Rps2-ps42 (ribosomal protein S2, pseudogene 42) - Rat Genome Database

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Gene: Rps2-ps42 (ribosomal protein S2, pseudogene 42) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps2-ps42
Name: ribosomal protein S2, pseudogene 42
RGD ID: 1588815
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of cytosolic small ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S2 pseudogene; 40S ribosomal protein S2-like; LOC103690283; LOC688473; ribosomal protein S2 like 2; Rps2l2; similar to 40S ribosomal protein S2; small ribosomal subunit protein uS5-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8848,935,904 - 48,936,601 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl968,193,757 - 68,194,632 (+)EnsemblGRCr8
mRatBN7.2840,038,718 - 40,039,422 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl960,699,846 - 60,700,505 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1183,041,308 - 183,041,973 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl840,038,718 - 40,039,383 (-)EnsemblmRatBN7.2
Rnor_6.0843,479,932 - 43,480,636 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0843,466,448 - 43,469,244 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4842,616,204 - 42,617,092 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera839,665,149 - 39,665,853 (-)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IBA,IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rps2-ps42
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625851589833Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83910625849610361Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
sensory system
visual system
7 4 6 15 6 6 2 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000035386   ⟹   ENSRNOP00000036343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1183,041,308 - 183,041,973 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000058491   ⟹   ENSRNOP00000055288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,193,757 - 68,194,632 (+)Ensembl
mRatBN7.2 Ensembl960,699,846 - 60,700,505 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000060074   ⟹   ENSRNOP00000056823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl840,038,718 - 40,039,383 (-)Ensembl
RefSeq Acc Id: XM_039082870   ⟹   XP_038938798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8848,935,904 - 48,936,601 (-)NCBI
mRatBN7.2840,038,718 - 40,039,422 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038938798 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000055288.5
RefSeq Acc Id: XP_038938798   ⟸   XM_039082870
- UniProtKB: G3V957 (UniProtKB/TrEMBL),   D3ZIY7 (UniProtKB/TrEMBL),   A0A8J8XHT4 (UniProtKB/TrEMBL),   D3ZAS1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000056823   ⟸   ENSRNOT00000060074
Ensembl Acc Id: ENSRNOP00000055288   ⟸   ENSRNOT00000058491
Ensembl Acc Id: ENSRNOP00000036343   ⟸   ENSRNOT00000035386

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIY7-F1-model_v2 AlphaFold D3ZIY7 1-269 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588815 AgrOrtholog
BioCyc Gene G2FUF-30876 BioCyc
Ensembl Genes ENSRNOG00000032289 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000065186 Ensembl
  ENSRNOG00000069056 Ensembl
Ensembl Transcript ENSRNOT00000058491.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.20 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5 UniProtKB/TrEMBL
  Ribosomal_S5_C UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Ribosomal_S5_euk/arc UniProtKB/TrEMBL
  Ribosomal_S5_N UniProtKB/TrEMBL
  Ribosomal_S5_N_CS UniProtKB/TrEMBL
NCBI Gene 688473 ENTREZGENE
PANTHER PTHR13718 UniProtKB/TrEMBL
  SMALL RIBOSOMAL SUBUNIT PROTEIN US5 UniProtKB/TrEMBL
Pfam Ribosomal_S5 UniProtKB/TrEMBL
  Ribosomal_S5_C UniProtKB/TrEMBL
PhenoGen Rps2-ps42 PhenoGen
PROSITE RIBOSOMAL_S5 UniProtKB/TrEMBL
  S5_DSRBD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032289 RatGTEx
  ENSRNOG00000065186 RatGTEx
  ENSRNOG00000069056 RatGTEx
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
UniProt A0A8J8XHT4 ENTREZGENE
  D3ZAS1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIY7 ENTREZGENE
  G3V957 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-21 Rps2-ps42  ribosomal protein S2, pseudogene 42  Rps2l2  ribosomal protein S2 like 2  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2023-10-16 Rps2l2  ribosomal protein S2 like 2  Rps2l1  ribosomal protein S2 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps2l1  ribosomal protein S2 like 1  LOC688473  similar to 40S ribosomal protein S2  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC688473  similar to 40S ribosomal protein S2  LOC103690283  40S ribosomal protein S2 pseudogene  Data merged from RGD:9363754 737654 PROVISIONAL
2014-08-25 LOC103690283  40S ribosomal protein S2 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC688473  similar to 40S ribosomal protein S2  LOC682718  similar to 40S ribosomal protein S2  Data merged from RGD:1595320 1643240 APPROVED
2006-11-20 LOC682718  similar to 40S ribosomal protein S2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688473  similar to 40S ribosomal protein S2      Symbol and Name status set to provisional 70820 PROVISIONAL