Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Otogl | Rat | autosomal recessive nonsyndromic deafness 84B | | ISO | OTOGL (Homo sapiens) | 7240710 | | OMIM | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Otogl | Rat | autosomal recessive nonsyndromic deafness 84B | | ISO | OTOGL (Homo sapiens) | 7240710 | | OMIM | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
| 3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| Otogl (Rattus norvegicus - Norway rat) |
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| OTOGL (Homo sapiens - human) |
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| Otogl (Mus musculus - house mouse) |
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| Otogl (Chinchilla lanigera - long-tailed chinchilla) |
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| OTOGL (Pan paniscus - bonobo/pygmy chimpanzee) |
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| OTOGL (Canis lupus familiaris - dog) |
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| Otogl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| OTOGL (Sus scrofa - pig) |
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| OTOGL (Chlorocebus sabaeus - green monkey) |
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| Otogl (Heterocephalus glaber - naked mole-rat) |
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| Otogl (Rattus rattus - black rat) |
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Variants in Otogl
754 total Variants
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10 | 8 | 28 | 92 | 46 | 57 | 36 | 13 | 36 | 5 | 171 | 52 | 6 | 84 | 66 | 85 | 21 | 8 | 8 |
| RefSeq Transcripts | XM_017595357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_017603340 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080117 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039080123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000043774 ⟹ ENSRNOP00000041552 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000127616 ⟹ ENSRNOP00000106393 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000148933 ⟹ ENSRNOP00000100820 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000160113 ⟹ ENSRNOP00000103406 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080117 ⟹ XP_038936045 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080118 ⟹ XP_038936046 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080119 ⟹ XP_038936047 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080120 ⟹ XP_038936048 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080121 ⟹ XP_038936049 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080122 ⟹ XP_038936050 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039080123 ⟹ XP_038936051 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Protein RefSeqs | XP_038936045 | (Get FASTA) | NCBI Sequence Viewer |
| XP_038936046 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936047 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936048 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936049 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936050 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038936051 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000041552 | ||
| ENSRNOP00000041552.6 | |||
| ENSRNOP00000100820 | |||
| ENSRNOP00000100820.1 | |||
| ENSRNOP00000103406 | |||
| ENSRNOP00000103406.1 | |||
| ENSRNOP00000106393 | |||
| ENSRNOP00000106393.1 |
| Ensembl Acc Id: | ENSRNOP00000041552 ⟸ ENSRNOT00000043774 |
| RefSeq Acc Id: | XP_038936045 ⟸ XM_039080117 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038936050 ⟸ XM_039080122 |
| - Peptide Label: | isoform X6 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038936048 ⟸ XM_039080120 |
| - Peptide Label: | isoform X4 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038936046 ⟸ XM_039080118 |
| - Peptide Label: | isoform X2 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038936049 ⟸ XM_039080121 |
| - Peptide Label: | isoform X5 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038936047 ⟸ XM_039080119 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038936051 ⟸ XM_039080123 |
| - Peptide Label: | isoform X7 |
| - UniProtKB: | F1LY16 (UniProtKB/TrEMBL) |
| Ensembl Acc Id: | ENSRNOP00000106393 ⟸ ENSRNOT00000127616 |
| Ensembl Acc Id: | ENSRNOP00000100820 ⟸ ENSRNOT00000148933 |
| Ensembl Acc Id: | ENSRNOP00000103406 ⟸ ENSRNOT00000160113 |
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-F1LY16-F1-model_v2 | AlphaFold | F1LY16 | 1-2131 | view protein structure |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1589018 | AgrOrtholog |
| BioCyc Gene | G2FUF-34169 | BioCyc |
| Ensembl Genes | ENSRNOG00000030316 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000043774 | ENTREZGENE |
| ENSRNOT00000043774.7 | UniProtKB/TrEMBL | |
| ENSRNOT00000127616 | ENTREZGENE | |
| ENSRNOT00000127616.1 | UniProtKB/TrEMBL | |
| ENSRNOT00000148933 | ENTREZGENE | |
| ENSRNOT00000148933.1 | UniProtKB/TrEMBL | |
| ENSRNOT00000160113 | ENTREZGENE | |
| ENSRNOT00000160113.1 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 2.80.10.50 | UniProtKB/TrEMBL |
| Laminin | UniProtKB/TrEMBL | |
| InterPro | AbfB_ABD | UniProtKB/TrEMBL |
| AbfB_ABD_sf | UniProtKB/TrEMBL | |
| Cys_knot_C | UniProtKB/TrEMBL | |
| Mucin_vWF_Thrombospondin_sf | UniProtKB/TrEMBL | |
| Ser_inhib-like_sf | UniProtKB/TrEMBL | |
| TIL_dom | UniProtKB/TrEMBL | |
| Unchr_dom_Cys-rich | UniProtKB/TrEMBL | |
| VWF_dom | UniProtKB/TrEMBL | |
| VWF_type-D | UniProtKB/TrEMBL | |
| NCBI Gene | 685868 | ENTREZGENE |
| PANTHER | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED | UniProtKB/TrEMBL |
| HEMOLECTIN, ISOFORM A | UniProtKB/TrEMBL | |
| Pfam | AbfB | UniProtKB/TrEMBL |
| PF08742 | UniProtKB/TrEMBL | |
| TIL | UniProtKB/TrEMBL | |
| VWD | UniProtKB/TrEMBL | |
| PhenoGen | Otogl | PhenoGen |
| PROSITE | CTCK_2 | UniProtKB/TrEMBL |
| VWFD | UniProtKB/TrEMBL | |
| RatGTEx | ENSRNOG00000030316 | RatGTEx |
| SMART | SM00041 | UniProtKB/TrEMBL |
| SM00832 | UniProtKB/TrEMBL | |
| VWC_out | UniProtKB/TrEMBL | |
| VWD | UniProtKB/TrEMBL | |
| Superfamily-SCOP | SSF110221 | UniProtKB/TrEMBL |
| SSF57567 | UniProtKB/TrEMBL | |
| UniProt | A0ABK0LBY9_RAT | UniProtKB/TrEMBL |
| A0ABK0LFH4_RAT | UniProtKB/TrEMBL | |
| A0ABK0LNF1_RAT | UniProtKB/TrEMBL | |
| F1LY16 | ENTREZGENE, UniProtKB/TrEMBL |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2021-03-09 | Otogl | otogelin-like | LOC102549995 | uncharacterized LOC102549995 | Data merged from RGD:7678095 | 737654 | PROVISIONAL |
| 2015-07-29 | Otogl | otogelin-like | LOC685850 | similar to otogelin | Data merged from RGD:1589036 | 737654 | PROVISIONAL |
| 2013-12-18 | LOC102549995 | uncharacterized LOC102549995 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2013-03-05 | Otogl | otogelin-like, pseudogene 1 | Otogl-ps1 | otogelin-like, pseudogene 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2013-03-05 | Otogl | otogelin-like | Otogl | otogelin-like, pseudogene 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2012-02-24 | Otogl-ps1 | otogelin-like, pseudogene 1 | Otogl | otogelin-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2011-08-02 | Otogl | otogelin-like | LOC685868 | similar to otogelin | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-11-19 | LOC685850 | similar to otogelin | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2006-11-19 | LOC685868 | similar to otogelin | Symbol and Name status set to provisional | 70820 | PROVISIONAL |