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Gene: Ripor3 (RIPOR family member 3) Rattus norvegicus

Analyze

Symbol:

Ripor3

Name:

RIPOR family member 3

RGD ID:

1587669

Description:

Orthologous to human RIPOR3 (RIPOR family member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam65c; family with sequence similarity 65, member C; hypothetical protein LOC688499; LOC296392; LOC688499; LOC688510; similar to C27H2.3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RIPOR3 (RIPOR family member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ripor3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ripor3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RIPOR3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RIPOR3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ripor3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RIPOR3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RIPOR3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ripor3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ripor3 (RIPOR family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RIPOR3 (RIPOR family member 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RIPOR3 (RIPOR family member 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ripor3 (RIPOR family member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ripor3 (RIPOR family member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y37A1A.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y37A1A.4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	ripor3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ripor3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ripor3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ripor3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	177,106,436 - 177,179,423 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	177,106,892 - 177,179,095 (-)	Ensembl				GRCr8
mRatBN7.2	3	156,687,253 - 156,760,524 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	156,687,517 - 156,715,061 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	164,714,655 - 164,792,224 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	164,715,913 - 164,728,338 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	170,866,085 - 170,939,362 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	159,119,965 - 159,147,922 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	155,261,929 - 155,336,635 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

copper atom (EXP)

copper(0) (EXP)

dexamethasone (ISO)

dioxygen (ISO)

endosulfan (EXP)

glycidol (EXP)

leflunomide (ISO)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

niclosamide (ISO)

okadaic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

potassium dichromate (ISO)

rac-lactic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ripor3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	177,106,436 - 177,179,423 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	177,106,892 - 177,179,095 (-)	Ensembl				GRCr8
mRatBN7.2	3	156,687,253 - 156,760,524 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	156,687,517 - 156,715,061 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	164,714,655 - 164,792,224 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	164,715,913 - 164,728,338 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	170,866,085 - 170,939,362 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	159,119,965 - 159,147,922 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	155,261,929 - 155,336,635 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

RIPOR3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	50,586,108 - 50,691,542 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	50,585,180 - 50,692,021 (-)	Ensembl			hg38	GRCh38
GRCh37	20	49,202,645 - 49,308,079 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	48,636,052 - 48,686,833 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	48,646,921 - 48,686,833	NCBI
Celera	20	45,906,933 - 45,957,690 (-)	NCBI		Celera
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	45,951,407 - 46,002,066 (-)	NCBI		HuRef
CHM1_1	20	49,107,779 - 49,158,469 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	52,355,766 - 52,462,307 (-)	NCBI		T2T-CHM13v2.0

Ripor3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	167,822,081 - 167,892,809 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	167,822,084 - 167,852,538 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	167,980,161 - 168,050,889 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	167,980,164 - 168,010,618 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	167,806,286 - 167,836,093 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	167,671,987 - 167,701,823 (-)	NCBI		MGSCv36	mm8
Celera	2	173,922,909 - 173,948,637 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	88.07	NCBI

Ripor3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	7,686,577 - 7,752,309 (+)	Ensembl
ChiLan1.0	NW_004955445	7,685,898 - 7,753,370 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIPOR3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	56,335,085 - 56,442,525 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	56,323,808 - 56,435,713 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	46,929,641 - 47,037,795 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	48,058,773 - 48,164,519 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	48,058,773 - 48,164,971 (-)	Ensembl			panPan2	panpan1.1

RIPOR3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	37,006,678 - 37,080,291 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	37,007,707 - 37,065,965 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	36,247,403 - 36,321,065 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	37,714,157 - 37,787,920 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	37,714,239 - 37,787,563 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	36,950,526 - 37,024,160 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	37,084,176 - 37,157,847 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	37,628,460 - 37,702,188 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ripor3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	188,544,273 - 188,610,877 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	4,034,546 - 4,063,467 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	4,029,925 - 4,064,434 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIPOR3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	52,088,053 - 52,162,554 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	52,088,049 - 52,163,964 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	58,476,078 - 58,550,973 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIPOR3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	13,282,704 - 13,384,297 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	13,339,843 - 13,383,203 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	6,327 - 32,534 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ripor3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	4,996,527 - 5,068,549 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	4,996,075 - 5,069,614 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ripor3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	150,001,594 - 150,028,870 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	48
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000035463
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

RH131447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	156,687,584 - 156,687,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	164,714,723 - 164,714,903	NCBI	Rnor6.0
Rnor_5.0	3	170,866,153 - 170,866,333	UniSTS	Rnor5.0
RGSC_v3.4	3	159,119,243 - 159,119,423	UniSTS	RGSC3.4
Celera	3	155,263,947 - 155,264,127	UniSTS
RH 3.4 Map	3	1478.0	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	85	59	6	349	185	11	138	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003753833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035463 ⟹ ENSRNOP00000037329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	177,106,892 - 177,179,095 (-)	Ensembl
mRatBN7.2 Ensembl	3	156,687,517 - 156,715,061 (-)	Ensembl
Rnor_6.0 Ensembl	3	164,715,913 - 164,728,338 (-)	Ensembl

RefSeq Acc Id:

XM_006235650 ⟹ XP_006235712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,106,436 - 177,179,422 (-)	NCBI
mRatBN7.2	3	156,687,253 - 156,760,523 (-)	NCBI
Rnor_6.0	3	164,714,655 - 164,792,219 (-)	NCBI
Rnor_5.0	3	170,866,085 - 170,939,362 (-)	NCBI

Sequence:

show sequence

GGAACTCCTGCTGGGAATCCAGGCCAGCTCCGACCAGACCGTGGCGAGAACTGGAAAGGGGCAA
GGGCCGGGAAGAGGGAAAGGCAGAAGTTGGAGGGAGGGAGCCCGACCCTGCCTGCGAGTGATTA
GCCGCAGCCCCGCGCAGCGCAGTAAACAGAAACTTGCAGGCGTCCCCTCCGCTCCATCCCAGGC
AGGCATCTAATCCCGAGTGATTAATCCGAGTCGTCGGGGGCCAAGAGCCTTGCGTGGACTTGGA
ATCAGCCGAGATGGGAGTAGGAAGTGGCCTCCTGCAGCTACGGCAGGGGAGTGTCCGAGCAGCG
CAGTGACACGACGGGCCAGCGCGGCATCCGGGGGCGCAGGGCCGGGGCTGGAGGCTTCCGGGAA
CCCCGGTCCCTCGGCCGCTGAACCCTGACACCCGTCAGATAAGCTCTATCTCAGAGGCCAGAGC
CGGGAACAGCCGGATACAGGGGCCACCGAGTGCATTCCCAGAACCAGCATCCGCGGTGGTCAGA
GGACTGCGGGGAGCTCCGCCAGCCCGCGGTCGGTGACAACCAGCCAGCGCCGGGCAGCAGCGCA
GCTCGGTCCCGGAGGTCCAGACCCGCTCCACGGCGGCAGCCATGTCTGTGCGACTGCGCTTCCT
GTCTCCCGGGGAAGCCGGGGCTGTGGGGACCGTGGGCCGCAGCGCCTCCTTCGCTGGCTTCAGC
AGTGCACAGAGCCGAAGGGTCTCAAAGTCCATCAACAGGAACTCTGTGCGGTCCCGGCTGCCAG
CCAAGTCCTCCAAGGCTTATGGAACACTGCGCAAGGGTTCGCTGTGCCTGGACCCCCGGCCACA
GCAAGTGAAGAAAATCTTTGATGCTTTGAAGAGAGGCCTCAGGGAGCACCTGTGTGAGCAGCAG
GCTGAACTGGACTACCTGTGCAGATGCCACACGGACACCCAGAGGAGCTCCAGGCTGGCCTTCT
ACTATGACCTGGACAAGCAAATGCGCATGGTGGAGAGACACATCCGGAAGGTGGAGTTCCACAT
CAGCAAGGTCGATGAACTCTATGAAGGCTACTGTATCCAGTGGCGGCTTCGAGATGGAGCCTCC
AACATGCAGCGTGCCTTCAGCAACAGCACCCAGAGCCGTGCCTCCCGGGAGAGCCTGCAGGAGC
TGGGCCGCAGCCTGCAGGAGTGCCTGGAGGACATGTGCCTCATAGAGGGGACCTTGGAAGGTCA
CCTGGGCGAGTTCCATGTCAAGATGAAAGGCTTGGTGGGCTATGCACGCCTCTGTCCCGGAGAT
CAGTATGAGGTTCTCATGCGCCTGGGCCGTCAGCGATGGCGGCTGAAGGGCCGGATAGAACCAG
ATGACAGCCAGACCTGGGACGAGGAGGAGAGGGTCTTTGTGCCCACGGTGCATGAGAACCTGGA
GATCAAGGTGACGGAGCTTCGAGGCCTGGGCTCCATGGTGGTGGGTGCGGTGACATGTGACGTC
GCAGACTTCTTCACAGCCCGGCCCCAGCTTGTGGTGGTGGACATCACAGAGTTGGGCACCATCA
AGCTGCAGCTGGAGCTGCTGTGGAACCCCTTGGACTCTGAGTGCCGCCTGGTGTCACCCAGCCC
CACTGGCAGGTTCTCCGTGGGCAGCAGGAAGGGCTCCCTGTACACATGGACGCCACCCAGCACC
CCCAGCTTCCGGGACAAATATTACCTGTCTGTCCTTCAGCAACCCATGCAGCAGGCCTTGCTGC
TAGGTGGGCCAAGGGCCACCTCCATCCTCGGCTACCTGTCTGACAGTGAGCTCCAGGGTCCCCG
CCTGCGAAGCCGGAGCCAGGAGTTACTGGAGATGGACTCCTTCAGCTCCGAGGACCCCAGAGAC
ACTGAGACCAGCACTTCAGCATCCACCTCAGATGTGGGCTTCCTGCCCATGCCTGTGGCTCCCA
CAGCCTGCATAGAAGAGGAGACCAGGGAGGAGCCTCCACCTCTGGGTCTGCTGCCGGGCCTGAC
TCACCCAGCCGGGGGTGTGCTTGTAGAACAGCCTGGTTGGAGGGACTTGAGAGGAGAGAGGCTG
GACCTACTGTTGGACGACCCAATCCACAGCCCCACCGTGCCACGGAGCCGGAAGGGCCAGGAGG
ATGGAGGTGCGGGGGACGGAGTGGAGGGGCCTGTGCAGGAGGTCCTGGATCTGCTGCGGTCTGC
GGACCCTGCGCAGCCCCAGCTCAGGGAGCTGGAGTACCAAGTCCTTGGCCTCCGGGAGCGGCTG
AAGCCCCGAGGGGTGCAGCCGGAACCCGTGTCAGCGCAGAGTCTCATGGACTGTATACTTGAGA
GCTTCGCCTTTCTGAATGCCGACCTTGCCAGTGACGAACTGTCTCTGTTTGGGGGCTCCCAGGC
TCTTGAGAGGGACAGCCCCCCACCTCCACGGCCATCACTGAAGGTCTCGCCTAGCGAACTCACA
GCCGGTACCCCTGAGCTGGACACACTGCTTACTGTCCACCTTCAAGTCTGCAAAGCCTTGCTTC
AGAAACTGGCCTCCCCTAATTTGTCAAGGATGGTGCAGGATTGCCTCCTGGAGGAAGCGGTGCA
GCAAAGACAGGTTCTGGAAGTGCTTTCAGACCTTGACCTTGAGCAGGTCAGCAAGGCCAAGTCG
GTTGAAGAGATCATCCCACAGGCATCTCAAAGGAAGGGTGGCCTGGCACTGTGGCAGGGATGCA
CACAGCCTGGTGGAGTCCTGGCCTGCCCTGCCTCCACACTCCTGAGCCAGCTCAAGAAGACATT
CCTACATCGCGTCCGAGGAAAGTACCCGGGCCAGCTGGAAATAGTGTGTCGCAGGCTCCTGGAG
CAGGTGCTGGGCTGTGGCGGGCTATTTGTCACAGCAGGGCTCCAGGACGAGCAGGTGGTCACCT
GGTTCCAGTTCCACAGCTACCTGCAGCGGCAGAACATCTCTGACTTGGAGAAACACCTCACTCA
GCTCACCAAGGAAGTTACTCTCATTGAGGAACTGAACTGTGCGGGCCCAGCCAAGGCCCTGAGG
AAGCTGCACGGGAAGCGTCTAAGCCAGCTGCAGCCATTGCCCCAGACGCTTCAAGCCTGGGCCC
GGCTGCAGCTGGACGGACCCCCGAGGCTGTGCAGGGCTGCCAGAATGCGACTGGCCAGCGCGGC
CAGGAACAAGCGCTTCCGGGAAAAGGCCCTGCTATACTACACCAATGCCTTAAATGACAGTGAC
TCCAAGCTCCAGCAGGCGGCGTGCATGGCTCTGCAGCAGCTCGGGGGCGTTGAAAGCATTGAAC
AGATTGTCAGTCTATGTCAGTCTGACCTGGAGGCCGTGCGAGCCGCAGCACGGGAAGCAACACT
GTCGTTTGGTGAGAAAGGCCGCCTAGCTTTTGAGAAGATGGACAAACTACACGCAGAACAAGAA
GCCTTCTGTCAGGAAGCGGATGTTGAGATCACAATTTTTTAAGAAGCCGTGCTCGATGAGCTCA
AATCTGGCCTCTTTCTTCCTTTCATGCTGCCTGGCCTCCACAGTGCCCAGGATTTGGATGGAGC
ATCCAAGCCACTCCCTCCCAAGTGTGAGCTGGTCAGGACAGTTACCTGAGACTGGGTCCTCAGC
GCAGGGATAACAGTCATGTACTCACAGAGCAGGCACAAGTGGTATGTGGGACCTCTAAGGCTGT
GGCCTCCGCCAAATGCTGTTTTTGCCATCCTGGGGTACAGTGCCAGGCACTGTCTTGAGGATCG
AGGATCCAGGGCAAGGTGACAGACATGCATGGGGTATGAGCTCCCTGCATACCCTCAGCTGGGA
CAGAACTGGTCTGACAAACAGGGCTGTGGCAGCTTCCCAGTAGGCAGGTCCACTTCCATGGCAG
CCTGGGCCCTTGGATGAATGCTCAGACCTGAGGAGGTTTTCACTGCAGCGGCTGGGGAGACTCA
TGATGGGTTAGATACCCACGAGGGGTTTCCTACTTAAGTGAATAGAGCACTCCACGCTGGCGTC
TGAGATGCCCACGAGGGGGTTCTCAGGGCTGACATAGTCATCTCTCACTTAGGTCCCTGTGGAC
CATGTGTGCTGACTTGGTATTTATTTGCCTTGTTCATGTCCATTCTCTGAAATCTCAATTACAA
ACTCTGGCGTATGGCCACCTTACTGCCCCAAGTAGAGAATGTTGTATCCGTAGAGCCTTAACAT
GGGAGGGGCGGCAGGCCCACTGGGGATCCTTCCTATATTCTTCATGCCTGACTCATGGTAGGCT
GCCCTCTTCTGGGGGCATTTGGGGACACCCCAGGCCTTTGTCAAGCCTTCACTGCACTGGATTT
ATCCCAGTCACTATTAGTCAGCTTTCCACACTGGTAACTCTCAGAGTCATTTTCATACCTGAAG
CCTTTGGTTGTGAGAGCAGCCACAGCACTCACAGTTCTGTGGCCAGGACCCAAGCGGGGACCAC
CTGATGCACAAGCCACCTGTGAACCCGAAGGGTACAGAGCTGTGCTTTCTGCAGTGACATCTTC
CACTCCACAAGTCTCAAGTGACTCTGAACTGGAAGTCAGTCACCTTGGGGCCTTACATATTTAG
TTTTATACATGAACGGAAGGTCACACCACTTTTGGGTCTCATTTTCATGTTTAAGTCAAGCATA
CATCAGATGAGGCTTATGGATGTCCTGAGATTGAAGACCATGAAATCTGACAGGCAGCTGGCCA
AGGGGAGGTCTGGATGCTGGGCCAGGGATTCCAATGACCTGTGAGTCTCAAGGTAGCCTGGGCT
GCCCAAGGGGAGGTCCTGAAAGGACAGTGTAGAGAACCCACATCTCAGCAGTCACATGACGCAC
AGTGTGCTTACCCTGTAGGCCTCACGCTGGCAGGGGTAGACAAATGACTGCCCACCCTGGCCCA
AGTCTGTGAATAAAGAAAATGAAAGCA

hide sequence

RefSeq Acc Id:

XM_039106725 ⟹ XP_038962653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,106,436 - 177,130,084 (-)	NCBI
mRatBN7.2	3	156,687,253 - 156,709,631 (-)	NCBI

RefSeq Acc Id:

XM_039106726 ⟹ XP_038962654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	177,107,834 - 177,179,423 (-)	NCBI
mRatBN7.2	3	156,688,906 - 156,760,524 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_006235712	(Get FASTA)	NCBI Sequence Viewer
	XP_038962653	(Get FASTA)	NCBI Sequence Viewer
	XP_038962654	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037329
	ENSRNOP00000037329.6

RefSeq Acc Id:	XP_006235712 ⟸ XM_006235650
- Peptide Label:	isoform X1
- UniProtKB:	D3ZX40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVRLRFLSPGEAGAVGTVGRSASFAGFSSAQSRRVSKSINRNSVRSRLPAKSSKAYGTLRKGS LCLDPRPQQVKKIFDALKRGLREHLCEQQAELDYLCRCHTDTQRSSRLAFYYDLDKQMRMVERH IRKVEFHISKVDELYEGYCIQWRLRDGASNMQRAFSNSTQSRASRESLQELGRSLQECLEDMCL IEGTLEGHLGEFHVKMKGLVGYARLCPGDQYEVLMRLGRQRWRLKGRIEPDDSQTWDEEERVFV PTVHENLEIKVTELRGLGSMVVGAVTCDVADFFTARPQLVVVDITELGTIKLQLELLWNPLDSE CRLVSPSPTGRFSVGSRKGSLYTWTPPSTPSFRDKYYLSVLQQPMQQALLLGGPRATSILGYLS DSELQGPRLRSRSQELLEMDSFSSEDPRDTETSTSASTSDVGFLPMPVAPTACIEEETREEPPP LGLLPGLTHPAGGVLVEQPGWRDLRGERLDLLLDDPIHSPTVPRSRKGQEDGGAGDGVEGPVQE VLDLLRSADPAQPQLRELEYQVLGLRERLKPRGVQPEPVSAQSLMDCILESFAFLNADLASDEL SLFGGSQALERDSPPPPRPSLKVSPSELTAGTPELDTLLTVHLQVCKALLQKLASPNLSRMVQD CLLEEAVQQRQVLEVLSDLDLEQVSKAKSVEEIIPQASQRKGGLALWQGCTQPGGVLACPASTL LSQLKKTFLHRVRGKYPGQLEIVCRRLLEQVLGCGGLFVTAGLQDEQVVTWFQFHSYLQRQNIS DLEKHLTQLTKEVTLIEELNCAGPAKALRKLHGKRLSQLQPLPQTLQAWARLQLDGPPRLCRAA RMRLASAARNKRFREKALLYYTNALNDSDSKLQQAACMALQQLGGVESIEQIVSLCQSDLEAVR AAAREATLSFGEKGRLAFEKMDKLHAEQEAFCQEADVEITIF hide sequence

Ensembl Acc Id:

ENSRNOP00000037329 ⟸ ENSRNOT00000035463

RefSeq Acc Id:	XP_038962653 ⟸ XM_039106725
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038962654 ⟸ XM_039106726
- Peptide Label:	isoform X3

Protein Domains

FAM65 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZX40-F1-model_v2	AlphaFold	D3ZX40	1-857	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587669	AgrOrtholog
BioCyc Gene	G2FUF-46712	BioCyc
Ensembl Genes	ENSRNOG00000010791	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035463	ENTREZGENE
	ENSRNOT00000035463.7	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	FAM65	UniProtKB/TrEMBL
	FAM65_N	UniProtKB/TrEMBL
KEGG Report	rno:688510	UniProtKB/TrEMBL
NCBI Gene	688510	ENTREZGENE
PANTHER	PTHR15829	UniProtKB/TrEMBL
	RIPOR FAMILY MEMBER 3	UniProtKB/TrEMBL
Pfam	PL48	UniProtKB/TrEMBL
PhenoGen	Ripor3	PhenoGen
RatGTEx	ENSRNOG00000010791	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	D3ZX40	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-07	Ripor3	RIPOR family member 3	Fam65c	family with sequence similarity 65, member C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Fam65c	family with sequence similarity 65, member C	LOC688499	hypothetical protein LOC688499	Data merged from RGD:1588789	737654	PROVISIONAL
2013-05-24	Fam65c	family with sequence similarity 65, member C	LOC100365557	hypothetical LOC100365557	Data merged from RGD:2318825	1643240	APPROVED
2010-05-05	LOC100365557	hypothetical LOC100365557			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-10-23	Fam65c	family with sequence similarity 65, member C	LOC688510	similar to C27H2.3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC688499	hypothetical protein LOC688499	LOC686361	hypothetical protein LOC686361	Data merged from RGD:1583143	1643240	APPROVED
2008-01-09	LOC688510	similar to C27H2.3	RGD1305210_predicted	similar to chromosome 20 open reading frame 175 (predicted)	Data merged from RGD:1305210	1643240	APPROVED
2006-11-19	LOC688499	hypothetical protein LOC688499			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC688510	similar to C27H2.3			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC686361	hypothetical protein LOC686361			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1305210_predicted	similar to chromosome 20 open reading frame 175 (predicted)	LOC296392_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296392_predicted	similar to chromosome 20 open reading frame 175 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

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InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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