C17h6orf62-ps1 (similar to human chromosome 6 open reading frame 62, pseudogene 1) - Rat Genome Database

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Gene: C17h6orf62-ps1 (similar to human chromosome 6 open reading frame 62, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: C17h6orf62-ps1 (Ensembl: LOC100911664)
Name: similar to human chromosome 6 open reading frame 62, pseudogene 1 (Ensembl:uncharacterized LOC100911664)
RGD ID: 1588449
Description: Orthologous to human C6orf62 (chromosome 6 open reading frame 62).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: hypothetical protein LOC498750; LOC498750; similar to cDNA sequence BC005537; Uncharacterized protein C6orf62 homolog-like; uncharacterized protein LOC498750
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: C17h6orf62  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84102,808,588 - 102,809,193 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.24101,258,582 - 101,259,187 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4106,391,235 - 106,393,160 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04102,166,274 - 102,168,199 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04100,747,381 - 100,749,306 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0317,979,714 - 17,980,319 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera316,949,558 - 16,950,163 (-)NCBICelera
Cytogenetic Map4q32NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in C17h6orf62-ps1
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)480216705104243248Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat

Markers in Region
RH127745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,256,256 - 40,256,461 (+)MAPPERmRatBN7.2
Rnor_6.01742,257,017 - 42,257,221NCBIRnor6.0
Rnor_5.01744,124,816 - 44,125,020UniSTSRnor5.0
RGSC_v3.41747,317,843 - 47,318,047UniSTSRGSC3.4
Celera1739,893,543 - 39,893,747UniSTS
Cytogenetic Map17p11UniSTS
RH140503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,259,504 - 40,259,751 (+)MAPPERmRatBN7.2
Rnor_6.01742,260,263 - 42,260,509NCBIRnor6.0
Rnor_5.01744,128,062 - 44,128,308UniSTSRnor5.0
RGSC_v3.41747,321,090 - 47,321,336UniSTSRGSC3.4
Celera1739,896,790 - 39,897,036UniSTS
Cytogenetic Map17p11UniSTS
RH118352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,259,415 - 40,259,585 (+)MAPPERmRatBN7.2
Rnor_6.01742,260,174 - 42,260,343NCBIRnor6.0
Rnor_5.01744,127,973 - 44,128,142UniSTSRnor5.0
RGSC_v3.41747,321,001 - 47,321,170UniSTSRGSC3.4
Celera1739,896,701 - 39,896,870UniSTS
Cytogenetic Map17p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


RefSeq Acc Id: NM_001017510   ⟹   NP_001017510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24101,258,112 - 101,260,037 (+)NCBI
Rnor_6.0317,979,714 - 17,980,319 (-)NCBI
Rnor_5.0323,251,474 - 23,252,079 (-)NCBI
RGSC_v3.41747,318,994 - 47,346,617 (-)RGD
Celera316,949,558 - 16,950,163 (-)NCBI
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TP28-F1-model_v2 AlphaFold Q7TP28 1-229 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588449 AgrOrtholog
BioCyc Gene G2FUF-44262 BioCyc
IMAGE_CLONE IMAGE:7123624 IMAGE-MGC_LOAD
  IMAGE:7302835 IMAGE-MGC_LOAD
MGC_CLONE MGC:105535 IMAGE-MGC_LOAD
  MGC:95046 IMAGE-MGC_LOAD
NCBI Gene 498750 ENTREZGENE
PhenoGen C17h6orf62-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-12 C17h6orf62-ps1  similar to human chromosome 6 open reading frame 62, pseudogene 1  LOC498750  similar to cDNA sequence BC005537  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2006-11-19 LOC498750  similar to cDNA sequence BC005537      Symbol and Name status set to provisional 70820 PROVISIONAL