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Gene: Cbln4 (cerebellin 4 precursor) Rattus norvegicus

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Symbol:

Cbln4

Name:

cerebellin 4 precursor

RGD ID:

1589642

Description:

Predicted to be involved in inhibitory synapse assembly and trans-synaptic signaling, modulating synaptic transmission. Predicted to act upstream of or within protein secretion. Predicted to be located in GABA-ergic synapse and extracellular space. Predicted to be active in glutamatergic synapse and synaptic cleft. Orthologous to human CBLN4 (cerebellin 4 precursor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; bis(2-ethylhexyl) phthalate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cerebellin 4; cerebellin 4 precursor protein; cerebellin-4; LOC499947; similar to cerebellin 4 precursor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CBLN4 (cerebellin 4 precursor)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cbln4 (cerebellin 4 precursor protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cbln4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CBLN4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CBLN4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CBLN4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CBLN4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cbln4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cbln4 (cerebellin 4 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	YIPF5 (Yip1 domain family member 5)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Cbln4 (cerebellin 4 precursor protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CBLN4 (cerebellin 4 precursor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cbln4 (cerebellin 4 precursor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cbln4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	181,218,046 - 181,225,600 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	181,218,046 - 181,225,600 (-)	Ensembl				GRCr8
mRatBN7.2	3	160,799,587 - 160,807,143 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	160,799,587 - 160,807,143 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	164,611,908 - 164,619,474 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	173,110,859 - 173,118,425 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	170,852,717 - 170,860,285 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	170,033,166 - 170,040,953 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	170,033,166 - 170,040,953 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	176,112,391 - 176,120,178 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	162,913,936 - 162,921,642 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	160,005,725 - 160,013,278 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

Cuprizon (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dimethylarsinic acid (EXP)

ethanol (ISO)

folic acid (ISO)

glycidol (EXP)

N,N-diethyl-m-toluamide (EXP)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inhibitory synapse assembly (IEA,ISO)

maintenance of synapse structure (IBA)

protein secretion (ISO)

trans-synaptic signaling, modulating synaptic transmission (IBA,IEA,ISO)

Cellular Component

extracellular region (IEA,ISO)

extracellular space (IBA,IEA,ISO)

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IEA,ISO)

synapse (IBA)

synaptic cleft (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17030622	PMID:17331201	PMID:25534236	PMID:29782851	PMID:30679375

Genomics

Comparative Map Data

Cbln4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	181,218,046 - 181,225,600 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	181,218,046 - 181,225,600 (-)	Ensembl				GRCr8
mRatBN7.2	3	160,799,587 - 160,807,143 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	160,799,587 - 160,807,143 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	164,611,908 - 164,619,474 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	173,110,859 - 173,118,425 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	170,852,717 - 170,860,285 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	170,033,166 - 170,040,953 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	170,033,166 - 170,040,953 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	176,112,391 - 176,120,178 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	162,913,936 - 162,921,642 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	160,005,725 - 160,013,278 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

CBLN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	55,997,357 - 56,005,519 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	55,997,357 - 56,005,519 (-)	Ensembl			hg38	GRCh38
GRCh37	20	54,572,413 - 54,580,575 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	54,005,903 - 54,013,419 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	54,005,902 - 54,013,419	NCBI
Celera	20	51,311,804 - 51,319,320 (-)	NCBI		Celera
Cytogenetic Map	20	q13.2	NCBI
HuRef	20	51,353,635 - 51,361,750 (-)	NCBI		HuRef
CHM1_1	20	54,473,476 - 54,481,591 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	57,772,334 - 57,780,496 (-)	NCBI		T2T-CHM13v2.0

Cbln4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	171,878,256 - 171,885,386 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	171,878,153 - 171,885,386 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	172,036,336 - 172,043,466 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	172,036,233 - 172,043,466 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	171,861,836 - 171,868,966 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	171,727,541 - 171,734,671 (-)	NCBI		MGSCv36	mm8
Celera	2	177,986,635 - 177,993,764 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	94.74	NCBI

Cbln4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	3,209,006 - 3,216,914 (+)	Ensembl
ChiLan1.0	NW_004955445	3,209,006 - 3,216,679 (+)	NCBI	ChiLan1.0	ChiLan1.0

CBLN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	61,738,300 - 61,747,452 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	61,731,418 - 61,740,574 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	52,330,743 - 52,339,896 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	53,549,273 - 53,557,294 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	53,548,083 - 53,557,294 (-)	Ensembl			panPan2	panpan1.1

CBLN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	41,314,211 - 41,321,624 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	41,171,746 - 41,320,612 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	40,508,674 - 40,569,959 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	41,971,259 - 42,033,235 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	41,971,214 - 42,032,599 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	41,211,732 - 41,272,923 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	41,348,777 - 41,410,430 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	42,007,876 - 42,069,825 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CBLN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	56,674,872 - 56,683,261 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	56,674,872 - 56,683,261 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	63,734,700 - 63,743,081 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CBLN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	8,111,028 - 8,120,536 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	8,112,998 - 8,119,620 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	56,198,660 - 56,207,638 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cbln4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	538,490 - 546,586 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	540,084 - 555,128 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cbln4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	145,958,620 - 145,965,939 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	740
Count of miRNA genes:	271
Interacting mature miRNAs:	343
Transcripts:	ENSRNOT00000005866
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

BE108611

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	181,226,452 - 181,226,656 (+)	Marker Load Pipeline
mRatBN7.2	3	160,807,995 - 160,808,199 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	170,041,806 - 170,042,009	NCBI	Rnor6.0
Rnor_5.0	3	176,121,031 - 176,121,234	UniSTS	Rnor5.0
RGSC_v3.4	3	162,922,495 - 162,922,698	UniSTS	RGSC3.4
Celera	3	160,014,131 - 160,014,334	UniSTS
RH 3.4 Map	3	1493.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
6	5	107	12	11	5	1	5	1	36	6	107	19	37	6	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005866 ⟹ ENSRNOP00000005866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	181,218,046 - 181,225,600 (-)	Ensembl
mRatBN7.2 Ensembl	3	160,799,587 - 160,807,143 (-)	Ensembl
Rnor_6.0 Ensembl	3	170,033,166 - 170,040,953 (-)	Ensembl

RefSeq Acc Id:

NM_001109210 ⟹ NP_001102680

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,218,046 - 181,225,600 (-)	NCBI
mRatBN7.2	3	160,799,587 - 160,807,143 (-)	NCBI
Rnor_6.0	3	170,033,166 - 170,040,953 (-)	NCBI
Rnor_5.0	3	176,112,391 - 176,120,178 (-)	NCBI
RGSC_v3.4	3	162,913,936 - 162,921,642 (-)	RGD
Celera	3	160,005,725 - 160,013,278 (-)	RGD

Sequence:

show sequence

ACAAACCGCGCAGATCCGCCGCGGTCCTTTCATCTCCACATCTGAGCTGGCAGCGCCACGTTCG
GTTCAGAGAGTCTTGCGCAGGGCAGGGTGAGGGGACCCACAACTCCCTCTGCGGGTCCAGGTGG
AGCTGGCGGCAAGCAGCCGTGAAGCCGTGGCAGGCGCGTTCCGGTGGGCACCATCCTCTGCGCA
CACACAGTGAGATTTCGGGGGACCAAGTGGCCTCGGACCTGGCAGCAGGCAGTGCCGTGTGTCC
TTCTCGGTCCGTGTGCGTTCAACGTCACACAGGCGCTGCTCCGCTGGGGTCACCGGACGCCTTT
TCTGCTTTCCGGGGATCCGCGGGATGGTCGAGCGAGCCAAAGCCATCTGCAGGCAGCACTCCTA
TAAATAGCGGGCGGGTGCCCTCTCGGCGCTCTCCCTCCCGGCTGCACTGCGCGCTGAGACACAA
AGTTGTGCACAGGGACGAGGGAACCCAGGGTAGCCGGCGCCCTGAACCTTAGAACTGCTTTTGG
CGACCGGCATTCAGCTGAGCCGCCTACCTGCGTCGGAGTGACACCGGGCTTTGGGGGAATTTTT
GGCTATTTTTGGGGGAGTCGCTAGCATCCTGGACATGGACACAACCTGGCGTTCTTCTCATCCC
CGGAAACACCTCCTGCCTCTGTAATTTGTTCCTGCGCCAACCAGAGTCCCTCAGACCGGACCGA
CACCCGCACTGCTCCTCACTAGCCACCCTAGCTAGCGTTTACTTGCTGAGTCCCCACTGTGTCT
TCAGCTCCGTGCTTCTCTAAGAGTGCTTGGGGTTTGGGGTGAGGATTTATTTTGTTCTTTTGCG
GTGTGACCGAGAGGGCCTCGAGACTTTTTAGATGTCAAGGGACAAGTGTGGGTGCAGTGGCCCC
AGGCAAAACTGATTTGGGGGGTGGAGGAGTTAGGGTAGGAGTTCTGCATGAGCTCCTTAAAGGA
CAAAGGTAACAGAGCCAGCCAGCCAGCTCGAAGGGAGACTTCAGCCCAGAGAATTGGTGAAAGT
GCGCGCGCCGCTGCTGCCGCCGCCGCCGCTGTTCCTGCAGCGCAGTCGATCTAGCCACTAGCCT
CTTTCCCAGCTCCCGGATCCCGGGGTAGCAGGCGCCAGCCGGGAGCAGAAGCGCCAGGCTGCCG
CTTGCGCACGAGGCTCACCATGGGCTCCGCGCGCCGGGCGCTGTCCGTGGTACCAGCTGTTCTG
CTGGTTCTCGTGCTGCCTGTCTGGGCACAGAATGACACGGAACCGATCGTTCTGGAGGGCAAGT
GTCTGGTGGTGTGCGACTCGAACCCAGCCACAGACTCCAAGGGATCATCTTCCTCCCCTCTGGG
GATATCGGTCCGGGCAGCGAACTCCAAGGTGGCCTTTTCAGCGGTTCGGAGCACCAACCACGAG
CCATCTGAGATGAGCAACAAGACTCGCATCATTTACTTTGATCAGATCCTGGTTAACGTGGGTA
ATTTTTTCACACTGGAATCCGTCTTTGTGGCACCGAGGAAAGGGATCTACAGTTTCAGTTTTCA
CGTCATTAAAGTCTACCAGAGCCAAACCATCCAGGTTAACTTGATGTTAAATGGAAAGCCAGTC
ATCTCTGCATTTGCCGGCGATAAGGACGTGACCCGCGAAGCCGCCACGAACGGAGTGCTACTGT
ACCTGGACAAAGAAGATAAGGTCTACCTGAAACTGGAGAAAGGTAACTTGCTTGGCGGCTGGCA
GTATTCCACGTTTTCTGGCTTTCTGGTGTTTCCGCTATAGAACCTGACTTCTCCGTGTCGACCG
AGTGTGAGGGTGCCCACCCCCGGGTTGTTGGAAGAGCACTCTCGGATTGATGTCTCTTACTGTT
TTGTTCGTGGGTGACTATGGATTCTCTTTGAGAATTCTAGACCTGTCTGGACAAACACAAAGTT
TCGCAGATCATTTTCGTGTGTGTACCAGTTTCCTCTCATGTGGACCGGGACTCCAAAGCTGAAA
AATCCCTAATTGCTTTCGTGTTAACTGTCAGAAGCCGCCTCAAGGTTTGTTCTGTTAGTTTCTT
GCCATTGCAGCATTGGCTGCAGAGGTGGGGGGAGGTTTTATTTCTTTGTTTTTGAAAGACTGGC
TAGTGGGTCTGAAGGTTAGAAAAGTTGTAAGTTCTGACTTCAGCGGTCATAGTGGAACTGCCAA
AGACATGTGGACATGTGTGGATACATTGATTAGACTTTTTTTTTTTTAAAAAAACTAATTACTT
TTGAATTTGTTTTGTTCTCTTAAGGTAACTGGGATTGTATTTTAGTGACTGGCATTGTGTTCAC
TCTACCCATAAGGTGACAAATGTCTTGCCTCGAAACGTCCCTTAACTCTCAGCTCACCCCCACG
ACCTCCCTCCCGCCCCCTAAAACGAATGCTCCATAGTTGTATTTTAATTATATATGTGAAAGAG
TCATATTTTCCAAATTATATTTTCTAATAGGAAAAACAGATCGTAAATCTGACAAAGACAAAGT
TATTTACCCCAATTCCAATGCTCAGTCCCAAACCTTGGCAAAGTACCTCTCCTTGGTGGGACAT
TGTATACTCTATTGCTCAACTTTAATTAACGTGATTGATAATAACTACCTTATTAAACCCACCA
GGAATTATTTTCTCCTTCACCGTGACCACTTTATTAACTGGAGATGGTGTGCCCTTATTTTTAA
TTGTATCTATTTTTCAAATCTCCTGTTGTGTTTGAAATATCTTCTGGTTTTGCCTTAATTCCTT
AACTTGTATATATTTTTGTGTTCAGCTAACATTAAATCCAGATACTCCATAACTAAATTTAGTG
CAATATCTTATTTTGTCTTTTGTATAGATCATATGAATTCATAAAGTTATTTACGTCTCTGTTA
CAGAATAAAGATTATTATATGTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102680	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85155	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005866
	ENSRNOP00000005866.3

RefSeq Acc Id:	NP_001102680 ⟸ NM_001109210
- Peptide Label:	precursor
- UniProtKB:	D4ABJ2 (UniProtKB/TrEMBL), A6KKW1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSARRALSVVPAVLLVLVLPVWAQNDTEPIVLEGKCLVVCDSNPATDSKGSSSSPLGISVRAA NSKVAFSAVRSTNHEPSEMSNKTRIIYFDQILVNVGNFFTLESVFVAPRKGIYSFSFHVIKVYQ SQTIQVNLMLNGKPVISAFAGDKDVTREAATNGVLLYLDKEDKVYLKLEKGNLLGGWQYSTFSG FLVFPL hide sequence

Ensembl Acc Id:

ENSRNOP00000005866 ⟸ ENSRNOT00000005866

Protein Domains

C1q

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ABJ2-F1-model_v2	AlphaFold	D4ABJ2	1-198	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589642	AgrOrtholog
BioCyc Gene	G2FUF-46549	BioCyc
Ensembl Genes	ENSRNOG00000004372	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005866	ENTREZGENE
	ENSRNOT00000005866.6	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/TrEMBL
InterPro	C1q	UniProtKB/TrEMBL
	Cerebellin_Synaptic_Org	UniProtKB/TrEMBL
	Tumour_necrosis_fac-like	UniProtKB/TrEMBL
KEGG Report	rno:499947	UniProtKB/TrEMBL
NCBI Gene	499947	ENTREZGENE
PANTHER	CEREBELLIN-4	UniProtKB/TrEMBL
	CEREBELLIN-RELATED	UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/TrEMBL
PhenoGen	Cbln4	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004372	RatGTEx
SMART	C1Q	UniProtKB/TrEMBL
Superfamily-SCOP	TNF_like	UniProtKB/TrEMBL
UniProt	A6KKW1	ENTREZGENE, UniProtKB/TrEMBL
	D4ABJ2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-05-15	Cbln4	cerebellin 4 precursor	Cbln4	cerebellin 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Cbln4	cerebellin 4	LOC499947	similar to cerebellin 4 precursor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC499947	similar to cerebellin 4 precursor			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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