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Gene: Rtl4 (retrotransposon Gag like 4) Rattus norvegicus

Analyze

Symbol:

Rtl4

Name:

retrotransposon Gag like 4

RGD ID:

1588188

Description:

Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within cognition and norepinephrine metabolic process. Orthologous to human RTL4 (retrotransposon Gag like 4); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC680778; retrotransposon Gag-like protein 4; similar to zinc finger, CCHC domain containing 5; Zcchc16; zinc finger CCHC domain-containing protein 16; zinc finger CCHC-type containing 16; zinc finger, CCHC domain containing 16

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RTL4 (retrotransposon Gag like 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rtl4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rtl4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RTL4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RTL4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rtl4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RTL4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RTL4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rtl4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rtl4 (retrotransposon Gag like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RTL4 (retrotransposon Gag like 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rtl4 (retrotransposon Gag like 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	113,025,880 - 113,438,686 (+)	Ensembl				GRCr8
mRatBN7.2	X	108,231,052 - 108,641,768 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	108,633,651 - 108,640,050 (+)	Ensembl				mRatBN7.2
Rnor_6.0	X	115,908,999 - 116,402,406 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	116,399,611 - 116,400,516 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	116,465,029 - 116,543,231 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	33,404,885 - 33,405,790 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	107,618,493 - 108,025,880 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

aflatoxin B1 (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

CGP 52608 (ISO)

decabromodiphenyl ether (EXP)

dibenzofurans (ISO)

dichloroacetic acid (ISO)

fulvestrant (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cognition (ISO)

norepinephrine metabolic process (ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:26402067

Genomics

Comparative Map Data

Rtl4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	113,025,880 - 113,438,686 (+)	Ensembl				GRCr8
mRatBN7.2	X	108,231,052 - 108,641,768 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	108,633,651 - 108,640,050 (+)	Ensembl				mRatBN7.2
Rnor_6.0	X	115,908,999 - 116,402,406 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	116,399,611 - 116,400,516 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	116,465,029 - 116,543,231 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	33,404,885 - 33,405,790 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	107,618,493 - 108,025,880 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

RTL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	112,083,013 - 112,457,514 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	112,082,965 - 112,458,566 (+)	Ensembl			hg38	GRCh38
GRCh37	X	111,326,241 - 111,700,742 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	111,212,909 - 111,587,129 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	111,805,763 - 112,184,591 (+)	NCBI		Celera
Cytogenetic Map	X	q23	NCBI
HuRef	X	100,946,374 - 101,322,365 (+)	NCBI		HuRef
CHM1_1	X	111,237,477 - 111,611,887 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	110,531,358 - 110,907,626 (+)	NCBI		T2T-CHM13v2.0

Rtl4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	143,471,147 - 143,905,410 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	143,471,903 - 143,905,407 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	144,688,209 - 145,122,414 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	144,688,907 - 145,122,411 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	141,123,450 - 141,556,953 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	140,365,456 - 140,368,776 (+)	NCBI		MGSCv36	mm8
Celera	X	128,644,641 - 129,073,163 (+)	NCBI		Celera
Cytogenetic Map	X	F2	NCBI
cM Map	X	65.85	NCBI

Rtl4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955490	3,403,958 - 3,497,789 (-)	NCBI	ChiLan1.0	ChiLan1.0

RTL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	111,916,075 - 111,946,035 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	111,919,823 - 111,949,643 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	101,191,619 - 101,570,815 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	112,024,468 - 112,027,070 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

RTL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	85,117,015 - 85,609,928 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	85,512,467 - 85,513,375 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	71,610,796 - 71,623,667 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	87,193,067 - 87,205,938 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	87,202,198 - 87,203,106 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	84,656,673 - 84,669,544 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	86,331,789 - 86,344,656 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	86,168,927 - 86,181,831 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rtl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	84,383,324 - 84,757,393 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936499	2,901,534 - 2,904,565 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RTL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	92,223,747 - 92,335,430 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	91,920,451 - 92,333,326 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	106,588,456 - 106,697,981 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RTL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	99,857,087 - 100,206,786 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	100,203,031 - 100,203,963 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	25,548,015 - 25,552,986 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rtl4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624803	3,016,865 - 3,494,115 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rtl4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	98,739,615 - 98,742,647 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rtl4
3044 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	105
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000050854
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
4	3	51	121	42	34	14	12	14	1	180	80	2	105	80	88	20	8	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050854 ⟹ ENSRNOP00000061685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,375 - 113,438,566 (+)	Ensembl
mRatBN7.2 Ensembl	X	108,636,062 - 108,640,050 (+)	Ensembl
Rnor_6.0 Ensembl	X	116,399,611 - 116,400,516 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116205 ⟹ ENSRNOP00000089653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,340 - 113,438,552 (+)	Ensembl
mRatBN7.2 Ensembl	X	108,633,651 - 108,640,050 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123397 ⟹ ENSRNOP00000107459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,025,880 - 113,438,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124871 ⟹ ENSRNOP00000106381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,340 - 113,438,686 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126880 ⟹ ENSRNOP00000102970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,340 - 113,438,686 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137479 ⟹ ENSRNOP00000102618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,340 - 113,438,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144598 ⟹ ENSRNOP00000100579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,028,360 - 113,438,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153191 ⟹ ENSRNOP00000106063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,345 - 113,438,686 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159588 ⟹ ENSRNOP00000108207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,025,880 - 113,438,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170785 ⟹ ENSRNOP00000104409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,027,375 - 113,438,566 (+)	Ensembl

RefSeq Acc Id:

XM_017602364 ⟹ XP_017457853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI
mRatBN7.2	X	108,231,796 - 108,641,768 (+)	NCBI
Rnor_6.0	X	115,908,999 - 116,402,406 (+)	NCBI

Sequence:

show sequence

GAGAGAGAAACAGTGGTTGGCGAAAGCACCTCTCACCTCCCCCAGCCCCTGGCCAAAGCCTAGC
TGGCGGTCGCCTCACGGCAGAGGCGGGCGGGGCGGGGAAGGCGGGCAGGGGGGAGGGCAAGCAG
GAGGACGGGGCAGCCTGCAGGGGCAGCCGCTCCTGCTCTGTAGCTCGGTGGCCAGGGGTGGAAA
GAAGCCGCAAGCCGCAGCCGCAGCCCCAAGTCAGCCCCCGCTGCCCCGTCCCACCGTCTCATCT
CTCCCCCCTCGGCAGTTTTACTGGGACCCAGCAACTCTAAAATGCAGCTTTCTATGCAAGAAAG
ACCTATGTGATAATTAAGAGACTCCTTCCTTAAGAATGATGGTTTCTGCAGTGCTGGGAGTGTG
GACTATTCGAAGTAGACTAATTCAAGAAACATGTTTGATCTGAAAAGCCTCATTAATCACTAAT
TATAAGAATTTCACCATGGTATAACTCTGCCTATTTACACATGGAGAACAATACGTGAGAGAGA
AGAGTAGAGTGTTGTATGCCTTTGGAAGGGAGCCATAATGTCCCAAGAACAAGGTCACCTTGAT
GTATACCTATGCTTCCATCTCCACGATAGACAAATGTTACCTACCTAGACCTGACCTGCATGGA
ATGCTGTCAAAGGAAGTCGTGGAGACTTCGAAAAAAACCAACACACCATATACTACTTTGGGGC
TGCTTTCAGAGATACTGAAGGAAATGTTATATAATAAACAGTAATGCACTGTGTTGCCTTTCAA
GAATCTGAAAAGGTGAAATTTGAATTATAAAACACAGATGCTACAACTATGGACCTAGAGAAAT
TATTGCTAACATTTATGGGGCCTTTGCCACCAACATGAAGCTGTGCCAGTCTACTTTCATTTCA
GGCAACCATCAAAATCTATGAGCTCCTTGAAGTGAAGTGGAGGTTGATGAAGACATCCCATTTA
GGACTGATGCCCCAAGGTGATGTGTGTCTTCGGAATGTGTAATATACTGACATTTTCCGTGAAG
AAGCAGTGATGTATAGAAGATAACATTTTGGTGGCATCTCTTCAGCTCAACTCTTATTGATGTT
GAACAGGTGTTTTCTGCTTGTGCACAACACTGTCCTTTCAGATCTCAAACCAAACCACTGCCTG
TCCCTTGGTCCTGGGAACTGGCACTGAATTTCTATTCAGTTCTACATAAGTGCAAGAGACACAA
TGGAGAAGTGTACAGAATCTCCACCAAACTTAAATGCAGAGACTTCCTTTTTGAGAGGAGGCAA
TCTGATTCAGCAGCCACAAGTGCAACATCCAGCTGATGAGAAACCTCCTTTAACGGGGCAAGTT
GTACCTCCCCTGAATAGCCCGGTAATGTCTGGGCCTTACTCAGGTGACCATCTCCCTCAATTTC
ATGGTAACCCAGCCAGTGTCAGAGGATTTTTTGCTCAGGTGACTGCCTATTTGACAACTCTGGA
CATTTCTAATCCTGCAGATGATGCCAGAGTCAAGCACTTTTTTGACTACCTGTCACAGCAGATG
CAAAATTGTGATGTCCTATCTGAGTCCTCACAGAGAAATCTACTGAAACAATATGAGAACTTTG
TTCTTGAGTTCCAGAAGTCATTTGGTGAACCAATGATACAAGAAACAACTCCTCCAATGAATGC
TATGGTTGACAAAGGTGACATCTCTCCGCAGGATGCTACTACTTCCCAAGTTCATGCTCCAAAT
TTGAGTTATAGTGAGACCGATCAGAGAGACCAGCTCCAAGCTGACTCTACTCATGATGAAGAAA
TCACAGATATAATGGACAACCTACCAGATTTGATCACTCAATGCATTCAGCTGGACAAAAAACA
CAAAGACAGGCCAGAACTCCTACAGTCAGAAAGTCATGTTCCAATGGTTGCTTCCCCAAATTGT
AGCCAGTCCTTTCTCAGCCCCATACGGCCACTACCAAAGGATGGGCTTAAACCAATGCAGGGAG
CCCACCTGCCTGTAACTCCGGCCAAAAGAGCCCGCCAGCAAGAAACTCAGTTATGTCTCTACTG
TAATCAGGCTGGTCACTTCACAAGAGATTGCCTTGCTAAACGTTCTAGAACTCCAGCAAGGAAA
AAAATGTAGCTAGCTTACTAGTAAGAGGAGGATAAGAAATCACTTTGTAAATACATACCCTTTC
ACCATTGGCCTTAGTGATTTATAAACTTTTACAAACTTCAAAATACAAAGTTGCTGTGGCATCA
CATTGGAAAACAGCCAAGAACATTTACATCCCCAGGAATTTGAATAAGCAGACCTTGTTGGTTG
AAAGGTAGCCTCTCCCTAAACTTATTCTAACAATGATGAAGATAATTACCAGAAACTTCATTAG
TTGGGACCAATCACTTTAAGAGTTCTAAAAGTTTGCAGACGCGACTCTCTACAGTCTGAGCTAA
AAAAAAAATCAACCAAACAAAAATCCCTTAAGATGTACTGAGATTCACATCCCTACCAAAGGAT
GCAATCATCGTGGTTGATTCTATTGGACCAAATCCCATAGCTGATGTGCCTAGGACTGAGCCCA
AAGCTTTTATCCTCCTTTTTATTAATCTACTTCTTAGTGACTTGTTTGTTCAGGTCTTTTGTTT
GCAATCACAGTGGCATCACCATGTCCAACAATATCCTTGTCATCGAGGGACCAGAATCTGTATT
CTCTTCTAGCTATTAATTAGACTCTAGTGCCAACACATGCCAATCATCCTGGAATGAAATCTCT
GACACCTTTTATACAGCTATATATTTTGTTGCCATCAGAAGACTCCTGCTTACTCAACATGCTG
AACTTCTCGGCTATTGCTAAACCAAATTATATGGTCATTGGAACTGAATATTGATTAATTATTG
GCAACTTTCTTTGACAAATGTCCTCTCTGGCAGTTAACATACTTTGAGCCTGCCAATCCAAGTT
TAGTCATATCTACACTAATGTTCCTATTTTAGATTTGGATGTATATATGGCTAAGTCTAATGGT
TTAAGATAAATGACCAAGTAAGGTATTTAAAGACATTTGTTTGAAGTATCTATCATAGTTACTG
TAACAGCAGCATGTTCTTGCTGCCCGAACAGAGACAAATCTGAACTAAGGACTGGCTTTCCAGC
CTGCCATAGTTGGTGACTTCCTAGGCCTCACCACTTAATAATCACTGCCAGTTGCTACCAAACT
ATACTCCTCTGGACCACCTTTGGCTATTGTTATCTAATTGAGGACCTTGGGAAGCAATGGGATG
ACATAGAACTTTCAGAACCAACTCATCTAAAAACTCGTGTGCATAGACATTAACACCATCTGTG
CACAAAATCTCAAGAACTGGGGTGTTCTTTTGCTTGTCTTGTACTCTTGGCACACATCAGCTCT
ATGTATAAATAGATGATGTAGGTGATGCTTCTGCAAAAAAAAAAAAAGGAATGATGTGCTAGAA
AAGCACAACTTCTTAGAAATGTTAACAACTCCTGTTGCTCAGTATTTGTTGGTAATTACCAGTT
CTTTGTTCACTGCTTCTTGGTGCTGGTGTATTTCCCCATAATGGATTTCCTGAAATCAGTCATT
GCATAGTCCTTAATAGCCACTCAGAACATGAAGTGCCACTGCACTTTGGTCTTGTTCCCTGAGA
ATTGTGCTTCGCTTTCAATACTTAATCCCAGATGGGACTCTACTGTTCTTCTCTTATAGCACCA
AGAAATATCTCTTCATCCATCAGTGCCTCACTAACCACTGTGCCGATCCATACTTACATTCACA
AGCAGTTTGTTCCTTTGTCAGTAGCTTGCTATGTATTCACAGTACTTCATAAACGACCATAATG
AGATGTGAATGCACATGTCCCGACTGTGCTAAGAAATCCCCACTGCATTACTGGGATTGTACGA
GAAACTTTACCAAGTGGATTTATTTGAATGTTGAGTGAGTCTAGGATTTTCAGAAAGAATCCTC
ATCCATCTCTTCTAATTCTATAATAAAGGACTAATCCAAATGA

hide sequence

RefSeq Acc Id:

XM_039100321 ⟹ XP_038956249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI
mRatBN7.2	X	108,231,796 - 108,641,768 (+)	NCBI

RefSeq Acc Id:

XM_039100323 ⟹ XP_038956251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI
mRatBN7.2	X	108,231,796 - 108,641,768 (+)	NCBI

RefSeq Acc Id:

XM_039100324 ⟹ XP_038956252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,414,825 - 113,438,382 (+)	NCBI
mRatBN7.2	X	108,617,168 - 108,641,768 (+)	NCBI

RefSeq Acc Id:

XM_063280473 ⟹ XP_063136543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280474 ⟹ XP_063136544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280475 ⟹ XP_063136545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280476 ⟹ XP_063136546

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280477 ⟹ XP_063136547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280478 ⟹ XP_063136548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280479 ⟹ XP_063136549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280481 ⟹ XP_063136551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,414,825 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280482 ⟹ XP_063136552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280483 ⟹ XP_063136553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280484 ⟹ XP_063136554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,368,837 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280485 ⟹ XP_063136555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280486 ⟹ XP_063136556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280487 ⟹ XP_063136557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280488 ⟹ XP_063136558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,368,837 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280489 ⟹ XP_063136559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280490 ⟹ XP_063136560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280491 ⟹ XP_063136561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280492 ⟹ XP_063136562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280493 ⟹ XP_063136563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,340,909 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280494 ⟹ XP_063136564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280495 ⟹ XP_063136565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280496 ⟹ XP_063136566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280497 ⟹ XP_063136567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280498 ⟹ XP_063136568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280499 ⟹ XP_063136569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,368,837 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280500 ⟹ XP_063136570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,028,444 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280501 ⟹ XP_063136571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,027,697 - 113,438,382 (+)	NCBI

RefSeq Acc Id:

XM_063280502 ⟹ XP_063136572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,368,837 - 113,438,382 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001420066	(Get FASTA)	NCBI Sequence Viewer
	NP_001420067	(Get FASTA)	NCBI Sequence Viewer
	NP_001420068	(Get FASTA)	NCBI Sequence Viewer
	NP_001420069	(Get FASTA)	NCBI Sequence Viewer
	NP_001420070	(Get FASTA)	NCBI Sequence Viewer
	NP_001420071	(Get FASTA)	NCBI Sequence Viewer
	NP_001420072	(Get FASTA)	NCBI Sequence Viewer
	NP_001420074	(Get FASTA)	NCBI Sequence Viewer
	NP_001420075	(Get FASTA)	NCBI Sequence Viewer
	NP_001420076	(Get FASTA)	NCBI Sequence Viewer
	XP_017457853	(Get FASTA)	NCBI Sequence Viewer
	XP_038956249	(Get FASTA)	NCBI Sequence Viewer
	XP_038956251	(Get FASTA)	NCBI Sequence Viewer
	XP_038956252	(Get FASTA)	NCBI Sequence Viewer
	XP_063136543	(Get FASTA)	NCBI Sequence Viewer
	XP_063136544	(Get FASTA)	NCBI Sequence Viewer
	XP_063136545	(Get FASTA)	NCBI Sequence Viewer
	XP_063136546	(Get FASTA)	NCBI Sequence Viewer
	XP_063136547	(Get FASTA)	NCBI Sequence Viewer
	XP_063136548	(Get FASTA)	NCBI Sequence Viewer
	XP_063136549	(Get FASTA)	NCBI Sequence Viewer
	XP_063136551	(Get FASTA)	NCBI Sequence Viewer
	XP_063136552	(Get FASTA)	NCBI Sequence Viewer
	XP_063136553	(Get FASTA)	NCBI Sequence Viewer
	XP_063136554	(Get FASTA)	NCBI Sequence Viewer
	XP_063136555	(Get FASTA)	NCBI Sequence Viewer
	XP_063136556	(Get FASTA)	NCBI Sequence Viewer
	XP_063136557	(Get FASTA)	NCBI Sequence Viewer
	XP_063136558	(Get FASTA)	NCBI Sequence Viewer
	XP_063136559	(Get FASTA)	NCBI Sequence Viewer
	XP_063136560	(Get FASTA)	NCBI Sequence Viewer
	XP_063136561	(Get FASTA)	NCBI Sequence Viewer
	XP_063136562	(Get FASTA)	NCBI Sequence Viewer
	XP_063136563	(Get FASTA)	NCBI Sequence Viewer
	XP_063136564	(Get FASTA)	NCBI Sequence Viewer
	XP_063136565	(Get FASTA)	NCBI Sequence Viewer
	XP_063136566	(Get FASTA)	NCBI Sequence Viewer
	XP_063136567	(Get FASTA)	NCBI Sequence Viewer
	XP_063136568	(Get FASTA)	NCBI Sequence Viewer
	XP_063136569	(Get FASTA)	NCBI Sequence Viewer
	XP_063136570	(Get FASTA)	NCBI Sequence Viewer
	XP_063136571	(Get FASTA)	NCBI Sequence Viewer
	XP_063136572	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061685.1
	ENSRNOP00000089653
	ENSRNOP00000089653.1
	ENSRNOP00000100579
	ENSRNOP00000100579.1
	ENSRNOP00000102618
	ENSRNOP00000102618.1
	ENSRNOP00000102970
	ENSRNOP00000102970.1
	ENSRNOP00000104409
	ENSRNOP00000104409.1
	ENSRNOP00000106063
	ENSRNOP00000106063.1
	ENSRNOP00000106381
	ENSRNOP00000106381.1
	ENSRNOP00000107459.1
	ENSRNOP00000108207
	ENSRNOP00000108207.1

RefSeq Acc Id:

XP_017457853 ⟸ XM_017602364

- Sequence:

show sequence

MEKCTESPPNLNAETSFLRGGNLIQQPQVQHPADEKPPLTGQVVPPLNSPVMSGPYSGDHLPQF
HGNPASVRGFFAQVTAYLTTLDISNPADDARVKHFFDYLSQQMQNCDVLSESSQRNLLKQYENF
VLEFQKSFGEPMIQETTPPMNAMVDKGDISPQDATTSQVHAPNLSYSETDQRDQLQADSTHDEE
ITDIMDNLPDLITQCIQLDKKHKDRPELLQSESHVPMVASPNCSQSFLSPIRPLPKDGLKPMQG
AHLPVTPAKRARQQETQLCLYCNQAGHFTRDCLAKRSRTPARKKM

hide sequence

Ensembl Acc Id:

ENSRNOP00000061685 ⟸ ENSRNOT00000050854

RefSeq Acc Id:	XP_038956249 ⟸ XM_039100321
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

XP_038956251 ⟸ XM_039100323

RefSeq Acc Id:	XP_038956252 ⟸ XM_039100324
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089653 ⟸ ENSRNOT00000116205

RefSeq Acc Id:

XP_063136544 ⟸ XM_063280474

RefSeq Acc Id:

XP_063136553 ⟸ XM_063280483

RefSeq Acc Id:	XP_063136556 ⟸ XM_063280486
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

XP_063136559 ⟸ XM_063280489

RefSeq Acc Id:	XP_063136555 ⟸ XM_063280485
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136552 ⟸ XM_063280482
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136564 ⟸ XM_063280494
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

XP_063136571 ⟸ XM_063280501

RefSeq Acc Id:	XP_063136560 ⟸ XM_063280490
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136557 ⟸ XM_063280487
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136548 ⟸ XM_063280478
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136568 ⟸ XM_063280498
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136546 ⟸ XM_063280476
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136549 ⟸ XM_063280479
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136567 ⟸ XM_063280497
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

XP_063136543 ⟸ XM_063280473

RefSeq Acc Id:

XP_063136545 ⟸ XM_063280475

RefSeq Acc Id:

XP_063136547 ⟸ XM_063280477

RefSeq Acc Id:	XP_063136561 ⟸ XM_063280491
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136565 ⟸ XM_063280495
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136562 ⟸ XM_063280492
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136566 ⟸ XM_063280496
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136570 ⟸ XM_063280500
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136563 ⟸ XM_063280493
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136554 ⟸ XM_063280484
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136558 ⟸ XM_063280488
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136569 ⟸ XM_063280499
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136572 ⟸ XM_063280502
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136551 ⟸ XM_063280481
- UniProtKB:	D4A5N6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102970 ⟸ ENSRNOT00000126880

Ensembl Acc Id:

ENSRNOP00000100579 ⟸ ENSRNOT00000144598

Ensembl Acc Id:

ENSRNOP00000108207 ⟸ ENSRNOT00000159588

Ensembl Acc Id:

ENSRNOP00000102618 ⟸ ENSRNOT00000137479

Ensembl Acc Id:

ENSRNOP00000107459 ⟸ ENSRNOT00000123397

Ensembl Acc Id:

ENSRNOP00000106381 ⟸ ENSRNOT00000124871

Ensembl Acc Id:

ENSRNOP00000106063 ⟸ ENSRNOT00000153191

Ensembl Acc Id:

ENSRNOP00000104409 ⟸ ENSRNOT00000170785

Protein Domains

CCHC-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A5N6-F1-model_v2	AlphaFold	D4A5N6	1-301	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1588188	AgrOrtholog
BioCyc Gene	G2FUF-1482	BioCyc
Ensembl Genes	ENSRNOG00000031638	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050854.5	UniProtKB/TrEMBL
	ENSRNOT00000116205	ENTREZGENE
	ENSRNOT00000116205.2	UniProtKB/TrEMBL
	ENSRNOT00000123397.1	UniProtKB/TrEMBL
	ENSRNOT00000124871	ENTREZGENE
	ENSRNOT00000124871.1	UniProtKB/TrEMBL
	ENSRNOT00000126880	ENTREZGENE
	ENSRNOT00000126880.1	UniProtKB/TrEMBL
	ENSRNOT00000137479	ENTREZGENE
	ENSRNOT00000137479.1	UniProtKB/TrEMBL
	ENSRNOT00000144598	ENTREZGENE
	ENSRNOT00000144598.1	UniProtKB/TrEMBL
	ENSRNOT00000153191	ENTREZGENE
	ENSRNOT00000153191.1	UniProtKB/TrEMBL
	ENSRNOT00000159588	ENTREZGENE
	ENSRNOT00000159588.1	UniProtKB/TrEMBL
	ENSRNOT00000170785	ENTREZGENE
	ENSRNOT00000170785.1	UniProtKB/TrEMBL
Gene3D-CATH	Zinc finger, CCHC-type	UniProtKB/TrEMBL
InterPro	Znf_CCHC	UniProtKB/TrEMBL
	Znf_CCHC_sf	UniProtKB/TrEMBL
KEGG Report	rno:680778	UniProtKB/TrEMBL
NCBI Gene	680778	ENTREZGENE
PhenoGen	Rtl4	PhenoGen
PROSITE	ZF_CCHC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031638	RatGTEx
Superfamily-SCOP	SSF57756	UniProtKB/TrEMBL
UniProt	D4A5N6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-29	Rtl4	retrotransposon Gag like 4	Zcchc16	zinc finger CCHC-type containing 16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-17	Zcchc16	zinc finger CCHC-type containing 16	Zcchc16	zinc finger, CCHC domain containing 16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-05-24	Zcchc16	zinc finger, CCHC domain containing 16	LOC100363897	hypothetical protein LOC100363897	Data merged from RGD:2322159	1643240	APPROVED
2010-05-06	LOC100363897	hypothetical protein LOC100363897			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-05	Zcchc16	zinc finger, CCHC domain containing 16	LOC680778	similar to zinc finger, CCHC domain containing 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC680778	similar to zinc finger, CCHC domain containing 5	LOC681883	similar to zinc finger, CCHC domain containing 5	Data merged from RGD:1590483	1643240	APPROVED
2006-11-20	LOC681883	similar to zinc finger, CCHC domain containing 5			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC680778	similar to zinc finger, CCHC domain containing 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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