Advanced Search (OLGA)

Gene: Glmn (glomulin, FKBP associated protein) Rattus norvegicus

Analyze

Symbol:

Glmn

Name:

glomulin, FKBP associated protein

RGD ID:

1588600

Description:

Predicted to enable hepatocyte growth factor receptor binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase inhibitor activity. Predicted to be involved in several processes, including negative regulation of T cell proliferation; regulation of gene expression; and vasculogenesis. Predicted to act upstream of or within several processes, including neural tube closure; positive regulation of interleukin-2 production; and regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of Cul2-RING ubiquitin ligase complex; Cul3-RING ubiquitin ligase complex; and Cul4A-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation; glomangioma; and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein); INTERACTS WITH 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FKBP associated protein; FKBP-associated protein; glomulin; LOC360907

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GLMN (glomulin, FKBP associated protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Glmn (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Glmn (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GLMN (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GLMN (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Glmn (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GLMN (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GLMN (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Glmn (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Glmn (glomulin, FKBP associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DENND1B (DENN domain containing 1B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	GLMN (glomulin, FKBP associated protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Glmn (glomulin, FKBP associated protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	glmnb (glomulin, FKBP associated protein b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	glmnb (glomulin, FKBP associated protein b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	glmna (glomulin, FKBP associated protein a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG30496	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG30496	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	glmn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	2,332,052 - 2,375,366 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	2,332,497 - 2,375,695 (+)	Ensembl				GRCr8
mRatBN7.2	14	2,187,144 - 2,231,295 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	2,187,642 - 2,230,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	2,065,769 - 2,108,341 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	3,367,584 - 3,410,156 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	2,064,364 - 2,107,681 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	3,204,390 - 3,247,703 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	3,204,390 - 3,247,695 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	3,205,285 - 3,249,200 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	2,744,359 - 2,789,190 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	2,207,607 - 2,249,016 (+)	NCBI		Celera
RGSC_v3.1	14	2,744,817 - 2,758,826 (+)	NCBI
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arteriovenous malformation (ISO)

Blue Rubber Bleb Nevus Syndrome (ISO)

familial glomangioma (ISO)

genetic disease (ISO)

glomangioma (ISO)

glomus tumor (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin M1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dicrotophos (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

formaldehyde (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

leflunomide (ISO)

paracetamol (EXP)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

selenium atom (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell surface receptor signaling pathway (ISO)

circulatory system development (ISO)

epigenetic regulation of gene expression (IEA,ISO)

muscle cell differentiation (IEA,ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of T cell proliferation (IEA,ISO)

neural tube closure (ISO)

positive regulation of cytokine production (IEA,ISO)

positive regulation of interleukin-2 production (ISO)

positive regulation of phosphorylation (IEA,ISO)

regulation of proteasomal ubiquitin-dependent protein catabolic process (ISO)

vasculogenesis (IEA,ISO)

Cellular Component

Cul2-RING ubiquitin ligase complex (IEA,ISO)

Cul3-RING ubiquitin ligase complex (IEA,ISO)

Cul4A-RING E3 ubiquitin ligase complex (IEA,ISO)

cullin-RING ubiquitin ligase complex (IEA,ISO)

cytoplasm (IBA)

Molecular Function

hepatocyte growth factor receptor binding (IEA,ISO)

protein binding (ISO)

signaling receptor binding (IEA,ISO)

ubiquitin protein ligase binding (IEA,ISO)

ubiquitin-protein transferase inhibitor activity (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mutations in a novel factor, glomulin, are responsible for glomuvenous malformations ("glomangiomas").	Brouillard P, etal., Am J Hum Genet. 2002 Apr;70(4):866-74. Epub 2002 Feb 13.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:8955134	PMID:11571281	PMID:12477932	PMID:12604780	PMID:22405651

Genomics

Comparative Map Data

Glmn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	2,332,052 - 2,375,366 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	2,332,497 - 2,375,695 (+)	Ensembl				GRCr8
mRatBN7.2	14	2,187,144 - 2,231,295 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	2,187,642 - 2,230,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	2,065,769 - 2,108,341 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	3,367,584 - 3,410,156 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	2,064,364 - 2,107,681 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	3,204,390 - 3,247,703 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	3,204,390 - 3,247,695 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	3,205,285 - 3,249,200 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	2,744,359 - 2,789,190 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	2,207,607 - 2,249,016 (+)	NCBI		Celera
RGSC_v3.1	14	2,744,817 - 2,758,826 (+)	NCBI
Cytogenetic Map	14	p22	NCBI

GLMN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	92,246,402 - 92,370,844 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	92,245,788 - 92,299,009 (-)	Ensembl			hg38	GRCh38
GRCh37	1	92,711,959 - 92,764,544 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	92,484,543 - 92,537,154 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	90,958,376 - 91,010,996 (-)	NCBI		Celera
Cytogenetic Map	1	p22.1	NCBI
HuRef	1	90,832,161 - 90,885,013 (-)	NCBI		HuRef
CHM1_1	1	92,826,713 - 92,879,343 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	92,091,304 - 92,215,749 (-)	NCBI		T2T-CHM13v2.0

Glmn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	107,696,828 - 107,745,754 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	107,696,833 - 107,745,754 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	107,548,962 - 107,597,888 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	107,548,967 - 107,597,888 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	107,977,986 - 108,026,907 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	107,789,326 - 107,837,877 (-)	NCBI		MGSCv36	mm8
Celera	5	104,662,262 - 104,710,248 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	52.23	NCBI

Glmn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	2,195,423 - 2,232,706 (+)	Ensembl
ChiLan1.0	NW_004955423	2,195,428 - 2,233,389 (+)	NCBI	ChiLan1.0	ChiLan1.0

GLMN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	134,722,953 - 134,778,663 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	133,877,611 - 133,933,453 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	94,907,342 - 94,963,052 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	93,646,499 - 93,701,803 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	93,646,499 - 93,701,430 (-)	Ensembl			panPan2	panpan1.1

GLMN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	56,631,186 - 56,678,397 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	56,644,456 - 56,678,399 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	59,330,330 - 59,378,033 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	57,008,353 - 57,056,901 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	57,021,936 - 57,056,089 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	56,688,187 - 56,736,571 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	56,666,816 - 56,715,030 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	57,127,272 - 57,175,646 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Glmn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	102,120,584 - 102,169,696 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	6,777,965 - 6,829,881 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	6,778,317 - 6,827,384 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GLMN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	124,773,980 - 124,813,335 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	124,773,957 - 124,813,336 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	136,442,586 - 136,467,816 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GLMN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	40,950,948 - 41,007,120 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	40,951,342 - 41,008,791 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	76,991,119 - 77,056,937 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Glmn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624742	5,434,588 - 5,477,647 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Glmn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	17,316,768 - 17,356,717 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Glmn
368 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	127
Count of miRNA genes:	95
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000061583
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
71115	Niddm15	Non-insulin dependent diabetes mellitus QTL 15	4.8		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	11334906	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	17877928	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat

Markers in Region

D14Got3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	2,370,993 - 2,371,165 (+)	Marker Load Pipeline
mRatBN7.2	14	2,226,086 - 2,226,258 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	3,243,323 - 3,243,494	NCBI	Rnor6.0
Rnor_5.0	14	3,243,915 - 3,244,086	UniSTS	Rnor5.0
RGSC_v3.4	14	2,783,907 - 2,784,079	RGD	RGSC3.4
RGSC_v3.4	14	2,783,908 - 2,784,079	UniSTS	RGSC3.4
Celera	14	2,244,744 - 2,244,911	UniSTS
RGSC_v3.1	14	2,783,908 - 2,784,079	RGD
RH 3.4 Map	14	37.1	RGD
RH 3.4 Map	14	37.1	UniSTS
RH 2.0 Map	14	50.4	RGD
Cytogenetic Map	14	p22	UniSTS

RH131951

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	2,223,328 - 2,223,512 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	92,629,544 - 92,629,727	NCBI	Rnor6.0
Rnor_6.0	14	3,240,565 - 3,240,748	NCBI	Rnor6.0
Rnor_5.0	14	3,241,157 - 3,241,340	UniSTS	Rnor5.0
Rnor_5.0	6	102,076,929 - 102,077,112	UniSTS	Rnor5.0
RGSC_v3.4	14	2,781,150 - 2,781,333	UniSTS	RGSC3.4
Celera	14	2,241,986 - 2,242,169	UniSTS
RH 3.4 Map	14	37.2	UniSTS
Cytogenetic Map	14	p22	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH133631

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	2,190,474 - 2,190,676 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	3,207,721 - 3,207,922	NCBI	Rnor6.0
Rnor_5.0	14	3,208,616 - 3,208,817	UniSTS	Rnor5.0
RGSC_v3.4	14	2,747,690 - 2,747,891	UniSTS	RGSC3.4
Celera	14	2,210,941 - 2,211,142	UniSTS
RH 3.4 Map	14	37.2	UniSTS
Cytogenetic Map	14	p22	UniSTS

BE102235

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	2,217,162 - 2,217,312 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	3,234,416 - 3,234,565	NCBI	Rnor6.0
Rnor_5.0	14	3,235,242 - 3,235,391	UniSTS	Rnor5.0
RGSC_v3.4	14	2,775,235 - 2,775,384	UniSTS	RGSC3.4
Celera	14	2,236,424 - 2,236,573	UniSTS
RH 3.4 Map	14	37.2	UniSTS
Cytogenetic Map	14	p22	UniSTS

BF388461

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	2,195,638 - 2,195,778 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	3,212,892 - 3,213,031	NCBI	Rnor6.0
Rnor_5.0	14	3,213,718 - 3,213,857	UniSTS	Rnor5.0
RGSC_v3.4	14	2,753,711 - 2,753,850	UniSTS	RGSC3.4
Celera	14	2,214,963 - 2,215,102	UniSTS
RH 3.4 Map	14	37.2	UniSTS
Cytogenetic Map	14	p22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC162027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061583 ⟹ ENSRNOP00000058301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	2,332,497 - 2,375,695 (+)	Ensembl
mRatBN7.2 Ensembl	14	2,187,642 - 2,230,420 (+)	Ensembl
Rnor_6.0 Ensembl	14	3,204,806 - 3,247,669 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088078 ⟹ ENSRNOP00000072112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	2,332,497 - 2,375,695 (+)	Ensembl
mRatBN7.2 Ensembl	14	2,187,642 - 2,230,420 (+)	Ensembl
Rnor_6.0 Ensembl	14	3,204,390 - 3,247,695 (+)	Ensembl

RefSeq Acc Id:

NM_001105993 ⟹ NP_001099463

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,052 - 2,375,366 (+)	NCBI
mRatBN7.2	14	2,187,144 - 2,230,459 (+)	NCBI
Rnor_6.0	14	3,204,390 - 3,247,695 (+)	NCBI
Rnor_5.0	14	3,205,285 - 3,249,200 (+)	NCBI
RGSC_v3.4	14	2,744,359 - 2,789,190 (+)	RGD
Celera	14	2,207,607 - 2,249,016 (+)	RGD

Sequence:

show sequence

CAACCTGGGAAGAGGCTCTTGTTCGTACCGGTAGCGACTCGGTGGGTGCTGGAAGCCCGGGCAC
TTGGGCCCAGAGATTCATTTCAGCATCAAAACTAGGAAAAGTAATTAGGAATGGCTGTGGAGGA
ACTTCAGTGCATAATAAAAAGATGTCAAATCCTAGAAGAGCATGATTTTAAAGAAGAAGATTTT
GGCCTCTTTCAGCTAGCAGGCCAAAGATGCATTGAAGATGGGTATATAAACCAGCTGCTAGAGA
TTATTCAAGATGAAAAGAACAAGACCATCATTAAGACTATGGGGTGGAATCTTGTTGGTCCTGT
TGTCCGATGCCTCCTGAGGGGCAGGGAAGAGGATAAAAGAGAAGAGTGTTTTCTGATCTTTGAT
TTGCTGGTGAAGTTGTGTAATCCAAAGGAATTGTTGTTGGGTTTGCTTGAACTCATTGAAGAGC
CCTCCGGGAAACAGATATCTCAAATTATTCTTCTTTTACTGCAACCATTACAGACAGTTATTCA
GAAACTTCCTAACAACAAGGCATACTCGGCTGGATTAGCATTGTCCACGCTCTGGAGTCAGCTG
TCTCTTCTTCCTGTCCCACACTCAGAAGAACAAATACAGGCAGATGACTATGGCCTTTGTCAGT
GTTGCAGGGCCTTGATAGAGTTCACGAAACCCTTTGTGGCAGAAGTTGCTAGTGATAAAGAAGA
CCCAGCAAACACAAAGCTGAAGGATGAACTACTGAAATTCTGTTTCAAAAGCTTGAAATGCCCT
TTGCTGACAGCACAATTCCTCGAACAGTCTGAAGAAGTTGGAAATGACCCTTTCCGGTGTTTTG
CATCTGAAATAATAGGATTTTTATCACAAATTGGATATCCTGTCCCCCAAATTATTCTTAATCA
TGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAAGAAGACAGACAACTGGCA
GACTCTGTGGCTGCTCTGACATACCTAGTCTTTGTTCAGGGCATCGGTACCGACCAGCTTCCCA
TGGTCTTAAGCCCTTCATACCTTTTGCAGTTGAACATGGAGCACATTGAAGTGCTTCTGCAAAG
AACAGAACAGTCTGTTTACTCCAAAGGCTTGGAACTGCTGGAGACTAGCTTATTGAGATTAGAA
GACAACAGCCTATGTTATCAGTACCTAGAAATCAAGAGTTTCCTTGCTGTGCCTCAGGGCTTAG
TCAAAGTCATGACACTCTGTCCCATTGAGACACTGAGGAAAACAGGGTTAGCCATGCTTCAGCT
GTACATCGACAAGTTGGACTCCCAAGGCAAATACACATTATTTAGGTGCTTACTAAATACGAGT
AATCACTCAGGTGTGGAAGCCTTTGTAATTCAAAATATCAAAAATCAGATTGATTTATCATATA
AGAAAACCCATAACAGGTGGTTTGCAGGCGCACAGCTGACCTCTCTGTTAGACCTGGTCCTGTC
CCTCCCTGAGGGCGCTGAGACAGATTTACTGCAGAACTCAGACCGGATTATGGCTTCACTAAAT
TTGTTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAACCAAACTGGATTATGGACAGAGC
TTGGAAAGATTGAAAATAACTTTCTACAGCCACTTCATGTAGGACTTAATATGTCAAAGGCACA
TTATGAAGCAGAGATTAAAAACAGCCAACAAAATAGCCAAGCTGCCTCAATGTGTAAAAGTGTT
TGTTCTGTGACTGTAGGCGGAGAAGAAATCCCCACTATGCCTCCTGAGATGCAGCTTAAGGTCT
TACATTCCGCCCTCTTCACATTCGACTTGATTGAAAGTGTCCTGGCTCGAGTCGAAGAACTCAT
TGAAATCAAATCAAAGTCTACCTCTGAGGAAAACGCTGGGATGAAGTAAAAGCTCTACTTCATG
AATAAAAACCAATAAAATGCCATTTTTCATTATAGTTTATACTGCCATAAAATAGTTGCAGAAA
TTTTACTAC

hide sequence

RefSeq Acc Id:

XM_008769922 ⟹ XP_008768144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,409 - 2,375,345 (+)	NCBI
mRatBN7.2	14	2,187,531 - 2,230,433 (+)	NCBI
Rnor_6.0	14	3,204,792 - 3,247,656 (+)	NCBI

Sequence:

show sequence

GCCCCAGACCGGGGGCGGGGTCATGAGTGCGGCCTACGTAGCCAGAGTGGAGACGGAGGGCAAG
AAGCAGGCGCGTGGACTGGCGGTTCATTTCAGCATCAAAACTAGGAAAAGTAATTAGGAATGGC
TGTGGAGGAACTTCAGTGCATAATAAAAAGATGTCAAATCCTAGAAGAGCATGATTTTAAAGAA
GAAGATTTTGGCCTCTTTCAGCTAGCAGGCCAAAGATGCATTGAAGATGGGTATATAAACCAGC
TGCTAGAGATTATTCAAGATGAAAAGAACAAGACCATCATTAAGACTATGGGGTGGAATCTTGT
TGGTCCTGTTGTCCGATGCCTCCTGAGGGGCAGGGAAGAGGATAAAAGAGAAGAGTGTTTTCTG
ATCTTTGATTTGCTGGTGAAGTTGTGTAATCCAAAGGAATTGTTGTTGGGTTTGCTTGAACTCA
TTGAAGAGCCCTCCGGGAAACAGATATCTCAAATTATTCTTCTTTTACTGCAACCATTACAGAC
AGTTATTCAGAAACTTCCTAACAACAAGGCATACTCGGCTGGATTAGCATTGTCCACGCTCTGG
AGTCAGCTGTCTCTTCTTCCTGTCCCACACTCAGAAGAACAAATACAGGCAGATGACTATGGCC
TTTGTCAGTGTTGCAGGGCCTTGATAGAGTTCACGAAACCCTTTGTGGCAGAAGTTGCTAGTGA
TAAAGAAGACCCAGCAAACACAAAGCTGAAGGATGAACTACTGAAATTCTGTTTCAAAAGCTTG
AAATGCCCTTTGCTGACAGCACAATTCCTCGAACAGTCTGAAGAAGTTGGAAATGACCCTTTCC
GGTGTTTTGCATCTGAAATAATAGGATTTTTATCACAAATTGGATATCCTGTCCCCCAAATTAT
TCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAAGAAGACAGA
CAACTGGCAGACTCTGTGGCTGCTCTGACATACCTAGTCTTTGTTCAGGGCATCGGTACCGACC
AGCTTCCCATGGTCTTAAGCCCTTCATACCTTTTGCAGTTGAACATGGAGCACATTGAAGTGCT
TCTGCAAAGAACAGAACAGTCTGTTTACTCCAAAGGCTTGGAACTGCTGGAGACTAGCTTATTG
AGATTAGAAGACAACAGCCTATGTTATCAGTACCTAGAAATCAAGAGTTTCCTTGCTGTGCCTC
AGGGCTTAGTCAAAGTCATGACACTCTGTCCCATTGAGACACTGAGGAAAACAGGGTTAGCCAT
GCTTCAGCTGTACATCGACAAGTTGGACTCCCAAGGCAAATACACATTATTTAGGTGCTTACTA
AATACGAGTAATCACTCAGGTGTGGAAGCCTTTGTAATTCAAAATATCAAAAATCAGATTGATT
TATCATATAAGAAAACCCATAACAGGTGGTTTGCAGGCGCACAGCTGACCTCTCTGTTAGACCT
GGTCCTGTCCCTCCCTGAGGGCGCTGAGACAGATTTACTGCAGAACTCAGACCGGATTATGGCT
TCACTAAATTTGTTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAACCAAACTGGATTAT
GGACAGAGCTTGGAAAGATTGAAAATAACTTTCTACAGCCACTTCATGTAGGACTTAATATGTC
AAAGGCACATTATGAAGCAGAGATTAAAAACAGCCAACAAAATAGCCAAGCTGCCTCAATGTGT
AAAAGTGTTTGTTCTGTGACTGTAGGCGGAGAAGAAATCCCCACTATGCCTCCTGAGATGCAGC
TTAAGGTCTTACATTCCGCCCTCTTCACATTCGACTTGATTGAAAGTGTCCTGGCTCGAGTCGA
AGAACTCATTGAAATCAAATCAAAGTCTACCTCTGAGGAAAACGCTGGGATGAAGTAAAAGCTC
TACTTCATGAATAAAAACCAATAAAATGCCATTTTTCATTATA

hide sequence

RefSeq Acc Id:

XM_008769923 ⟹ XP_008768145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,515 - 2,375,345 (+)	NCBI
mRatBN7.2	14	2,187,638 - 2,230,433 (+)	NCBI
Rnor_6.0	14	3,204,884 - 3,247,656 (+)	NCBI

Sequence:

show sequence

GGACGTGCAGGATCAGGGTGGATCGGGCTCGCCGAACACGACCTGCGCCGCACGCGGCTCGCCT
GCTAGGCCCCTGGAGGTGCTGGAGCCTGGACGCCCTGCTCTACAGGAGCTGGGGGAGGAAGAAA
TGGCCTCCTTTCGGCTCAGCCCACAGGCGCGTTCATTTCAGCATCAAAACTAGGAAAAGTAATT
AGGAATGGCTGTGGAGGAACTTCAGTGCATAATAAAAAGATGTCAAATCCTAGAAGAGCATGAT
TTTAAAGAAGAAGATTTTGGCCTCTTTCAGCTAGCAGGCCAAAGATGCATTGAAGATGGGTATA
TAAACCAGCTGCTAGAGATTATTCAAGATGAAAAGAACAAGACCATCATTAAGACTATGGGGTG
GAATCTTGTTGGTCCTGTTGTCCGATGCCTCCTGAGGGGCAGGGAAGAGGATAAAAGAGAAGAG
TGTTTTCTGATCTTTGATTTGCTGGTGAAGTTGTGTAATCCAAAGGAATTGTTGTTGGGTTTGC
TTGAACTCATTGAAGAGCCCTCCGGGAAACAGATATCTCAAATTATTCTTCTTTTACTGCAACC
ATTACAGACAGTTATTCAGAAACTTCCTAACAACAAGGCATACTCGGCTGGATTAGCATTGTCC
ACGCTCTGGAGTCAGCTGTCTCTTCTTCCTGTCCCACACTCAGAAGAACAAATACAGGCAGATG
ACTATGGCCTTTGTCAGTGTTGCAGGGCCTTGATAGAGTTCACGAAACCCTTTGTGGCAGAAGT
TGCTAGTGATAAAGAAGACCCAGCAAACACAAAGCTGAAGGATGAACTACTGAAATTCTGTTTC
AAAAGCTTGAAATGCCCTTTGCTGACAGCACAATTCCTCGAACAGTCTGAAGAAGTTGGAAATG
ACCCTTTCCGGTGTTTTGCATCTGAAATAATAGGATTTTTATCACAAATTGGATATCCTGTCCC
CCAAATTATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAA
GAAGACAGACAACTGGCAGACTCTGTGGCTGCTCTGACATACCTAGTCTTTGTTCAGGGCATCG
GTACCGACCAGCTTCCCATGGTCTTAAGCCCTTCATACCTTTTGCAGTTGAACATGGAGCACAT
TGAAGTGCTTCTGCAAAGAACAGAACAGTCTGTTTACTCCAAAGGCTTGGAACTGCTGGAGACT
AGCTTATTGAGATTAGAAGACAACAGCCTATGTTATCAGTACCTAGAAATCAAGAGTTTCCTTG
CTGTGCCTCAGGGCTTAGTCAAAGTCATGACACTCTGTCCCATTGAGACACTGAGGAAAACAGG
GTTAGCCATGCTTCAGCTGTACATCGACAAGTTGGACTCCCAAGGCAAATACACATTATTTAGG
TGCTTACTAAATACGAGTAATCACTCAGGTGTGGAAGCCTTTGTAATTCAAAATATCAAAAATC
AGATTGATTTATCATATAAGAAAACCCATAACAGGTGGTTTGCAGGCGCACAGCTGACCTCTCT
GTTAGACCTGGTCCTGTCCCTCCCTGAGGGCGCTGAGACAGATTTACTGCAGAACTCAGACCGG
ATTATGGCTTCACTAAATTTGTTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAACCAAA
CTGGATTATGGACAGAGCTTGGAAAGATTGAAAATAACTTTCTACAGCCACTTCATGTAGGACT
TAATATGTCAAAGGCACATTATGAAGCAGAGATTAAAAACAGCCAACAAAATAGCCAAGCTGCC
TCAATGTGTAAAAGTGTTTGTTCTGTGACTGTAGGCGGAGAAGAAATCCCCACTATGCCTCCTG
AGATGCAGCTTAAGGTCTTACATTCCGCCCTCTTCACATTCGACTTGATTGAAAGTGTCCTGGC
TCGAGTCGAAGAACTCATTGAAATCAAATCAAAGTCTACCTCTGAGGAAAACGCTGGGATGAAG
TAAAAGCTCTACTTCATGAATAAAAACCAATAAAATGCCATTTTTCATTATA

hide sequence

RefSeq Acc Id:

XM_008769924 ⟹ XP_008768146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,421 - 2,362,031 (+)	NCBI
mRatBN7.2	14	2,187,531 - 2,231,295 (+)	NCBI
Rnor_6.0	14	3,204,884 - 3,247,703 (+)	NCBI

Sequence:

show sequence

GGACGTGCAGGATCAGGGTGGATCGGGCTCGCCGAACACGACCTGCGCCGCACGCGGCTCGCCT
GCTAGGCCCCTGGAGGTGCTGGAGCCTGGACGCCCTGCTCTACAGGAGCTGGGGGAGGAAGAAA
TGGCCTCCTTTCGGCTCAGCCCACAGGCGCGGTAGGATGTGATTTTCCTGTTCGCGCCTGCAGG
GCAAGGACCATCACTGCTGGCCTCATTTTCGTGATATTTGGTGATCTCACTGATGATTGTTTCT
GTGATGAGGGAGGTCCTGTGGAGAACGGGGTGGGCGGCATCGGAATCTTCAACTTCTTGGGGTG
ACTTAATGGTGTCGGATTCCAGTTTTTGTCAATGGGACATTTAAAAAATTACCTAATGTTTCAT
TCAAGGTCCATAGTGTGAATTTTTGTTTTTCATGAAGGATTACTTTCTCCTTTTAAAGAAGGGT
CTTCTAGTAGTTCTTTCTAGGGCTCTTTTTCTTTTTTTACTTACCATTCTTTCAAAATTCTGCT
GTTTAGGCATTACAGTAGGGGCTTTAAAAATGCTTCATTAGGCCAAGGCACTAACGTTCAGTAA
TAGCAGTTAACCTATAAAACTTTTCATTGTGTTGTCTAATAATTCAAAATGAAACAGTTTATGA
AACATGAAAGTTACATGGTATCACACAATTAACTGTTTTGTATTAGTTCATTTCAGCATCAAAA
CTAGGAAAAGTAATTAGGAATGGCTGTGGAGGAACTTCAGTGCATAATAAAAAGATGTCAAATC
CTAGAAGAGCATGATTTTAAAGAAGAAGATTTTGGCCTCTTTCAGCTAGCAGGCCAAAGATGCA
TTGAAGATGGGTATATAAACCAGCTGCTAGAGATTATTCAAGATGAAAAGAACAAGACCATCAT
TAAGACTATGGGGTGGAATCTTGTTGGTCCTGTTGTCCGATGCCTCCTGAGGGGCAGGGAAGAG
GATAAAAGAGAAGAGTGTTTTCTGATCTTTGATTTGCTGGTGAAGTTGTGTAATCCAAAGGAAT
TGTTGTTGGGTTTGCTTGAACTCATTGAAGAGCCCTCCGGGAAACAGATATCTCAAATTATTCT
TCTTTTACTGCAACCATTACAGACAGTTATTCAGAAACTTCCTAACAACAAGGCATACTCGGCT
GGATTAGCATTGTCCACGCTCTGGAGTCAGCTGTCTCTTCTTCCTGTCCCACACTCAGAAGAAC
AAATACAGGCAGATGACTATGGCCTTTGTCAGTGTTGCAGGGCCTTGATAGAGTTCACGAAACC
CTTTGTGGCAGAAGTTGCTAGTGATAAAGAAGACCCAGCAAACACAAAGCTGAAGGATGAACTA
CTGAAATTCTGTTTCAAAAGCTTGAAATGCCCTTTGCTGACAGCACAATTCCTCGAACAGTCTG
AAGAAGTTGGAAATGACCCTTTCCGGTGTTTTGCATCTGAAATAATAGGATTTTTATCACAAAT
TGGATATCCTGTCCCCCAAATTATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTT
GAATTTGAAGAAGAAGAAGACAGACAACTGGCAGACTCTGTGGCTGCTCTGACATACCTAGTCT
TTGTTCAGGGCATCGGTACCGACCAGCTTCCCATGGTCTTAAGCCCTTCATACCTTTTGCAGTT
GAACATGGAGCACATTGAAGTGCTTCTGCAAAGAACAGAACAGTCTGTTTACTCCAAAGGCTTG
GAACTGCTGGAGACTAGCTTATTGAGATTAGAAGACAACAGCCTATGTTATCAGTACCTAGAAA
TCAAGAGTTTCCTTGCTGTGCCTCAGGGCTTAGTCAAAGTCATGACACTCTGTCCCATTGAGAC
ACTGAGGAAAACAGGGTTAGCCATGCTTCAGCTGTACATCGACAAGTTGGACTCCCAAGGCAAA
TACACATTATTTAGGTGCTTACTAAATACGAGTAATCACTCAGGTGTGGAAGCCTTTGTAATTC
AAAATATCAAAAATCAGATTGATTTATCATATAAGAAAACCCATAACAGGTGGTTTGCAGGCGC
ACAGCTGACCTCTCTGTTAGACCTGGTCCTGTCCCTCCCTGAGGGCGCTGAGACAGATTTACTG
CAGAACTCAGACCGGATTATGGCTTCACTAAATTTGTTGAGGTATTTGGTTATCAAAGATAATG
AAGATGACAACCAAACTGGATTATGGACAGAGCTTGGAAAGATTGAAAATAACTTTCTACAGCC
ACTTCATGTAGGACTTAATATGTCAAAGGCACATTATGAAGCAGAGATTAAAAACAGCCAACAA
AATAGCCAAGGCGGAGAAGAAATCCCCACTATGCCTCCTGAGATGCAGCTTAAGGTCTTACATT
CCGCCCTCTTCACATTCGACTTGATTGAAAGTGTCCTGGCTCGAGTCGAAGAACTCATTGAAAT
CAAATCAAAGTCTACCTCTGAGGAAAACGCTGGGATGAAGTAAAAGCTCTACTTCATGAATAAA
AACCAATAAAATGCCATTTTTCATTATAGTTTATACTGCCATAAAATAGTTGCAGAAATTTTAC
TACAAGAAAAA

hide sequence

RefSeq Acc Id:

XM_039091653 ⟹ XP_038947581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,547 - 2,375,345 (+)	NCBI
mRatBN7.2	14	2,187,638 - 2,230,433 (+)	NCBI

RefSeq Acc Id:

XM_039091657 ⟹ XP_038947585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,344,614 - 2,375,345 (+)	NCBI
mRatBN7.2	14	2,187,614 - 2,231,295 (+)	NCBI

RefSeq Acc Id:

XM_063272890 ⟹ XP_063128960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,421 - 2,357,900 (+)	NCBI

RefSeq Acc Id:

XR_005492903

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	2,332,421 - 2,360,035 (+)	NCBI
mRatBN7.2	14	2,187,531 - 2,215,128 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099463	(Get FASTA)	NCBI Sequence Viewer
	NP_001423982	(Get FASTA)	NCBI Sequence Viewer
	XP_008768144	(Get FASTA)	NCBI Sequence Viewer
	XP_008768145	(Get FASTA)	NCBI Sequence Viewer
	XP_008768146	(Get FASTA)	NCBI Sequence Viewer
	XP_038947581	(Get FASTA)	NCBI Sequence Viewer
	XP_038947585	(Get FASTA)	NCBI Sequence Viewer
	XP_063128960	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83975	(Get FASTA)	NCBI Sequence Viewer
	EDL83976	(Get FASTA)	NCBI Sequence Viewer
	EDL83977	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058301
	ENSRNOP00000058301.1
	ENSRNOP00000072112.2

RefSeq Acc Id:

NP_001099463 ⟸ NM_001105993

- UniProtKB:

D3ZKQ3 (UniProtKB/TrEMBL), A6KPI8 (UniProtKB/TrEMBL), A0A0G2K255 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVEELQCIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKTMGWN
LVGPVVRCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPL
QTVIQKLPNNKAYSAGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCRALIEFTKPFVAEVA
SDKEDPANTKLKDELLKFCFKSLKCPLLTAQFLEQSEEVGNDPFRCFASEIIGFLSQIGYPVPQ
IILNHGRKKRTWDYLEFEEEEDRQLADSVAALTYLVFVQGIGTDQLPMVLSPSYLLQLNMEHIE
VLLQRTEQSVYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKTGL
AMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSYKKTHNRWFAGAQLTSLL
DLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQTGLWTELGKIENNFLQPLHVGLN
MSKAHYEAEIKNSQQNSQAASMCKSVCSVTVGGEEIPTMPPEMQLKVLHSALFTFDLIESVLAR
VEELIEIKSKSTSEENAGMK

hide sequence

RefSeq Acc Id:

XP_008768144 ⟸ XM_008769922

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAVEELQCIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKTMGWN
LVGPVVRCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPL
QTVIQKLPNNKAYSAGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCRALIEFTKPFVAEVA
SDKEDPANTKLKDELLKFCFKSLKCPLLTAQFLEQSEEVGNDPFRCFASEIIGFLSQIGYPVPQ
IILNHGRKKRTWDYLEFEEEEDRQLADSVAALTYLVFVQGIGTDQLPMVLSPSYLLQLNMEHIE
VLLQRTEQSVYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKTGL
AMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSYKKTHNRWFAGAQLTSLL
DLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQTGLWTELGKIENNFLQPLHVGLN
MSKAHYEAEIKNSQQNSQAASMCKSVCSVTVGGEEIPTMPPEMQLKVLHSALFTFDLIESVLAR
VEELIEIKSKSTSEENAGMK

hide sequence

RefSeq Acc Id:

XP_008768146 ⟸ XM_008769924

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAVEELQCIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKTMGWN
LVGPVVRCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPL
QTVIQKLPNNKAYSAGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCRALIEFTKPFVAEVA
SDKEDPANTKLKDELLKFCFKSLKCPLLTAQFLEQSEEVGNDPFRCFASEIIGFLSQIGYPVPQ
IILNHGRKKRTWDYLEFEEEEDRQLADSVAALTYLVFVQGIGTDQLPMVLSPSYLLQLNMEHIE
VLLQRTEQSVYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKTGL
AMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSYKKTHNRWFAGAQLTSLL
DLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQTGLWTELGKIENNFLQPLHVGLN
MSKAHYEAEIKNSQQNSQGGEEIPTMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKSKSTS
EENAGMK

hide sequence

RefSeq Acc Id:	XP_008768145 ⟸ XM_008769923
- Peptide Label:	isoform X1
- UniProtKB:	D3ZKQ3 (UniProtKB/TrEMBL), A6KPI8 (UniProtKB/TrEMBL), A0A0G2K255 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVEELQCIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKTMGWN LVGPVVRCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPL QTVIQKLPNNKAYSAGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCRALIEFTKPFVAEVA SDKEDPANTKLKDELLKFCFKSLKCPLLTAQFLEQSEEVGNDPFRCFASEIIGFLSQIGYPVPQ IILNHGRKKRTWDYLEFEEEEDRQLADSVAALTYLVFVQGIGTDQLPMVLSPSYLLQLNMEHIE VLLQRTEQSVYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKTGL AMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSYKKTHNRWFAGAQLTSLL DLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQTGLWTELGKIENNFLQPLHVGLN MSKAHYEAEIKNSQQNSQAASMCKSVCSVTVGGEEIPTMPPEMQLKVLHSALFTFDLIESVLAR VEELIEIKSKSTSEENAGMK hide sequence

Ensembl Acc Id:

ENSRNOP00000058301 ⟸ ENSRNOT00000061583

Ensembl Acc Id:

ENSRNOP00000072112 ⟸ ENSRNOT00000088078

RefSeq Acc Id:	XP_038947585 ⟸ XM_039091657
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038947581 ⟸ XM_039091653
- Peptide Label:	isoform X1
- UniProtKB:	D3ZKQ3 (UniProtKB/TrEMBL), A6KPI8 (UniProtKB/TrEMBL), A0A0G2K255 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128960 ⟸ XM_063272890
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZKQ3-F1-model_v2	AlphaFold	D3ZKQ3	1-596	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699161

Promoter ID:

EPDNEW_R9683

Type:

initiation region

Name:

Glmn_1

Description:

glomulin, FKBP associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	3,204,835 - 3,204,895	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1588600	AgrOrtholog
BioCyc Gene	G2FUF-16625	BioCyc
Ensembl Genes	ENSRNOG00000002054	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061583	ENTREZGENE
	ENSRNOT00000061583.5	UniProtKB/TrEMBL
	ENSRNOT00000088078.3	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134639	IMAGE-MGC_LOAD
InterPro	Glomulin	UniProtKB/TrEMBL
	Unchr_YAP/Alf4/glomulin	UniProtKB/TrEMBL
KEGG Report	rno:289437	UniProtKB/TrEMBL
MGC_CLONE	MGC:94443	IMAGE-MGC_LOAD
NCBI Gene	289437	ENTREZGENE
PANTHER	Glomulin	UniProtKB/TrEMBL
	GLOMULIN	UniProtKB/TrEMBL
Pfam	DUF1760	UniProtKB/TrEMBL
PhenoGen	Glmn	PhenoGen
RatGTEx	ENSRNOG00000002054	RatGTEx
UniProt	A0A0G2K255	ENTREZGENE, UniProtKB/TrEMBL
	A6KPI8	ENTREZGENE, UniProtKB/TrEMBL
	A6KPJ0_RAT	UniProtKB/TrEMBL
	D3ZKQ3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2007-01-10	Glmn	FKBP-associated protein	Glmn_predicted	glomulin, FKBP associated protein (predicted)	Data merged from RGD:1306775	737654	APPROVED
2006-11-19	Glmn	FKBP-associated protein			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Glmn_predicted	glomulin, FKBP associated protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM