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Gene: Sh3rf3 (SH3 domain containing ring finger 3) Rattus norvegicus

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Symbol:

Sh3rf3

Name:

SH3 domain containing ring finger 3

RGD ID:

1589772

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of JNK cascade; positive regulation of proteasomal ubiquitin-dependent protein catabolic process; and protein autoubiquitination. Orthologous to human SH3RF3 (SH3 domain containing ring finger 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase SH3RF3; LOC294557; SH3 domain-containing RING finger protein 3; SH3 multiple domains 4; Sh3md4; similar to SH3 domain containing ring finger 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SH3RF3 (SH3 domain containing ring finger 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Sh3rf3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sh3rf3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SH3RF3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SH3RF3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sh3rf3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SH3RF3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SH3RF3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sh3rf3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sh3rf3 (SH3 domain containing ring finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SH3RF3 (SH3 domain containing ring finger 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sh3rf3 (SH3 domain containing ring finger 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	POSH	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	POSH	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sh3rf3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	27,306,937 - 27,642,315 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	27,308,188 - 27,640,544 (+)	Ensembl				GRCr8
mRatBN7.2	20	26,765,278 - 27,099,261 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,765,015 - 27,099,257 (+)	Ensembl				mRatBN7.2
Rnor_6.0	20	28,355,671 - 28,720,020 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	28,572,242 - 28,717,243 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	30,292,511 - 30,527,551 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	28,211,679 - 28,542,578 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amphetamine abuse (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

cyclosporin A (ISO)

dimethylselenide (ISO)

dioxygen (EXP)

doxorubicin (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

ethylparaben (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydroxyl (ISO)

L-methionine (ISO)

Lasiocarpine (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

permethrin (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sulforaphane (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of apoptotic process (IBA)

positive regulation of JNK cascade (IBA,IEA,ISO)

protein autoubiquitination (IEA,ISO)

protein ubiquitination (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IBA,IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20696164	PMID:36694058

Genomics

Comparative Map Data

Sh3rf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	27,306,937 - 27,642,315 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	27,308,188 - 27,640,544 (+)	Ensembl				GRCr8
mRatBN7.2	20	26,765,278 - 27,099,261 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,765,015 - 27,099,257 (+)	Ensembl				mRatBN7.2
Rnor_6.0	20	28,355,671 - 28,720,020 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	28,572,242 - 28,717,243 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	30,292,511 - 30,527,551 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	28,211,679 - 28,542,578 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

SH3RF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	109,129,205 - 109,504,634 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	109,129,205 - 109,504,634 (+)	Ensembl			hg38	GRCh38
GRCh37	2	109,745,661 - 110,262,211 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	109,112,429 - 109,432,377 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 36	2	109,616,360 - 109,619,489 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	104,055,768 - 104,430,967 (+)	NCBI		Celera
Cytogenetic Map	2	q13	NCBI
HuRef	2	103,343,871 - 103,705,816 (+)	NCBI		HuRef
HuRef	2	103,707,988 - 103,718,182 (+)	NCBI		HuRef
CHM1_1	2	110,256,805 - 110,266,403 (+)	NCBI		CHM1_1
CHM1_1	2	109,750,291 - 110,111,614 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	109,589,723 - 109,965,692 (+)	NCBI		T2T-CHM13v2.0

Sh3rf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	58,649,181 - 58,974,738 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	58,649,181 - 58,974,738 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	58,811,908 - 59,138,916 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	58,813,359 - 59,138,916 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	58,276,107 - 58,601,664 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	58,379,278 - 58,534,271 (+)	NCBI		MGSCv36	mm8
Celera	10	59,913,446 - 60,238,898 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.41	NCBI

Sh3rf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	12,539,851 - 12,614,804 (+)	Ensembl
ChiLan1.0	NW_004955470	12,446,604 - 12,615,689 (+)	NCBI	ChiLan1.0	ChiLan1.0

SH3RF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	18,190,518 - 18,564,982 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	18,193,284 - 18,567,272 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	92,137,951 - 92,519,627 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	111,066,794 - 111,222,876 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	110,848,452 - 111,219,915 (+)	Ensembl			panPan2	panpan1.1

SH3RF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	34,374,376 - 34,730,548 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	34,376,326 - 34,730,657 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	34,298,608 - 34,653,751 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	35,228,013 - 35,582,478 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	35,221,453 - 35,582,954 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	34,957,269 - 35,312,019 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	35,238,124 - 35,595,007 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	35,429,247 - 35,783,154 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sh3rf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	91,438,829 - 91,570,903 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936829	826,762 - 956,056 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936829	714,518 - 914,894 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SH3RF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	47,133,532 - 47,339,541 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	47,128,448 - 47,339,569 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	49,215,802 - 49,373,969 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SH3RF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	12,657,402 - 13,030,467 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	12,871,670 - 13,030,464 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666080	6,664,166 - 7,043,832 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sh3rf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	12,233,658 - 12,318,809 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	12,109,084 - 12,319,732 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sh3rf3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	24,942,992 - 24,943,673 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sh3rf3
2492 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	120
Count of miRNA genes:	88
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000072485, ENSRNOT00000074799
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Markers in Region

AFM324zg9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	95,182,716 - 95,183,352 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	26,841,354 - 26,841,555 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	28,463,127 - 28,463,327	NCBI	Rnor6.0
Rnor_6.0	5	98,291,978 - 98,292,613	NCBI	Rnor6.0
Rnor_5.0	5	102,332,127 - 102,332,762	UniSTS	Rnor5.0
Rnor_5.0	20	30,271,809 - 30,272,009	UniSTS	Rnor5.0
RGSC_v3.4	5	99,419,206 - 99,419,841	UniSTS	RGSC3.4
Celera	20	28,285,876 - 28,286,058	UniSTS
Celera	5	93,755,966 - 93,756,601	UniSTS
Cytogenetic Map	20	q13	UniSTS

G46449

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	27,092,002 - 27,092,123 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	28,712,760 - 28,712,880	NCBI	Rnor6.0
Rnor_5.0	20	30,520,291 - 30,520,411	UniSTS	Rnor5.0
Celera	20	28,535,324 - 28,535,438	UniSTS
Cytogenetic Map	20	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	84	83	52	86	52	6	332	186	11	139	70	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_017588064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010061102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072485 ⟹ ENSRNOP00000064987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,308,188 - 27,640,544 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,765,015 - 27,099,257 (+)	Ensembl
Rnor_6.0 Ensembl	20	28,572,242 - 28,717,243 (+)	Ensembl

RefSeq Acc Id:

XM_017601803 ⟹ XP_017457292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,306,937 - 27,642,315 (+)	NCBI
mRatBN7.2	20	26,765,278 - 27,099,261 (+)	NCBI
Rnor_6.0	20	28,355,671 - 28,720,020 (+)	NCBI

Sequence:

show sequence

CCTCCCCCATGCTGCTTGGAGCGTCCTGGCTGTGCGCGTCCAAGGCGGCAGCCACCGCAGCTCC
GGGCGAGGGCGACGACAGGCAGGGTGAGCAGCAGAGAGGGGACCAGGCGAGGACTGAAGAGGAT
ATGGACGAGTCATCGCTGCTGGATTTGTTGGAATGCTCTGTGTGCCTGGAGCGCCTGGACACCA
CTGCCAAGGTGTTGCCATGCCAGCACACCTTCTGCCGACGCTGTCTGGAGAGCATCGTGTGCTC
GCGCCACGAGCTACGCTGTCCCGAGTGCCGCATCCTGGTGGGCTGCGGGGTGGACGAGCTGCCG
GCCAACATACTGCTAGTGCGCCTGCTGGATGGCATCCGCCAGAGGCCCCGCACAGGCGCCAGCC
CTGGGAGCAGCCCTCCTGCGCGCCCGGGGCCGGGTACGTTCCCAGCGTTGGCAGGCGGTGCTGG
AGGGGCGACAGGCAGTCCCCCGCGTTCTCCCGTCTTTCTCTCAGCGGCAGCAGGCAGCTCTACC
TCCTCCAGTTTGTGCGACGCGGCGACTAATAGGAGCGTGCCTGTGGCTAAGAACCTATCCCAGC
TTCCCTACGCCAAGGCCCTCTACAGCTATGAGGGAAAAGAACCCGGTGACCTCAAGTTCAACAA
AGGGGACATCATCATTCTGAGACGCAAGGTTGATGAGAACTGGTACCATGGGGAGCTTCAGGGC
ACACATGGCTTCCTCCCAGCCAGCTACATCCAGTGCATGAGGCCCTTGCCGCAGACTCTGCCCC
AAGGCAAAGCACTTTACGATTTTGAGATGAAAGACAGAGACCAAGACAAAGATTGTCTGACCTT
CACTAAGGATGAAGTTTTAACTGTGATCCGGAGAGTGGATGATAATTGGGCCGAAGGCATGCTG
GGAGACAAGATTGGCATCTTCCCTCTCCTGTACGTGGAGCTCAACGACTCCGCCAAACAACTCA
TTGAGATGGACAAGCTGTGCCCAGCTGCCACCACTGCATACAACTATGATGCCCTCTTGTCCTC
TGACCCCAGCACAGTCGCCAATGTGGCCCCAGGTCCCACCCTAAGTAGCTCAGGGGCAGTCAGT
GCCTTTCAACGACGTGTGGACAGCAAGAAGAATGCCAAGAAGCGCCACTCCTTCACTGCGCTCA
GTGTGACTCACAAATCCTCACAGGCCTCCAGTCACAGGCACTCCATGGAAATTAGTGCCCCGGT
GCTGATCAGCTCCAGCGACCCACGTGCTGCAGCTAGGATTGGGGAGCTTGCCCATCTGTCCTGC
GCTGTACCCACCCAGGACTCCTCTTCAGCTGGACCTGTCCCCACAGCCATCCCTCGAGCTGCCG
CAGTGGCTGGAGAACAGGGCATGTCTCCCAAAGTCCAGCTGCCCCTCAACATGTACCTGGCTCT
CTATGCATACAAGCCCCAGAAGAATGATGAGCTGGAGCTTCGCAAGGGTGAGATGTACCGTGTA
CTCGAGAAGTGCCAGGATGGCTGGTTCAAGGGGGCGTCATTGAAAACCGGGATCTCGGGGGTGT
TCCCCGGCAACTATGTGACACCTGTCTCCAGGGTTCCTGGAGGAGCTGGGTCACCCTGGAATAA
TGTGCTTGGAGGGTCTCCATTGGCCAAGGGAATGGCCACCATTATGCACCCTGGAGGTGGAAGT
CTGAGCAGCCCAGCCACTGCCACCAGGTCTGCTCTGCCTCTCACCACACTGCAGGACCATATGC
AGCACCCAGCCACCTCCCTACCAACAGGCAGCTGCCTTCGACACACAGCTCAACCAGCAGCCAG
CCAAGCTGGGGGCACCACCATCCCAACAGCTACCCATCCCTCGGCCCAGGCCCTGGACCGTCCA
ACTGCCACCGTGTCACCCCTGCGCACTCAGACTTCTCCATCCCGCCTACCCAGCACCAGCCTCC
GACCCCGCTCCGTGGTGTCCCCACAGCACAGCCAGCAGCCCCCGACACAGATGTGTCCCCGGCC
AGCCATCCCTTTCACATCAGCAGCCTCCGCCATCACACCCCCCAACGTCAGTGCCGCCAACCTC
AGTGGGGAGGTTGGAGGGACACCCACCAGCGGCCTGTCCACACCCAGCCCCATCAACGCAGGGT
ACAAACCAGATGACAAGAAAAACGAAAAGAAGGAGAAGAAGAGCGGACTGTTGAAGCTGCTGGC
TGGGGCCTCCACCAAGAAAAAGGCGCGCTCCCCGCCATCTGTATCTCCGACCCACGACCCCCAG
TCGGCCATGGATTCCTCGCTGCAGGGTGCCGTGGGCCCCGAAGTGTCCCCATTGACCATCCACG
GCAGGGCAGGCTCCTGCCCCGTAGAGAGTGAGATGCAGGGCGCCATTGGGCTGGAGCCGCTGCA
CAGAAAAGCAGGCTCCTTAGATCTGAATTTCTCTTTGTCCCCCTCCCGGCAAGCAACTCTGTCC
ACGGCTTCCATTCGCCCTGAACCTAAGCCACTGCCCAGAGAGAGGTACCGTGTGGTGGTCTCCT
ACCCTCCACAGAGTGAAGCAGAGATCGAGCTAAAGGAAGGTGATATTGTCTTCGTGCACAGGAA
GCATGAAGATGGCTGGTTCAAGGGGACTCTGCAGAGGAATGGCCGCACAGGTCTCTTCCCAGGC
AGCTTTGTGGAGAGCTTCTGAGGGCCATTGCTCCTGGCCAGCTTCTGCTGTCTGGGGTAGAGTG
CCCAAGAAGACACTATGTGAACAGAGGACACCTTCTCACCTAGGTCTGAGGTTCTTTCTGAGGT
TCTTTCTAAAGCACCGACCAGGAACAAGCAGACTGGGGCGATGACTCTCCCATGAAGTCCTTAC
TGCAAGCACACATGGGCAGTGGCCTGTTTGTGAAGGAAGGCCGTACCCTGTGATGGATGGAAGC
ACATGTGGGTGTGAGAGAGAGAGAGCAGTAGCACAGAAAACGTTACCCATGGAGACAAACACAC
TACCACGCCACCCGGCGGCTACAGCATTGTTAGCTGTCTGTAAGGTTGGGAGCCTGGGAGGGTA
TAGAGTGGGGCCACATGCTAGGGCTGACAGCAAGCTTCTTCCCTGCCTTCCCGGGGTCCTCTAT
ATACCTCTGTCACCTGACATTGAGCCCCACAGCCAGGGCACTCATGGTTCAGGAGCCTCAGAGA
AGGGCTGTGAGTCTCCCAAGGTGTCCAGTGGGGTCTTGTGGGGCACAGGAGCAGAATCCTCAGG
CTTTGTCTCCCACCAGGACAATGAGCAGCACCGCCTGGTTCCACCGCCGCTGTCGTCCCATTGC
TTCCTTCTTATGGCACACCTTTTTAATGTACGACTCTGAGACTTTATATATTTCTAATAGGTCA
GACGCTGCATATTTTTCATACACCTGGTGCTGATTTTTTGTAAAACTAGAAACCAACTTGGGTA
AGCTTCAAGGGGGAAAAAAAGGGAGGTAACATCAAAAGAAAGTTTTATATATTTCCCAAATGAA
GTTTGGAGCATATTGAGGAATTCCTATCTGTAATGTCAAAATGCTGGCTGGTGCCCCACGAGGC
GAGGGGGAGGCCTGCCAAGAGGGGCACATGGAGTTGGAGAGTGCCTTTCCTGGCTGTTGGAAAC
AGGCTAAACCATAAGCTCCATCTTGGTAGGAGTAATTATGACTAAAAAGTGGAAACCTATTAAG
GAATGGATACATGGATACTGCCTTTTTGTGTGGCAGAAAGCGCGCGCGCGCGCACACACACACA
CACACACACACACACACACACACACACACACACGCAGGCACGCGCATACACTGACCCCAGAAGC
TTCCTTTGATTGCTTTAGAGAGAATGACTAAAAATAACATTCTTAAAGGGCGTCTTGCTGCCAA
AATGCAGCTCATACAACAGCTCAAATCCACTATCTTGCAAAGGTTTTTTTCTCCTTTTCAAAAG
TAAATAACTTGCCCTATGCGGCCAGGCAAACTCCATCTGCTAGAGACCAAAGGTACAGCGACAG
GCACGAGCCTGATGCTTACTTTAGACTTACAGGCCCGGAGACGCTGGAAAGGAAGGGGCTTGGT
CTGCTCTGAGGCCTCCCTGTAAGGCCACTGTCACAGCAGTGTGCTTCTCGGGAGGCTGGCCTGG
TGTTACTGTCACACCTTAGGAACACATTCTTGTTTTTCAAAAATATCCCGAAAATAGCAATTTG
TGAGCCTGTGTGTACATTTTTATAAACTCACACAGCCCTGTGTATAGCCTTTGGTAGCAGAGGG
CATTACTGCTTTCCATAATAAAATTAAGACCATGTATCCTCAACGTTCCTATTTGGGGATATGA
CCAGCTAGTTGTGACTGCCGGGTGGCTACCACATGGAAGCCAGCACACCCAGAGACAGTCTCAC
ACCCCCCCAGGTGACAACACACTTACTGGACATAAAAAACTGTTCTGAGCCAGCTAGAAACTCT
AGGTCAAGCATAAGGATCCCTGTGTGCAGGCTCAATGACAGCCACAGTATCTACTCAGTGTCAC
CGATAAACTACTTGCCCATCCATGAACAAAAGATCTAGGTGTGGTTCAACCCTTGGTGTCACCG
TGGAGATACACAGATCTACACCCTGGGGGAGACATGTTCTCAGTGGAACCAGAGCTAACTCCAG
ATTCCAGACAATAAGAACAAGGCCTTTTCCTCCTAAACAAGGTCAACTGAGCCCACAGAACAGA
CTTGACCTGAAGCTGTCCTCCACGAAGCACCGGCTGCTTCATGCAGAGGAAGGAGCAGCTTCAT
AGAAAGCTAAGGGAAGTATCAAAGAATCTTTGGGAAACATCAGCTGGATCCTCTCGCAGCCAGG
TTTACACTGGGTCCACCCTGGGGAGAGAAGCAGGGCCCTGGGGCTCATCCTCAGCTGGGCCTCC
TGAGATACACAATGAGCCCAATGGTCTGAGCATTTTGAATACTCAAGCCCATTAGCCTTCAAAA
TCCTGTTTTCCACAGTCAATGGCAGAAAAGAGGTTCCTTTCCTAAGGTCATCTTCCCTTGAGGA
CACGTCTTGGCTACCAAACTGAAGCCAGCACCTCATCTAGAACCTTCACATCCCGTCCCTGCCA
GCAGCATGTGCCCTTACTCAGACACTCGGATTTGGTGGCCACGTGGGTTTCATTCAGTAGTTCT
CAGCCCTTCGAATAGAGGGTCAGCAAGGAGACAGGACAGTTTAGCCCCCAGAGGACTGATGGAA
CACGAGAGACAAGAGGAGGCATAAATACAAGGCGGGGCACCCCAAAACCAGCCCAGTAGACATG
GAAACCTTTGTACTTTGCACAACACACACCGAGACACATGCACACATGTGCTCCCAACCCCACA
TATGTTTTTATTATACACCAATGTCAGTGTGTGATTTTAGAGGAATTGACATAGTGGCAAAAGC
TGATGCCTGTGTTTGAGTCTTTAAATAAAACTGAACATGGAGA

hide sequence

RefSeq Acc Id:

XM_017601804 ⟹ XP_017457293

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,488,772 - 27,642,315 (+)	NCBI
mRatBN7.2	20	26,948,768 - 27,099,261 (+)	NCBI
Rnor_6.0	20	28,568,631 - 28,720,020 (+)	NCBI

Sequence:

show sequence

GCAGCATAGCCCTATTAATGCAGCAGACAGAAAACTTCCAGGCATAGGAGCCCAGCAACGGTGC
TGTGGATTTGGGGGGGGGGCTGTGTCCCGCAGAGCCCATAAATTTTAAGTGCACATCATTTTGT
GGAGTCGTCGTGTTACCTACCATGGATGGAAAAGCGTGCCCTTGCCCCTGTGCCAAGGGGTTTG
GCTCCCTCCAATGAGGGAAGCAATGAAGGCCACTGGAGCTTATAGGGTAGGCTCCAGTTTACAC
CTGTGCAGCCAGCACACAGTGTAGTCTATTGAGAGCAGAGTAGAGGTAGGCAAGTGGACAATCA
AGGTTATAGCAGTAGATCAACAATCTTCGATGGGAAAGGTTAAGGTTTGGGGAAGGATGAACAC
AGTTAGATGAAGATTCCACAGTCAGGATGAGGAAAGTAGGAAGAAGGGCTAAACAGAGAGAGCC
TATGGGATGTGTGGAAGACCTGCCTTCCAAACAATACAATATAAACAATATGATGTGCCTTCTA
AATGATATGAAATCTACTGCTCAGTATGGCAGAGTGGTATGGATAGACTGGGGAGCTGGGGCAC
ACAGAAGCAAGTAGAGGTGGGCCTGTAACAGTGGTGGAGTGAAGTCTAAGCTTCTAGTTCTTTG
GAAAGTTAGTTATGCCAAATGATGCTTTGCCAGGGCACACAGGCTAAAGCAAACTGGAAGACTT
TTCCTGAAACAGACACAGATGAGAGGATATCTGAATATAGCAAACACATGAAAGAACGCTTGAC
GAAGCAGTATAAATGTGGCCCCACAGACAGTGGGACACGGGCACTGAACCCTGATTGGTTTGCT
CCACCTCACTATTCTTCACTAAAGATGTTCATGTATTGGTTCACCTTAGTGTTGTTGAGCTCAA
CTTGTAATGCTGTCATTGAGAGAAACTTACCCAAGAACTGCTCCTGAGGTTCCTGAGGCAGCTT
ACCACTTCTGCACCCTCGCCTCAGGGTGGTTGGCAAGCCTGGTGGTTTCTTCAGGATTGAACTA
CAGCAGCCTGGTGTCTGTCTGCTGAAAGGACTGCACTGTAACTGCTGGTTCGTGCCTGGTGTCT
GTCTGTCTAGAGGACTGGGCTGCAGCCGCTGAGTCGTATTTGGTGTTTGCTATGGGACTGAGCT
GCTGCCCAAGAAGATCCAGCTCGCCCCCAAGAACTGTTGCTGAACAGAACCTATCCCAGCTTCC
CTACGCCAAGGCCCTCTACAGCTATGAGGGAAAAGAACCCGGTGACCTCAAGTTCAACAAAGGG
GACATCATCATTCTGAGACGCAAGGTTGATGAGAACTGGTACCATGGGGAGCTTCAGGGCACAC
ATGGCTTCCTCCCAGCCAGCTACATCCAGTGCATGAGGCCCTTGCCGCAGACTCTGCCCCAAGG
CAAAGCACTTTACGATTTTGAGATGAAAGACAGAGACCAAGACAAAGATTGTCTGACCTTCACT
AAGGATGAAGTTTTAACTGTGATCCGGAGAGTGGATGATAATTGGGCCGAAGGCATGCTGGGAG
ACAAGATTGGCATCTTCCCTCTCCTGTACGTGGAGCTCAACGACTCCGCCAAACAACTCATTGA
GATGGACAAGCTGTGCCCAGCTGCCACCACTGCATACAACTATGATGCCCTCTTGTCCTCTGAC
CCCAGCACAGTCGCCAATGTGGCCCCAGGTCCCACCCTAAGTAGCTCAGGGGCAGTCAGTGCCT
TTCAACGACGTGTGGACAGCAAGAAGAATGCCAAGAAGCGCCACTCCTTCACTGCGCTCAGTGT
GACTCACAAATCCTCACAGGCCTCCAGTCACAGGCACTCCATGGAAATTAGTGCCCCGGTGCTG
ATCAGCTCCAGCGACCCACGTGCTGCAGCTAGGATTGGGGAGCTTGCCCATCTGTCCTGCGCTG
TACCCACCCAGGACTCCTCTTCAGCTGGACCTGTCCCCACAGCCATCCCTCGAGCTGCCGCAGT
GGCTGGAGAACAGGGCATGTCTCCCAAAGTCCAGCTGCCCCTCAACATGTACCTGGCTCTCTAT
GCATACAAGCCCCAGAAGAATGATGAGCTGGAGCTTCGCAAGGGTGAGATGTACCGTGTACTCG
AGAAGTGCCAGGATGGCTGGTTCAAGGGGGCGTCATTGAAAACCGGGATCTCGGGGGTGTTCCC
CGGCAACTATGTGACACCTGTCTCCAGGGTTCCTGGAGGAGCTGGGTCACCCTGGAATAATGTG
CTTGGAGGGTCTCCATTGGCCAAGGGAATGGCCACCATTATGCACCCTGGAGGTGGAAGTCTGA
GCAGCCCAGCCACTGCCACCAGGTCTGCTCTGCCTCTCACCACACTGCAGGACCATATGCAGCA
CCCAGCCACCTCCCTACCAACAGGCAGCTGCCTTCGACACACAGCTCAACCAGCAGCCAGCCAA
GCTGGGGGCACCACCATCCCAACAGCTACCCATCCCTCGGCCCAGGCCCTGGACCGTCCAACTG
CCACCGTGTCACCCCTGCGCACTCAGACTTCTCCATCCCGCCTACCCAGCACCAGCCTCCGACC
CCGCTCCGTGGTGTCCCCACAGCACAGCCAGCAGCCCCCGACACAGATGTGTCCCCGGCCAGCC
ATCCCTTTCACATCAGCAGCCTCCGCCATCACACCCCCCAACGTCAGTGCCGCCAACCTCAGTG
GGGAGGTTGGAGGGACACCCACCAGCGGCCTGTCCACACCCAGCCCCATCAACGCAGGGTACAA
ACCAGATGACAAGAAAAACGAAAAGAAGGAGAAGAAGAGCGGACTGTTGAAGCTGCTGGCTGGG
GCCTCCACCAAGAAAAAGGCGCGCTCCCCGCCATCTGTATCTCCGACCCACGACCCCCAGTCGG
CCATGGATTCCTCGCTGCAGGGTGCCGTGGGCCCCGAAGTGTCCCCATTGACCATCCACGGCAG
GGCAGGCTCCTGCCCCGTAGAGAGTGAGATGCAGGGCGCCATTGGGCTGGAGCCGCTGCACAGA
AAAGCAGGCTCCTTAGATCTGAATTTCTCTTTGTCCCCCTCCCGGCAAGCAACTCTGTCCACGG
CTTCCATTCGCCCTGAACCTAAGCCACTGCCCAGAGAGAGGTACCGTGTGGTGGTCTCCTACCC
TCCACAGAGTGAAGCAGAGATCGAGCTAAAGGAAGGTGATATTGTCTTCGTGCACAGGAAGCAT
GAAGATGGCTGGTTCAAGGGGACTCTGCAGAGGAATGGCCGCACAGGTCTCTTCCCAGGCAGCT
TTGTGGAGAGCTTCTGAGGGCCATTGCTCCTGGCCAGCTTCTGCTGTCTGGGGTAGAGTGCCCA
AGAAGACACTATGTGAACAGAGGACACCTTCTCACCTAGGTCTGAGGTTCTTTCTGAGGTTCTT
TCTAAAGCACCGACCAGGAACAAGCAGACTGGGGCGATGACTCTCCCATGAAGTCCTTACTGCA
AGCACACATGGGCAGTGGCCTGTTTGTGAAGGAAGGCCGTACCCTGTGATGGATGGAAGCACAT
GTGGGTGTGAGAGAGAGAGAGCAGTAGCACAGAAAACGTTACCCATGGAGACAAACACACTACC
ACGCCACCCGGCGGCTACAGCATTGTTAGCTGTCTGTAAGGTTGGGAGCCTGGGAGGGTATAGA
GTGGGGCCACATGCTAGGGCTGACAGCAAGCTTCTTCCCTGCCTTCCCGGGGTCCTCTATATAC
CTCTGTCACCTGACATTGAGCCCCACAGCCAGGGCACTCATGGTTCAGGAGCCTCAGAGAAGGG
CTGTGAGTCTCCCAAGGTGTCCAGTGGGGTCTTGTGGGGCACAGGAGCAGAATCCTCAGGCTTT
GTCTCCCACCAGGACAATGAGCAGCACCGCCTGGTTCCACCGCCGCTGTCGTCCCATTGCTTCC
TTCTTATGGCACACCTTTTTAATGTACGACTCTGAGACTTTATATATTTCTAATAGGTCAGACG
CTGCATATTTTTCATACACCTGGTGCTGATTTTTTGTAAAACTAGAAACCAACTTGGGTAAGCT
TCAAGGGGGAAAAAAAGGGAGGTAACATCAAAAGAAAGTTTTATATATTTCCCAAATGAAGTTT
GGAGCATATTGAGGAATTCCTATCTGTAATGTCAAAATGCTGGCTGGTGCCCCACGAGGCGAGG
GGGAGGCCTGCCAAGAGGGGCACATGGAGTTGGAGAGTGCCTTTCCTGGCTGTTGGAAACAGGC
TAAACCATAAGCTCCATCTTGGTAGGAGTAATTATGACTAAAAAGTGGAAACCTATTAAGGAAT
GGATACATGGATACTGCCTTTTTGTGTGGCAGAAAGCGCGCGCGCGCGCACACACACACACACA
CACACACACACACACACACACACACACACGCAGGCACGCGCATACACTGACCCCAGAAGCTTCC
TTTGATTGCTTTAGAGAGAATGACTAAAAATAACATTCTTAAAGGGCGTCTTGCTGCCAAAATG
CAGCTCATACAACAGCTCAAATCCACTATCTTGCAAAGGTTTTTTTCTCCTTTTCAAAAGTAAA
TAACTTGCCCTATGCGGCCAGGCAAACTCCATCTGCTAGAGACCAAAGGTACAGCGACAGGCAC
GAGCCTGATGCTTACTTTAGACTTACAGGCCCGGAGACGCTGGAAAGGAAGGGGCTTGGTCTGC
TCTGAGGCCTCCCTGTAAGGCCACTGTCACAGCAGTGTGCTTCTCGGGAGGCTGGCCTGGTGTT
ACTGTCACACCTTAGGAACACATTCTTGTTTTTCAAAAATATCCCGAAAATAGCAATTTGTGAG
CCTGTGTGTACATTTTTATAAACTCACACAGCCCTGTGTATAGCCTTTGGTAGCAGAGGGCATT
ACTGCTTTCCATAATAAAATTAAGACCATGTATCCTCAACGTTCCTATTTGGGGATATGACCAG
CTAGTTGTGACTGCCGGGTGGCTACCACATGGAAGCCAGCACACCCAGAGACAGTCTCACACCC
CCCCAGGTGACAACACACTTACTGGACATAAAAAACTGTTCTGAGCCAGCTAGAAACTCTAGGT
CAAGCATAAGGATCCCTGTGTGCAGGCTCAATGACAGCCACAGTATCTACTCAGTGTCACCGAT
AAACTACTTGCCCATCCATGAACAAAAGATCTAGGTGTGGTTCAACCCTTGGTGTCACCGTGGA
GATACACAGATCTACACCCTGGGGGAGACATGTTCTCAGTGGAACCAGAGCTAACTCCAGATTC
CAGACAATAAGAACAAGGCCTTTTCCTCCTAAACAAGGTCAACTGAGCCCACAGAACAGACTTG
ACCTGAAGCTGTCCTCCACGAAGCACCGGCTGCTTCATGCAGAGGAAGGAGCAGCTTCATAGAA
AGCTAAGGGAAGTATCAAAGAATCTTTGGGAAACATCAGCTGGATCCTCTCGCAGCCAGGTTTA
CACTGGGTCCACCCTGGGGAGAGAAGCAGGGCCCTGGGGCTCATCCTCAGCTGGGCCTCCTGAG
ATACACAATGAGCCCAATGGTCTGAGCATTTTGAATACTCAAGCCCATTAGCCTTCAAAATCCT
GTTTTCCACAGTCAATGGCAGAAAAGAGGTTCCTTTCCTAAGGTCATCTTCCCTTGAGGACACG
TCTTGGCTACCAAACTGAAGCCAGCACCTCATCTAGAACCTTCACATCCCGTCCCTGCCAGCAG
CATGTGCCCTTACTCAGACACTCGGATTTGGTGGCCACGTGGGTTTCATTCAGTAGTTCTCAGC
CCTTCGAATAGAGGGTCAGCAAGGAGACAGGACAGTTTAGCCCCCAGAGGACTGATGGAACACG
AGAGACAAGAGGAGGCATAAATACAAGGCGGGGCACCCCAAAACCAGCCCAGTAGACATGGAAA
CCTTTGTACTTTGCACAACACACACCGAGACACATGCACACATGTGCTCCCAACCCCACATATG
TTTTTATTATACACCAATGTCAGTGTGTGATTTTAGAGGAATTGACATAGTGGCAAAAGCTGAT
GCCTGTGTTTGAGTCTTTAAATAAAACTGAACATGGAGA

hide sequence

RefSeq Acc Id:

XM_039099198 ⟹ XP_038955126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,306,937 - 27,642,315 (+)	NCBI
mRatBN7.2	20	26,765,278 - 27,099,261 (+)	NCBI

RefSeq Acc Id:

XM_039099199 ⟹ XP_038955127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,308,156 - 27,589,693 (+)	NCBI
mRatBN7.2	20	26,765,278 - 27,046,635 (+)	NCBI

RefSeq Acc Id:

XM_039099200 ⟹ XP_038955128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,568,513 - 27,642,315 (+)	NCBI
mRatBN7.2	20	27,023,945 - 27,099,261 (+)	NCBI

RefSeq Acc Id:

XM_039099201 ⟹ XP_038955129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,568,518 - 27,642,315 (+)	NCBI
mRatBN7.2	20	27,027,159 - 27,099,261 (+)	NCBI

RefSeq Acc Id:

XM_039099202 ⟹ XP_038955130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,568,518 - 27,642,315 (+)	NCBI
mRatBN7.2	20	27,026,372 - 27,099,261 (+)	NCBI

RefSeq Acc Id:

XM_063279663 ⟹ XP_063135733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,306,937 - 27,601,978 (+)	NCBI

RefSeq Acc Id:

XR_010061102

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,308,156 - 27,589,692 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_017457292	(Get FASTA)	NCBI Sequence Viewer
	XP_017457293	(Get FASTA)	NCBI Sequence Viewer
	XP_038955126	(Get FASTA)	NCBI Sequence Viewer
	XP_038955127	(Get FASTA)	NCBI Sequence Viewer
	XP_038955128	(Get FASTA)	NCBI Sequence Viewer
	XP_038955129	(Get FASTA)	NCBI Sequence Viewer
	XP_038955130	(Get FASTA)	NCBI Sequence Viewer
	XP_063135733	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93080	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064987
	ENSRNOP00000064987.3

RefSeq Acc Id:	XP_017457292 ⟸ XM_017601803
- Peptide Label:	isoform X1
- UniProtKB:	M0R6D9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLGASWLCASKAAATAAPGEGDDRQGEQQRGDQARTEEDMDESSLLDLLECSVCLERLDTTAK VLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGVDELPANILLVRLLDGIRQRPRTGASPGS SPPARPGPGTFPALAGGAGGATGSPPRSPVFLSAAAGSSTSSSLCDAATNRSVPVAKNLSQLPY AKALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELQGTHGFLPASYIQCMRPLPQTLPQGK ALYDFEMKDRDQDKDCLTFTKDEVLTVIRRVDDNWAEGMLGDKIGIFPLLYVELNDSAKQLIEM DKLCPAATTAYNYDALLSSDPSTVANVAPGPTLSSSGAVSAFQRRVDSKKNAKKRHSFTALSVT HKSSQASSHRHSMEISAPVLISSSDPRAAARIGELAHLSCAVPTQDSSSAGPVPTAIPRAAAVA GEQGMSPKVQLPLNMYLALYAYKPQKNDELELRKGEMYRVLEKCQDGWFKGASLKTGISGVFPG NYVTPVSRVPGGAGSPWNNVLGGSPLAKGMATIMHPGGGSLSSPATATRSALPLTTLQDHMQHP ATSLPTGSCLRHTAQPAASQAGGTTIPTATHPSAQALDRPTATVSPLRTQTSPSRLPSTSLRPR SVVSPQHSQQPPTQMCPRPAIPFTSAASAITPPNVSAANLSGEVGGTPTSGLSTPSPINAGYKP DDKKNEKKEKKSGLLKLLAGASTKKKARSPPSVSPTHDPQSAMDSSLQGAVGPEVSPLTIHGRA GSCPVESEMQGAIGLEPLHRKAGSLDLNFSLSPSRQATLSTASIRPEPKPLPRERYRVVVSYPP QSEAEIELKEGDIVFVHRKHEDGWFKGTLQRNGRTGLFPGSFVESF hide sequence

RefSeq Acc Id:

XP_017457293 ⟸ XM_017601804

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGLSCCPRRSSSPPRTVAEQNLSQLPYAKALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGE
LQGTHGFLPASYIQCMRPLPQTLPQGKALYDFEMKDRDQDKDCLTFTKDEVLTVIRRVDDNWAE
GMLGDKIGIFPLLYVELNDSAKQLIEMDKLCPAATTAYNYDALLSSDPSTVANVAPGPTLSSSG
AVSAFQRRVDSKKNAKKRHSFTALSVTHKSSQASSHRHSMEISAPVLISSSDPRAAARIGELAH
LSCAVPTQDSSSAGPVPTAIPRAAAVAGEQGMSPKVQLPLNMYLALYAYKPQKNDELELRKGEM
YRVLEKCQDGWFKGASLKTGISGVFPGNYVTPVSRVPGGAGSPWNNVLGGSPLAKGMATIMHPG
GGSLSSPATATRSALPLTTLQDHMQHPATSLPTGSCLRHTAQPAASQAGGTTIPTATHPSAQAL
DRPTATVSPLRTQTSPSRLPSTSLRPRSVVSPQHSQQPPTQMCPRPAIPFTSAASAITPPNVSA
ANLSGEVGGTPTSGLSTPSPINAGYKPDDKKNEKKEKKSGLLKLLAGASTKKKARSPPSVSPTH
DPQSAMDSSLQGAVGPEVSPLTIHGRAGSCPVESEMQGAIGLEPLHRKAGSLDLNFSLSPSRQA
TLSTASIRPEPKPLPRERYRVVVSYPPQSEAEIELKEGDIVFVHRKHEDGWFKGTLQRNGRTGL
FPGSFVESF

hide sequence

Ensembl Acc Id:

ENSRNOP00000064987 ⟸ ENSRNOT00000072485

RefSeq Acc Id:	XP_038955126 ⟸ XM_039099198
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038955127 ⟸ XM_039099199
- Peptide Label:	isoform X5
- UniProtKB:	A6K3U1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955128 ⟸ XM_039099200
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038955130 ⟸ XM_039099202
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038955129 ⟸ XM_039099201
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063135733 ⟸ XM_063279663
- Peptide Label:	isoform X4

Protein Domains

RING-type SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R6D9-F1-model_v2	AlphaFold	M0R6D9	1-694	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589772	AgrOrtholog
BioCyc Gene	G2FUF-3780	BioCyc
Ensembl Genes	ENSRNOG00000046791	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000072485	ENTREZGENE
	ENSRNOT00000072485.5	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	Endophilin_SH3RF	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	SH3RF1/SH3RF3_SH3_4	UniProtKB/TrEMBL
	SH3RF3_RING-HC_Zfn	UniProtKB/TrEMBL
	Znf-RING_euk	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:294557	UniProtKB/TrEMBL
NCBI Gene	294557	ENTREZGENE
PANTHER	CAP, ISOFORM AC	UniProtKB/TrEMBL
	E3 UBIQUITIN-PROTEIN LIGASE SH3RF3	UniProtKB/TrEMBL
	SH3 DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	SH3_1	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
	zf-RING_UBOX	UniProtKB/TrEMBL
PhenoGen	Sh3rf3	PhenoGen
PRINTS	P67PHOX	UniProtKB/TrEMBL
	SH3DOMAIN	UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000046791	RatGTEx
SMART	RING	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
UniProt	A6K3U1	ENTREZGENE, UniProtKB/TrEMBL
	M0R6D9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-09-20	Sh3rf3	SH3 domain containing ring finger 3	Sh3md4	SH3 multiple domains 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Sh3md4	SH3 multiple domains 4	LOC294557	similar to SH3 domain containing ring finger 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC294557	similar to SH3 domain containing ring finger 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD