.42047,080,537 - 47,082,487 (+)RGD
Celera2053,315,987 - 53,317,937 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102966 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034919
  ENSRNOP00000034919.3
RefSeq Acc Id: NP_001102966   ⟸   NM_001109496
- UniProtKB: D3Z996 (UniProtKB/TrEMBL),   A6K6X4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000034919   ⟸   ENSRNOT00000038842

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z996-F1-model_v2 AlphaFold D3Z996 1-147 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3349 BioCyc
Ensembl Genes ENSRNOG00000026080 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038842 ENTREZGENE
  ENSRNOT00000038842.5 UniProtKB/TrEMBL
KEGG Report rno:688390 UniProtKB/TrEMBL
NCBI Gene 688390 ENTREZGENE
PhenoGen 9030612E09Rikl PhenoGen
RatGTEx ENSRNOG00000026080 RatGTEx
UniProt A6K6X4 ENTREZGENE, UniProtKB/TrEMBL
  D3Z996 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 9030612E09Rikl  RIKEN cDNA 9030612E09 gene like  LOC688390  hypothetical protein LOC688390  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC688390  hypothetical protein LOC688390      Symbol and Name status set to provisional 70820 PROVISIONAL