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Gene: Spmip3 (sperm microtubule inner protein 3) Rattus norvegicus

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Symbol:

Spmip3

Name:

sperm microtubule inner protein 3

RGD ID:

1588722

Description:

Orthologous to human SPMIP3 (sperm microtubule inner protein 3); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); aristolochic acid A (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C13h1orf100; hypothetical protein LOC689766; LOC689766; similar to human chromosome 1 open reading frame 100; sperm associated microtubule inner protein 3; uncharacterized protein C1orf100 homolog; uncharacterized protein LOC689766

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,272,502 - 92,295,887 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	92,274,854 - 92,296,883 (+)	Ensembl				GRCr8
mRatBN7.2	13	89,740,464 - 89,771,505 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	89,742,831 - 89,763,817 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,248,183 - 92,269,077 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,648,302 - 93,669,196 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	90,826,714 - 90,847,628 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	95,885,189 - 95,908,003 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	95,887,708 - 95,908,003 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,327,827 - 100,350,564 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	93,654,716 - 93,675,613 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,305,278 - 89,326,149 (+)	NCBI		Celera
Cytogenetic Map	13	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

fulvestrant (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Spmip3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,272,502 - 92,295,887 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	92,274,854 - 92,296,883 (+)	Ensembl				GRCr8
mRatBN7.2	13	89,740,464 - 89,771,505 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	89,742,831 - 89,763,817 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,248,183 - 92,269,077 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,648,302 - 93,669,196 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	90,826,714 - 90,847,628 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	95,885,189 - 95,908,003 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	95,887,708 - 95,908,003 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,327,827 - 100,350,564 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	93,654,716 - 93,675,613 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,305,278 - 89,326,149 (+)	NCBI		Celera
Cytogenetic Map	13	q25	NCBI

SPMIP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	244,352,635 - 244,389,663 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	244,352,635 - 244,389,663 (+)	Ensembl			hg38	GRCh38
GRCh37	1	244,515,937 - 244,552,965 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	242,582,560 - 242,619,016 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	217,805,882 - 217,842,427 (+)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	214,899,368 - 214,935,708 (+)	NCBI		HuRef
CHM1_1	1	245,788,408 - 245,824,900 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	243,768,961 - 243,806,036 (+)	NCBI		T2T-CHM13v2.0

Spmip3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	177,555,704 - 177,580,875 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	177,557,380 - 177,580,890 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	177,728,137 - 177,753,309 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	177,729,814 - 177,753,324 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	179,659,945 - 179,683,436 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	179,566,489 - 179,589,999 (+)	NCBI		MGSCv36	mm8
Celera	1	184,784,737 - 184,808,217 (+)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	82.8	NCBI

Spmip3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	7,651,769 - 7,682,036 (+)	Ensembl
ChiLan1.0	NW_004955406	7,651,785 - 7,682,027 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPMIP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	4,749,066 - 4,786,509 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	4,971,425 - 5,008,854 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	219,964,465 - 220,001,843 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	225,346,231 - 225,382,173 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	225,346,231 - 225,382,166 (+)	Ensembl			panPan2	panpan1.1

SPMIP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	35,408,365 - 35,433,101 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	35,408,424 - 35,432,743 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	34,883,045 - 34,907,782 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	35,236,162 - 35,260,953 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	35,236,221 - 35,260,598 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	35,072,373 - 35,097,098 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	35,088,763 - 35,113,522 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	35,353,506 - 35,378,263 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spmip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	48,329,843 - 48,358,504 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	6,388,882 - 6,410,589 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	6,388,687 - 6,410,589 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPMIP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	17,193,994 - 17,215,443 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	17,198,860 - 17,215,195 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	19,618,682 - 19,636,025 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPMIP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,382,374 - 81,422,483 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	81,393,609 - 81,422,366 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	83,588,736 - 83,630,798 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spmip3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	15,100,460 - 15,119,688 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	15,100,391 - 15,119,873 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spmip3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	56,336,485 - 56,361,392 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spmip3
132 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	33
Count of miRNA genes:	31
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000029081
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1302791	Stl29	Serum triglyceride level QTL 29	3.3	0.0011	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	13	89333129	92500981	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	9	13	34	52	52	22	25	22	1	159	53	21	61	69	30	1	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029081 ⟹ ENSRNOP00000035768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,274,983 - 92,296,883 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,742,919 - 89,763,817 (+)	Ensembl
Rnor_6.0 Ensembl	13	95,887,708 - 95,908,003 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109629 ⟹ ENSRNOP00000089984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,274,854 - 92,295,886 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,742,831 - 89,763,817 (+)	Ensembl

RefSeq Acc Id:

NM_001109549 ⟹ NP_001103019

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,274,983 - 92,295,879 (+)	NCBI
mRatBN7.2	13	89,742,919 - 89,763,817 (+)	NCBI
Rnor_6.0	13	95,887,708 - 95,908,003 (+)	NCBI
Rnor_5.0	13	100,327,827 - 100,350,564 (+)	NCBI
RGSC_v3.4	13	93,654,716 - 93,675,613 (+)	RGD
Celera	13	89,305,278 - 89,326,149 (+)	RGD

Sequence:

show sequence

TGAATGATGTAAAGGGATCAGGTCTCATAGCTCTGCCAAGTGCTTCACAGCATGCCCCACACAG
AGGTGACTCAAACACTTGCTGCCCTCAGAGGAGAACTTTTTTGAAGAAGGAGGAGGCCCCTGCT
CACTGCTACCCAAGCCAGCAATTCGATGCCCATCAATCATGACAACCATCCGACTACGAGAATT
TGTAGAGCGTCGTCCAATGCTTCCACCTAGGCTATATATCACTCACCAAGGAAGGGACGTCAAA
GGCTGGACAACTGGGCAACTGGCAAGACTCCATTTTGATTACAGTGTGAAGAAGGCTCCAAGAC
CCCTCATAGACTTGGCAATTCCACCTAGGAGCAAAACTCCGTACGAGCCGCAATTAGACCAGCA
AACGCTCTTTCGATACATCTGTTATAGAAGATTGTCAAGGCCTACGGACAAGTGGCATAATGAG
ACAACTTATGAAAGAAGCTACTCCCTGCCGTTCTATGAGCTCGGTTGGGATAAGAAACTAGGCA
CGATTTCATCGCATCCTAGACCAGTTAACTCAGTACCAGAAGTCTACTGCTGTGATGAGAGGAA
CGGCTTTGCACGAAGCACTTTTTAAAACTAAAGGAAAATGTTTGGGAAATCAAGATCTACCTTG
AGAACGTGTCATCTGTTGGAGGGGATAGCTTGTGAGGTGCAGTACACTGCTTGTCTGCGACACC
ACCACATAAACGGTGAAATAAAAATGATGTCAGTGTCA

hide sequence

RefSeq Acc Id:

XM_006250332 ⟹ XP_006250394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,272,502 - 92,295,887 (+)	NCBI
mRatBN7.2	13	89,740,464 - 89,763,803 (+)	NCBI
Rnor_6.0	13	95,885,189 - 95,907,989 (+)	NCBI
Rnor_5.0	13	100,327,827 - 100,350,564 (+)	NCBI

Sequence:

show sequence

AGAAGGGAGAGAGTAGTTAAGGACAGAGGTTTCCTCACAATGACCAGTCCTGACTGTGCCCCGC
CTGCACGTGGGACCATAAACCTTTGTCTCTACTGTTCTTTGGCCCAGGGAAGCTAAGGGCTAGC
ACAATCAAGATCAACTCACACTCTGAGCAGACGCAGAGACGGTCCGGTATTGAAGATGCCCATC
AATCATGACAACCATCCGACTACGAGAATTTGTAGAGCGTCGTCCAATGCTTCCACCTAGGCTA
TATATCACTCACCAAGGAAGGGACGTCAAAGGCTGGACAACTGGGCAACTGGCAAGACTCCATT
TTGATTACAGTGTGAAGAAGGCTCCAAGACCCCTCATAGACTTGGCAATTCCACCTAGGAGCAA
AACTCCGTACGAGCCGCAATTAGACCAGCAAACGCTCTTTCGATACATCTGTTATAGAAGATTG
TCAAGGCCTACGGACAAGTGGCATAATGAGACAACTTATGAAAGAAGCTACTCCCTGCCGTTCT
ATGAGCTCGGTTGGGATAAGAAACTAGGCACGATTTCATCGCATCCTAGACCAGTTAACTCAGT
ACCAGAAGTCTACTGCTGTGATGAGAGGAACGGCTTTGCACGAAGCACTTTTTAAAACTAAAGG
AAAATGTTTGGGAAATCAAGATCTACCTTGAGAACGTGTCATCTGTTGGAGGGGATAGCTTGTG
AGGTGCAGTACACTGCTTGTCTGCGACACCACCACATAAACGGTGAAATAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001103019	(Get FASTA)	NCBI Sequence Viewer
	XP_006250394	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94792	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035768.3
	ENSRNOP00000089984.1

RefSeq Acc Id:	NP_001103019 ⟸ NM_001109549
- UniProtKB:	D3ZSS7 (UniProtKB/TrEMBL), A6JGD6 (UniProtKB/TrEMBL), A0A8I6ACQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTIRLREFVERRPMLPPRLYITHQGRDVKGWTTGQLARLHFDYSVKKAPRPLIDLAIPPRSKT PYEPQLDQQTLFRYICYRRLSRPTDKWHNETTYERSYSLPFYELGWDKKLGTISSHPRPVNSVP EVYCCDERNGFARSTF hide sequence

RefSeq Acc Id:	XP_006250394 ⟸ XM_006250332
- Peptide Label:	isoform X1
- UniProtKB:	D3ZSS7 (UniProtKB/TrEMBL), A6JGD6 (UniProtKB/TrEMBL), A0A8I6ACQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTIRLREFVERRPMLPPRLYITHQGRDVKGWTTGQLARLHFDYSVKKAPRPLIDLAIPPRSKT PYEPQLDQQTLFRYICYRRLSRPTDKWHNETTYERSYSLPFYELGWDKKLGTISSHPRPVNSVP EVYCCDERNGFARSTF hide sequence

Ensembl Acc Id:

ENSRNOP00000035768 ⟸ ENSRNOT00000029081

Ensembl Acc Id:

ENSRNOP00000089984 ⟸ ENSRNOT00000109629

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSS7-F1-model_v2	AlphaFold	D3ZSS7	1-144	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699044

Promoter ID:

EPDNEW_R9569

Type:

multiple initiation site

Name:

LOC689766_1

Description:

hypothetical protein LOC689766

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	95,887,754 - 95,887,814	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1588722	AgrOrtholog
BioCyc Gene	G2FUF-17182	BioCyc
Ensembl Genes	ENSRNOG00000021411	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000029081.4	UniProtKB/TrEMBL
	ENSRNOT00000109629.2	UniProtKB/TrEMBL
InterPro	C1orf100	UniProtKB/TrEMBL
KEGG Report	rno:689766	UniProtKB/TrEMBL
NCBI Gene	689766	ENTREZGENE
PANTHER	HYPOTHETICAL PROTEIN LOC689766	UniProtKB/TrEMBL
	PTHR31763	UniProtKB/TrEMBL
Pfam	DUF5530	UniProtKB/TrEMBL
PhenoGen	Spmip3	PhenoGen
RatGTEx	ENSRNOG00000021411	RatGTEx
UniProt	A0A8I6ACQ9	ENTREZGENE, UniProtKB/TrEMBL
	A6JGD6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSS7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-25	Spmip3	sperm microtubule inner protein 3	Spmip3	sperm associated microtubule inner protein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2023-05-05	Spmip3	sperm associated microtubule inner protein 3	C13h1orf100	similar to human chromosome 1 open reading frame 100	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2022-07-21	C13h1orf100	similar to human chromosome 1 open reading frame 100	LOC689766	hypothetical protein LOC689766	Name and Symbol changed	629549	APPROVED
2006-11-19	LOC689766	hypothetical protein LOC689766			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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