Apcdd1 (APC down-regulated 1) - Rat Genome Database

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Gene: Apcdd1 (APC down-regulated 1) Rattus norvegicus
Analyze
Symbol: Apcdd1
Name: APC down-regulated 1
RGD ID: 1589962
Description: Predicted to enable Wnt-protein binding activity and identical protein binding activity. Predicted to be involved in hair follicle development; negative regulation of Wnt signaling pathway; and regulation of odontogenesis of dentin-containing tooth. Predicted to act upstream of or within astrocyte cell migration. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in hypotrichosis 1. Orthologous to human APCDD1 (APC down-regulated 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adenomatosis polyposis coli down-regulated 1; LOC689616; similar to adenomatosis polyposis coli down-regulated 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81858,655,696 - 58,686,359 (+)NCBIGRCr8
mRatBN7.21856,385,398 - 56,416,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1856,385,264 - 56,416,070 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01858,270,398 - 58,300,982 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1858,270,410 - 58,301,002 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01857,494,395 - 57,523,899 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41859,088,709 - 59,091,205 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1854,532,957 - 54,563,430 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Apcdd1Ratchromosome 18p deletion syndrome  ISOAPCDD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Del(18p) syndromeClinVarPMID:31690835
Apcdd1Ratdystonia  ISOAPCDD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Dystonic disorderClinVarPMID:25817843 and PMID:28492532
Apcdd1Rathypotrichosis 1  ISOAPCDD1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10878665 more ...
Apcdd1Ratintellectual disability  ISOAPCDD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Apcdd1Rathypotrichosis 1  ISOAPCDD1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20393562
Apcdd1Ratobesity  ISOAPCDD1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28242765
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Apcdd1Rathypotrichosis 1  ISOAPCDD1 (Homo sapiens)7240710 OMIM 

1 to 20 of 100 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Apcdd1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of APCDD1 mRNA]CTDPMID:31150632
Apcdd1Rat1,2-dimethylhydrazine increases expressionISOApcdd1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of APCDD1 mRNACTDPMID:22206623
Apcdd1Rat1-nitropyrene decreases expressionISOAPCDD1 (Homo sapiens)64804641-nitropyrene results in decreased expression of APCDD1 mRNACTDPMID:19041380
Apcdd1Rat17beta-estradiol decreases expressionISOApcdd1 (Mus musculus)6480464Estradiol results in decreased expression of APCDD1 mRNACTDPMID:14664709
Apcdd1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of APCDD1 mRNACTDPMID:32145629
Apcdd1Rat2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISOApcdd1 (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
Apcdd1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOApcdd1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with EGF protein] results in decreased expression of APCDD1 mRNACTDPMID:16054899
Apcdd1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOAPCDD1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of APCDD1 mRNACTDPMID:36370075
Apcdd1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of APCDD1 mRNACTDPMID:34747641
Apcdd1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of APCDD1 mRNACTDPMID:32109520
Apcdd1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAPCDD1 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of APCDD1 mRNACTDPMID:22298810
Apcdd1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOApcdd1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of APCDD1 mRNACTDPMID:16054899 and PMID:19933214
Apcdd1Rat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
Apcdd1Rat2,4-diaminotoluene increases expressionISOApcdd1 (Mus musculus)64804642 and 4-diaminotoluene results in increased expression of APCDD1 mRNACTDPMID:20713471
Apcdd1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOApcdd1 (Mus musculus)6480464[Dexamethasone co-treated with Rosiglitazone co-treated with 1-Methyl-3-isobutylxanthine co-treated with INS1 protein] results in increased expression of APCDD1 mRNA more ...CTDPMID:16054899 and PMID:28242765
Apcdd1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOAPCDD1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of APCDD1 mRNA more ...CTDPMID:28242765 and PMID:28628672
Apcdd1Rat3-methylcholanthrene increases expressionISOApcdd1 (Mus musculus)6480464Methylcholanthrene results in increased expression of APCDD1 mRNACTDPMID:20713471
Apcdd1Rat4,4'-sulfonyldiphenol increases expressionISOAPCDD1 (Homo sapiens)6480464bisphenol S results in increased expression of APCDD1 mRNACTDPMID:27685785
Apcdd1Rat4,4'-sulfonyldiphenol multiple interactionsISOAPCDD1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of APCDD1 mRNACTDPMID:28628672
Apcdd1Rat4-hydroxyphenyl retinamide decreases expressionISOApcdd1 (Mus musculus)6480464Fenretinide results in decreased expression of APCDD1 mRNACTDPMID:28973697

1 to 20 of 100 rows

Biological Process
1 to 9 of 9 rows

  
1 to 9 of 9 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Apcdd1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Apcdd1Ratplasma membrane located_inISOAPCDD1 (Homo sapiens)1624291 PMID:20393562RGDPMID:20393562
Apcdd1Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Apcdd1Ratplasma membrane located_inIEAInterPro:IPR0424251600115GO_REF:0000002InterProGO_REF:0000002
Apcdd1Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Apcdd1Ratplasma membrane is_active_inIBAPANTHER:PTN002826827 and UniProtKB:Q8J0251600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:20393562   PMID:22500632   PMID:26170146  



Apcdd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81858,655,696 - 58,686,359 (+)NCBIGRCr8
mRatBN7.21856,385,398 - 56,416,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1856,385,264 - 56,416,070 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01858,270,398 - 58,300,982 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1858,270,410 - 58,301,002 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01857,494,395 - 57,523,899 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41859,088,709 - 59,091,205 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1854,532,957 - 54,563,430 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
APCDD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381810,454,635 - 10,489,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1810,454,635 - 10,489,949 (+)EnsemblGRCh38hg38GRCh38
GRCh371810,454,632 - 10,489,946 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361810,444,625 - 10,478,694 (+)NCBINCBI36Build 36hg18NCBI36
Build 341810,444,624 - 10,478,692NCBI
Celera1810,337,906 - 10,371,983 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef1810,384,075 - 10,449,491 (+)NCBIHuRef
CHM1_11810,454,080 - 10,487,921 (+)NCBICHM1_1
T2T-CHM13v2.01810,616,628 - 10,652,095 (+)NCBIT2T-CHM13v2.0
Apcdd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391863,055,398 - 63,086,886 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1863,055,302 - 63,094,250 (+)EnsemblGRCm39 Ensembl
GRCm381862,922,327 - 62,953,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1862,922,231 - 62,961,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv371863,081,981 - 63,112,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361863,047,268 - 63,081,347 (+)NCBIMGSCv36mm8
Celera1864,198,888 - 64,230,228 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1835.95NCBI
Apcdd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554021,930,037 - 1,947,765 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554021,932,685 - 1,947,680 (-)NCBIChiLan1.0ChiLan1.0
APCDD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21727,964,444 - 27,998,335 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11813,657,039 - 13,690,930 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0183,799,425 - 3,834,557 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,083,649 - 6,117,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,083,649 - 6,117,276 (-)Ensemblpanpan1.1panPan2
APCDD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1776,336,502 - 76,368,695 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl776,336,547 - 76,367,267 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha775,740,632 - 75,772,090 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0776,392,764 - 76,424,240 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl776,392,562 - 76,423,223 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1776,091,150 - 76,122,611 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0776,119,370 - 76,149,800 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0776,423,530 - 76,454,975 (+)NCBIUU_Cfam_GSD_1.0
Apcdd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049441,988,024 - 2,066,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366261,216,323 - 1,237,792 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366261,217,240 - 1,237,741 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APCDD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl697,992,233 - 98,026,766 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1697,991,418 - 98,026,590 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
APCDD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11869,283,352 - 69,317,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1869,283,650 - 69,318,393 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605044,258,169 - 44,292,411 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apcdd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,725,513 - 18,776,613 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477018,748,299 - 18,776,100 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Apcdd1
133 total Variants

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:21
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000067554
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 63 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat

1 to 10 of 63 rows
AU015601  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21856,386,796 - 56,387,024 (+)MAPPERmRatBN7.2
Rnor_6.01858,271,507 - 58,271,734NCBIRnor6.0
Rnor_5.01857,495,504 - 57,495,731UniSTSRnor5.0
Celera1854,534,065 - 54,534,292UniSTS
Cytogenetic Map18q12.1UniSTS
BI291322  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21856,391,951 - 56,392,156 (+)MAPPERmRatBN7.2
Rnor_6.01858,276,662 - 58,276,866NCBIRnor6.0
Rnor_5.01857,500,659 - 57,500,863UniSTSRnor5.0
Celera1854,539,220 - 54,539,424UniSTS
RH 3.4 Map18571.7UniSTS
Cytogenetic Map18q12.1UniSTS
RH137284  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21856,415,659 - 56,415,843 (+)MAPPERmRatBN7.2
Rnor_6.01858,300,577 - 58,300,760NCBIRnor6.0
Rnor_5.01857,523,494 - 57,523,677UniSTSRnor5.0
RGSC_v3.41859,092,710 - 59,092,893UniSTSRGSC3.4
Celera1854,563,025 - 54,563,208UniSTS
RH 3.4 Map18555.1UniSTS
Cytogenetic Map18q12.1UniSTS
RH140582  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21856,414,943 - 56,415,138 (+)MAPPERmRatBN7.2
Rnor_6.01858,299,861 - 58,300,055NCBIRnor6.0
Rnor_5.01857,522,778 - 57,522,972UniSTSRnor5.0
Celera1854,562,309 - 54,562,503UniSTS
RH 3.4 Map18555.1UniSTS
Cytogenetic Map18q12.1UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000067554   ⟹   ENSRNOP00000059242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1856,385,264 - 56,416,070 (+)Ensembl
Rnor_6.0 Ensembl1858,270,410 - 58,301,002 (+)Ensembl
RefSeq Acc Id: XM_001071384   ⟹   XP_001071384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81858,655,696 - 58,686,359 (+)NCBI
mRatBN7.21856,385,398 - 56,416,065 (+)NCBI
Rnor_6.01858,270,398 - 58,300,982 (+)NCBI
Rnor_5.01857,494,395 - 57,523,899 (+)NCBI
RGSC_v3.41859,088,709 - 59,091,205 (+)RGD
Sequence:
Protein RefSeqs NP_001419492 (Get FASTA)   NCBI Sequence Viewer  
  XP_001071384 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059242
  ENSRNOP00000059242.2
RefSeq Acc Id: XP_001071384   ⟸   XM_001071384
- Sequence:
Ensembl Acc Id: ENSRNOP00000059242   ⟸   ENSRNOT00000067554
APCDD1

Name Modeler Protein Id AA Range Protein Structure
AF-F1M5Q7-F1-model_v2 AlphaFold F1M5Q7 1-514 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700825
Promoter ID:EPDNEW_R11349
Type:single initiation site
Name:Apcdd1_1
Description:APC down-regulated 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01858,270,413 - 58,270,473EPDNEW


1 to 16 of 16 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-7276 BioCyc
Ensembl Genes ENSRNOG00000043304 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067554 ENTREZGENE
  ENSRNOT00000067554.4 UniProtKB/TrEMBL
InterPro APCDD1 UniProtKB/TrEMBL
  APCDD1 UniProtKB/TrEMBL
KEGG Report rno:689616 UniProtKB/TrEMBL
NCBI Gene 689616 ENTREZGENE
PANTHER PROTEIN APCDD1 UniProtKB/TrEMBL
  PTHR31021 UniProtKB/TrEMBL
Pfam APCDDC UniProtKB/TrEMBL
PhenoGen Apcdd1 PhenoGen
RatGTEx ENSRNOG00000043304 RatGTEx
SMART APCDDC UniProtKB/TrEMBL
UniProt A6IXL1 ENTREZGENE, UniProtKB/TrEMBL
  F1M5Q7 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-01 Apcdd1  APC down-regulated 1  Apcdd1  adenomatosis polyposis coli down-regulated 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Apcdd1  adenomatosis polyposis coli down-regulated 1  LOC682861  similar to adenomatosis polyposis coli down-regulated 1  Data merged from RGD:1593987 1643240 APPROVED
2008-03-06 Apcdd1  adenomatosis polyposis coli down-regulated 1  LOC689616  similar to adenomatosis polyposis coli down-regulated 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC689616  similar to adenomatosis polyposis coli down-regulated 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682861  similar to adenomatosis polyposis coli down-regulated 1      Symbol and Name status set to provisional 70820 PROVISIONAL