Vipas39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Vipas39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog) Rattus norvegicus
Analyze
Symbol: Vipas39
Name: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
RGD ID: 1589291
Description: Predicted to be involved in endosome to lysosome transport and intracellular protein transport. Predicted to act upstream of or within collagen fibril organization; collagen metabolic process; and post-translational protein modification. Predicted to be located in Golgi apparatus and endosome. Predicted to be part of vesicle tethering complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arthrogryposis, renal dysfunction, and cholestasis 2. Orthologous to human VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hSPE-39; hypothetical protein LOC681989; LOC681989; protein spe-39 homolog; similar to defective SPErmatogenesis family member (spe-39); Spe39; spermatogenesis-defective protein 39 homolog; Vipar; VPS33B-interacting protein; VPS33B-interacting protein in apical-basolateral polarity regulator; VPS33B-interacting protein in polarity and apical restriction
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,619,228 - 112,644,089 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6112,619,228 - 112,641,331 (-)EnsemblGRCr8
mRatBN7.26106,888,284 - 106,913,139 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,888,284 - 106,913,117 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6107,056,493 - 107,081,443 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,355,318 - 107,380,258 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,725,007 - 106,749,948 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,271,283 - 111,296,013 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,271,240 - 111,295,994 (-)Ensemblrn6Rnor6.0
Rnor_5.06120,553,710 - 120,578,008 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera6104,708,561 - 104,733,217 (-)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
cytoplasmic vesicle  (IEA)
early endosome  (IEA,ISO)
endosome  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
HOPS complex  (ISO)
late endosome  (IEA,ISO)
recycling endosome  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19109425   PMID:20190753   PMID:25783203   PMID:27435297  


Genomics

Comparative Map Data
Vipas39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,619,228 - 112,644,089 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6112,619,228 - 112,641,331 (-)EnsemblGRCr8
mRatBN7.26106,888,284 - 106,913,139 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,888,284 - 106,913,117 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6107,056,493 - 107,081,443 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,355,318 - 107,380,258 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,725,007 - 106,749,948 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,271,283 - 111,296,013 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,271,240 - 111,295,994 (-)Ensemblrn6Rnor6.0
Rnor_5.06120,553,710 - 120,578,008 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera6104,708,561 - 104,733,217 (-)NCBICelera
Cytogenetic Map6q31NCBI
VIPAS39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,426,675 - 77,457,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,426,675 - 77,457,952 (-)Ensemblhg38GRCh38
GRCh371477,893,018 - 77,923,944 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,962,771 - 76,993,657 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341476,962,770 - 76,993,657NCBI
Celera1457,931,580 - 57,962,552 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1458,058,939 - 58,089,945 (-)NCBIHuRef
CHM1_11477,832,467 - 77,863,429 (-)NCBICHM1_1
T2T-CHM13v2.01471,636,055 - 71,666,984 (-)NCBIT2T-CHM13v2.0
Vipas39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,285,647 - 87,313,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,285,642 - 87,313,030 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381287,238,875 - 87,266,378 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,238,868 - 87,266,256 (-)Ensemblmm10GRCm38
MGSCv371288,579,825 - 88,607,236 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361288,127,978 - 88,153,347 (-)NCBIMGSCv36mm8
Celera1288,703,594 - 88,731,006 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.44NCBI
Vipas39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,321,845 - 1,347,535 (-)Ensembl
ChiLan1.0NW_0049554381,320,862 - 1,351,344 (-)NCBIChiLan1.0ChiLan1.0
VIPAS39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,512,749 - 78,544,055 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,729,259 - 77,760,559 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,982,041 - 58,013,037 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,183,185 - 77,213,714 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,183,185 - 77,213,382 (-)EnsemblpanPan2panpan1.1
VIPAS39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,233,162 - 50,258,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,233,917 - 50,254,507 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha849,920,952 - 49,946,225 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0850,467,109 - 50,492,423 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,463,634 - 50,488,483 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,129,742 - 50,154,835 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,152,817 - 50,178,072 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,550,741 - 50,575,951 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vipas39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,791,443 - 25,821,636 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,247,296 - 6,277,506 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,247,329 - 6,277,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VIPAS39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,482,956 - 100,506,161 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17100,482,953 - 100,510,164 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,443,955 - 106,472,507 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VIPAS39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,688,278 - 54,719,054 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,688,230 - 54,719,042 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605342,879,093 - 42,910,068 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vipas39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,438,495 - 24,463,923 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473424,435,400 - 24,464,883 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Vipas39
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17101,339,638 - 101,363,124 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Vipas39
182 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:125
Interacting mature miRNAs:140
Transcripts:ENSRNOT00000073428
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
RH129935  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26106,888,300 - 106,888,506 (+)MAPPERmRatBN7.2
Rnor_6.06111,271,300 - 111,271,505NCBIRnor6.0
Rnor_5.06120,553,727 - 120,553,932UniSTSRnor5.0
Celera6104,708,578 - 104,708,783UniSTS
RH 3.4 Map6748.9UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000073428   ⟹   ENSRNOP00000066883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,619,228 - 112,641,331 (-)Ensembl
mRatBN7.2 Ensembl6106,888,284 - 106,910,387 (-)Ensembl
Rnor_6.0 Ensembl6111,271,283 - 111,295,917 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079373   ⟹   ENSRNOP00000073602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,619,228 - 112,641,331 (-)Ensembl
mRatBN7.2 Ensembl6106,888,321 - 106,913,117 (-)Ensembl
Rnor_6.0 Ensembl6111,271,240 - 111,295,994 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098233   ⟹   ENSRNOP00000084914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,620,827 - 112,641,331 (-)Ensembl
mRatBN7.2 Ensembl6106,889,883 - 106,910,387 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113112   ⟹   ENSRNOP00000090604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,620,827 - 112,641,331 (-)Ensembl
mRatBN7.2 Ensembl6106,889,883 - 106,910,387 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157937   ⟹   ENSRNOP00000101549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,619,228 - 112,641,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165699   ⟹   ENSRNOP00000098916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,619,228 - 112,641,331 (-)Ensembl
RefSeq Acc Id: NM_001101004   ⟹   NP_001094474
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,619,228 - 112,644,070 (-)NCBI
mRatBN7.26106,888,284 - 106,913,126 (-)NCBI
Rnor_6.06111,271,283 - 111,295,917 (-)NCBI
Rnor_5.06120,553,710 - 120,578,008 (-)NCBI
Celera6104,708,561 - 104,733,217 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399770   ⟹   NP_001386699
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,619,228 - 112,644,070 (-)NCBI
mRatBN7.26106,888,284 - 106,913,126 (-)NCBI
RefSeq Acc Id: NR_174351
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,619,228 - 112,644,070 (-)NCBI
mRatBN7.26106,888,284 - 106,913,126 (-)NCBI
RefSeq Acc Id: XM_063262473   ⟹   XP_063118543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,627,702 - 112,644,089 (-)NCBI
RefSeq Acc Id: NP_001094474   ⟸   NM_001101004
- Peptide Label: isoform 2
- UniProtKB: Q5PQN6 (UniProtKB/Swiss-Prot),   A6JE89 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073602   ⟸   ENSRNOT00000079373
Ensembl Acc Id: ENSRNOP00000066883   ⟸   ENSRNOT00000073428
Ensembl Acc Id: ENSRNOP00000090604   ⟸   ENSRNOT00000113112
Ensembl Acc Id: ENSRNOP00000084914   ⟸   ENSRNOT00000098233
RefSeq Acc Id: NP_001386699   ⟸   NM_001399770
- Peptide Label: isoform 1
- UniProtKB: A6JE90 (UniProtKB/TrEMBL),   A6JE89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118543   ⟸   XM_063262473
- Peptide Label: isoform X1
- UniProtKB: A6JE94 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101549   ⟸   ENSRNOT00000157937
Ensembl Acc Id: ENSRNOP00000098916   ⟸   ENSRNOT00000165699
Protein Domains
Vps16 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQN6-F1-model_v2 AlphaFold Q5PQN6 1-460 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694756
Promoter ID:EPDNEW_R5281
Type:initiation region
Name:Vipas39_1
Description:VPS33B interacting protein, apical-basolateral polarity regulator,spe-39 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06111,295,980 - 111,296,040EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589291 AgrOrtholog
BioCyc Gene G2FUF-36722 BioCyc
Ensembl Genes ENSRNOG00000049223 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000073428 ENTREZGENE
  ENSRNOT00000073428.3 UniProtKB/Swiss-Prot
  ENSRNOT00000079373 ENTREZGENE
IMAGE_CLONE IMAGE:7192222 IMAGE-MGC_LOAD
InterPro Spe-39 UniProtKB/Swiss-Prot
KEGG Report rno:681989 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94668 IMAGE-MGC_LOAD
NCBI Gene 681989 ENTREZGENE
PANTHER PTHR13364 UniProtKB/Swiss-Prot
  SPERMATOGENESIS-DEFECTIVE PROTEIN 39 HOMOLOG UniProtKB/Swiss-Prot
PhenoGen Vipas39 PhenoGen
RatGTEx ENSRNOG00000049223 RatGTEx
UniProt A0A0G2K5Y1_RAT UniProtKB/TrEMBL
  A0A8I6A249_RAT UniProtKB/TrEMBL
  A0A8I6ADV5_RAT UniProtKB/TrEMBL
  A0ABK0L8R8_RAT UniProtKB/TrEMBL
  A0ABK0LCJ5_RAT UniProtKB/TrEMBL
  A6JE89 ENTREZGENE, UniProtKB/TrEMBL
  A6JE90 ENTREZGENE, UniProtKB/TrEMBL
  A6JE94 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQN6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-13 Vipas39  VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog  LOC681989  similar to defective SPErmatogenesis family member (spe-39)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC681989  similar to defective SPErmatogenesis family member (spe-39)      Symbol and Name status set to provisional 70820 PROVISIONAL