Krt18l1 (keratin 18 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Krt18l1 (keratin 18 like 1) Rattus norvegicus
Analyze
Symbol: Krt18l1
Name: keratin 18 like 1
RGD ID: 1589269
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin, type I cytoskeletal 18-like; LOC683212; similar to keratin complex 1, acidic, gene 18
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8280,640,782 - 80,642,161 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7135,035,982 - 135,039,848 (+)EnsemblGRCr8
mRatBN7.2278,910,400 - 78,911,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,157,475 - 133,161,166 (+)EnsemblmRatBN7.2
Rnor_6.0280,878,263 - 80,879,814 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02100,545,139 - 100,546,687 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4280,043,187 - 80,044,575 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera274,544,771 - 74,546,129 (+)NCBICelera
Cytogenetic Map2q22NCBI
JBrowse:




References

Genomics

Variants

.
Variants in Krt18l1
26 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)261556902106556902Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)261051883104684275Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)261051541105724065Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)278269809104744824Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)278269809123269809Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)261051541105724065Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260861391105861391Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat

Markers in Region
RH131703  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0825,170,981 - 25,171,164NCBIRnor5.0
Rnor_5.02100,546,425 - 100,546,621NCBIRnor5.0
RGSC_v3.4823,625,335 - 23,625,517UniSTSRGSC3.4
RGSC_v3.4280,044,296 - 80,044,491UniSTSRGSC3.4
Celera824,075,285 - 24,075,467UniSTS
Celera274,545,867 - 74,546,062UniSTS
RH 3.4 Map71065.8UniSTS
Cytogenetic Map7q36UniSTS
Krt18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2278,910,620 - 78,911,453 (+)MAPPERmRatBN7.2
mRatBN7.2278,910,690 - 78,911,453 (+)MAPPERmRatBN7.2
Rnor_6.0280,878,793 - 80,879,555NCBIRnor6.0
Rnor_6.0280,878,570 - 80,879,555NCBIRnor6.0
Rnor_5.02100,545,637 - 100,546,399UniSTSRnor5.0
Rnor_5.02100,545,414 - 100,546,399UniSTSRnor5.0
RGSC_v3.4280,043,507 - 80,044,269UniSTSRGSC3.4
Celera274,545,078 - 74,545,840UniSTS
Cytogenetic Map7q36UniSTS
Krt18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2278,911,416 - 78,911,583 (+)MAPPERmRatBN7.2
mRatBN7.2822,497,552 - 22,497,716 (+)MAPPERmRatBN7.2
Rnor_6.0280,879,519 - 80,879,685NCBIRnor6.0
Rnor_6.0825,137,020 - 25,137,183NCBIRnor6.0
Rnor_5.0825,170,922 - 25,171,085UniSTSRnor5.0
Rnor_5.02100,546,363 - 100,546,529UniSTSRnor5.0
RGSC_v3.4823,625,275 - 23,625,438UniSTSRGSC3.4
RGSC_v3.4280,044,233 - 80,044,399UniSTSRGSC3.4
Celera824,075,225 - 24,075,388UniSTS
Celera274,545,804 - 74,545,970UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
7 2 10 3 30 13 8 2 10 32

Sequence


Ensembl Acc Id: ENSRNOT00000073951   ⟹   ENSRNOP00000067234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,157,475 - 133,161,166 (+)Ensembl
RefSeq Acc Id: XM_039103300   ⟹   XP_038959228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8280,640,782 - 80,642,161 (+)NCBI
mRatBN7.2278,910,400 - 78,911,742 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038959228 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038959228   ⟸   XM_039103300
Ensembl Acc Id: ENSRNOP00000067234   ⟸   ENSRNOT00000073951

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-53909 BioCyc
Ensembl Genes ENSRNOG00000047393 Ensembl
NCBI Gene 683212 ENTREZGENE
PhenoGen Krt18l1 PhenoGen
RatGTEx ENSRNOG00000047393 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Krt18l1  keratin 18 like 1  LOC683212  similar to keratin complex 1, acidic, gene 18  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC683212  similar to keratin complex 1, acidic, gene 18      Symbol and Name status set to provisional 70820 PROVISIONAL