Atg10 (autophagy related 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atg10 (autophagy related 10) Rattus norvegicus
Analyze
Symbol: Atg10
Name: autophagy related 10
RGD ID: 1587624
Description: Predicted to enable Atg12 conjugating enzyme activity. Predicted to be involved in ER overload response; macroautophagy; and protein modification by small protein conjugation. Predicted to be located in cytosol. Orthologous to human ATG10 (autophagy related 10); PARTICIPATES IN autophagy pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: autophagy related 10 homolog; autophagy related 10 homolog (S. cerevisiae); autophagy-related 10; autophagy-related 10 (S. cerevisiae); autophagy-related protein 10; LOC688555; similar to autophagy-related 10-like; ubiquitin-like-conjugating enzyme ATG10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8223,843,695 - 24,133,459 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl223,844,482 - 24,133,368 (-)EnsemblGRCr8
mRatBN7.2222,109,304 - 22,398,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,108,426 - 22,398,233 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx229,158,574 - 29,449,352 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,258,921 - 27,549,707 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0222,075,993 - 22,374,108 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0219,853,546 - 20,152,918 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl219,853,546 - 20,152,884 (-)Ensemblrn6Rnor6.0
Rnor_5.0219,729,784 - 20,026,450 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4221,076,289 - 21,374,627 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera218,236,510 - 18,521,138 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-(tert-butylimino)-5-phenyl-3-(propan-2-yl)-1,3,5-thiadiazinan-4-one  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha,alpha-trehalose  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buprofezin  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
formaldehyde  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
glucose  (ISO)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
irinotecan  (ISO)
lycopene  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
permethrin  (EXP,ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
Sinomenine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc oxide  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. LC3 conjugation system in mammalian autophagy. Tanida I, etal., Int J Biochem Cell Biol. 2004 Dec;36(12):2503-18.
6. Mammalian autophagy: core molecular machinery and signaling regulation. Yang Z and Klionsky DJ, Curr Opin Cell Biol. 2010 Apr;22(2):124-31. Epub 2009 Dec 23.
Additional References at PubMed
PMID:12482611   PMID:12890687   PMID:15657430   PMID:16963840   PMID:17256008   PMID:20723759   PMID:39407279  


Genomics

Comparative Map Data
Atg10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8223,843,695 - 24,133,459 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl223,844,482 - 24,133,368 (-)EnsemblGRCr8
mRatBN7.2222,109,304 - 22,398,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,108,426 - 22,398,233 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx229,158,574 - 29,449,352 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,258,921 - 27,549,707 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0222,075,993 - 22,374,108 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0219,853,546 - 20,152,918 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl219,853,546 - 20,152,884 (-)Ensemblrn6Rnor6.0
Rnor_5.0219,729,784 - 20,026,450 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4221,076,289 - 21,374,627 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera218,236,510 - 18,521,138 (-)NCBICelera
Cytogenetic Map2q12NCBI
ATG10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38581,972,023 - 82,256,133 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl581,971,615 - 82,276,857 (+)Ensemblhg38GRCh38
GRCh37581,267,842 - 81,551,952 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36581,303,630 - 81,586,528 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34581,303,629 - 81,586,524NCBI
Celera577,171,858 - 77,456,206 (+)NCBICelera
Cytogenetic Map5q14.1-q14.2NCBI
HuRef576,475,213 - 76,759,595 (+)NCBIHuRef
CHM1_1580,700,529 - 80,984,394 (+)NCBICHM1_1
T2T-CHM13v2.0582,456,197 - 82,741,920 (+)NCBIT2T-CHM13v2.0
Atg10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391391,083,467 - 91,372,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1391,083,475 - 91,372,087 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381390,935,348 - 91,224,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1390,935,356 - 91,223,968 (-)Ensemblmm10GRCm38
MGSCv371391,074,954 - 91,363,592 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361391,410,021 - 91,682,672 (-)NCBIMGSCv36mm8
Celera1394,568,446 - 94,854,283 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1346.46NCBI
Atg10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541828,119,912 - 28,363,714 (-)Ensembl
ChiLan1.0NW_00495541828,118,843 - 28,368,358 (-)NCBIChiLan1.0ChiLan1.0
ATG10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2433,050,282 - 33,338,120 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1531,205,637 - 31,516,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0533,029,074 - 33,315,496 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1533,345,591 - 33,632,229 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl533,348,306 - 33,615,883 (-)EnsemblpanPan2panpan1.1
ATG10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1325,214,203 - 25,436,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha326,451,651 - 26,672,807 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0325,127,757 - 25,350,301 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl325,135,938 - 25,350,322 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1325,081,956 - 25,303,306 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0325,049,747 - 25,270,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0325,330,817 - 25,551,944 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atg10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213181,119,537 - 181,383,280 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364691,242,111 - 1,505,743 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364691,241,854 - 1,506,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl290,437,027 - 90,666,196 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1290,436,795 - 90,665,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2292,433,581 - 92,661,452 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1476,092,887 - 76,378,175 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl476,092,832 - 76,377,403 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604924,980,384 - 25,259,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247432,381,038 - 2,649,322 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247432,381,131 - 2,663,640 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Atg10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13205,162,165 - 205,286,691 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atg10
2073 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000021941
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358125054526Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat

Markers in Region
BF402618  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8223,932,353 - 23,932,596 (+)Marker Load Pipeline
mRatBN7.2222,197,207 - 22,197,450 (+)MAPPERmRatBN7.2
Rnor_6.0219,952,411 - 19,952,653NCBIRnor6.0
Rnor_5.0219,829,176 - 19,829,418UniSTSRnor5.0
RGSC_v3.4221,167,541 - 21,167,783UniSTSRGSC3.4
Celera218,321,345 - 18,321,587UniSTS
Cytogenetic Map2q12UniSTS
RH133072  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2222,109,892 - 22,110,100 (+)MAPPERmRatBN7.2
Rnor_6.0219,854,131 - 19,854,338NCBIRnor6.0
Rnor_5.0219,730,369 - 19,730,576UniSTSRnor5.0
RGSC_v3.4221,076,874 - 21,077,081UniSTSRGSC3.4
Celera218,237,095 - 18,237,302UniSTS
Cytogenetic Map2q12UniSTS
BE107905  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2222,263,202 - 22,263,366 (+)MAPPERmRatBN7.2
Rnor_6.0220,015,960 - 20,016,123NCBIRnor6.0
Rnor_5.0219,892,725 - 19,892,888UniSTSRnor5.0
RGSC_v3.4221,233,534 - 21,233,697UniSTSRGSC3.4
Celera218,386,976 - 18,387,139UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021941   ⟹   ENSRNOP00000021942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl223,844,482 - 24,120,894 (-)Ensembl
mRatBN7.2 Ensembl222,109,312 - 22,398,227 (-)Ensembl
Rnor_6.0 Ensembl219,853,546 - 20,152,884 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095702   ⟹   ENSRNOP00000097036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl223,844,482 - 24,133,368 (-)Ensembl
mRatBN7.2 Ensembl222,109,811 - 22,398,233 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116527   ⟹   ENSRNOP00000076827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl223,844,482 - 24,129,532 (-)Ensembl
mRatBN7.2 Ensembl222,108,426 - 22,394,341 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000127619   ⟹   ENSRNOP00000104802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl223,844,482 - 24,073,197 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000140193   ⟹   ENSRNOP00000099766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl223,844,482 - 24,041,400 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142778   ⟹   ENSRNOP00000106736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl223,844,482 - 24,120,894 (-)Ensembl
RefSeq Acc Id: NM_001109505   ⟹   NP_001102975
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,844,482 - 24,133,368 (-)NCBI
mRatBN7.2222,109,308 - 22,398,231 (-)NCBI
Rnor_6.0219,853,546 - 20,152,884 (-)NCBI
Rnor_5.0219,729,784 - 20,026,450 (-)NCBI
RGSC_v3.4221,076,289 - 21,374,627 (-)RGD
Celera218,236,510 - 18,521,138 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231757   ⟹   XP_006231819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,844,481 - 24,117,570 (-)NCBI
mRatBN7.2222,109,304 - 22,382,435 (-)NCBI
Rnor_6.0219,960,866 - 20,138,445 (-)NCBI
Rnor_5.0219,729,784 - 20,026,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103148   ⟹   XP_038959076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,843,695 - 24,075,568 (-)NCBI
mRatBN7.2222,109,304 - 22,340,104 (-)NCBI
RefSeq Acc Id: XM_039103149   ⟹   XP_038959077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,844,481 - 24,133,448 (-)NCBI
mRatBN7.2222,109,304 - 22,398,313 (-)NCBI
RefSeq Acc Id: XM_039103150   ⟹   XP_038959078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,844,481 - 24,133,448 (-)NCBI
mRatBN7.2222,109,304 - 22,398,313 (-)NCBI
RefSeq Acc Id: XM_039103153   ⟹   XP_038959081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,844,481 - 24,069,197 (-)NCBI
mRatBN7.2222,109,304 - 22,333,959 (-)NCBI
RefSeq Acc Id: XM_063282566   ⟹   XP_063138636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,843,695 - 24,133,454 (-)NCBI
RefSeq Acc Id: XM_063282567   ⟹   XP_063138637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,843,695 - 24,133,414 (-)NCBI
RefSeq Acc Id: XM_063282568   ⟹   XP_063138638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,843,695 - 24,133,454 (-)NCBI
RefSeq Acc Id: XM_063282569   ⟹   XP_063138639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,843,695 - 24,133,414 (-)NCBI
RefSeq Acc Id: XM_063282570   ⟹   XP_063138640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,964,610 - 24,133,459 (-)NCBI
RefSeq Acc Id: XM_063282571   ⟹   XP_063138641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,964,618 - 24,133,417 (-)NCBI
RefSeq Acc Id: XR_010063662
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,846,382 - 23,930,838 (-)NCBI
RefSeq Acc Id: NP_001102975   ⟸   NM_001109505
- UniProtKB: A6I4P1 (UniProtKB/TrEMBL),   A0A8I6GLV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231819   ⟸   XM_006231757
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GLV9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021942   ⟸   ENSRNOT00000021941
RefSeq Acc Id: XP_038959077   ⟸   XM_039103149
- Peptide Label: isoform X2
- UniProtKB: D4A9K6 (UniProtKB/TrEMBL),   A0A8I6GLV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959078   ⟸   XM_039103150
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959076   ⟸   XM_039103148
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959081   ⟸   XM_039103153
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GLV9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097036   ⟸   ENSRNOT00000095702
Ensembl Acc Id: ENSRNOP00000076827   ⟸   ENSRNOT00000116527
RefSeq Acc Id: XP_063138636   ⟸   XM_063282566
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GLV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138638   ⟸   XM_063282568
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063138637   ⟸   XM_063282567
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138639   ⟸   XM_063282569
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138640   ⟸   XM_063282570
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138641   ⟸   XM_063282571
- Peptide Label: isoform X11
Ensembl Acc Id: ENSRNOP00000099766   ⟸   ENSRNOT00000140193
Ensembl Acc Id: ENSRNOP00000104802   ⟸   ENSRNOT00000127619
Ensembl Acc Id: ENSRNOP00000106736   ⟸   ENSRNOT00000142778

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9K6-F1-model_v2 AlphaFold D4A9K6 1-214 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691054
Promoter ID:EPDNEW_R1579
Type:multiple initiation site
Name:Atg10_1
Description:autophagy related 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0220,152,890 - 20,152,950EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587624 AgrOrtholog
BioCyc Gene G2FUF-54893 BioCyc
Ensembl Genes ENSRNOG00000016342 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021941 ENTREZGENE
  ENSRNOT00000021941.6 UniProtKB/TrEMBL
  ENSRNOT00000095702 ENTREZGENE
  ENSRNOT00000095702.2 UniProtKB/TrEMBL
  ENSRNOT00000116527.2 UniProtKB/TrEMBL
  ENSRNOT00000127619 ENTREZGENE
  ENSRNOT00000127619.1 UniProtKB/TrEMBL
  ENSRNOT00000140193.1 UniProtKB/TrEMBL
  ENSRNOT00000142778 ENTREZGENE
  ENSRNOT00000142778.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1460.50 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_3 UniProtKB/TrEMBL
KEGG Report rno:688555 UniProtKB/TrEMBL
NCBI Gene 688555 ENTREZGENE
PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 UniProtKB/TrEMBL
  UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 UniProtKB/TrEMBL
Pfam Autophagy_act_C UniProtKB/TrEMBL
PhenoGen Atg10 PhenoGen
RatGTEx ENSRNOG00000016342 RatGTEx
UniProt A0A8I5Y513_RAT UniProtKB/TrEMBL
  A0A8I6GLV9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L8W4_RAT UniProtKB/TrEMBL
  A0ABK0LD86_RAT UniProtKB/TrEMBL
  A0ABK0LT34_RAT UniProtKB/TrEMBL
  A6I4P1 ENTREZGENE, UniProtKB/TrEMBL
  D4A9K6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-07 Atg10  autophagy related 10  Atg10  autophagy related 10 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-06 Atg10  autophagy related 10 homolog (S. cerevisiae)  Atg10  autophagy-related 10 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Atg10  autophagy-related 10 (S. cerevisiae)  LOC688555  similar to autophagy-related 10-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688555  similar to autophagy-related 10-like  LOC683259  similar to autophagy-related 10-like  Data merged from RGD:1589224 1643240 APPROVED
2006-11-19 LOC688555  similar to autophagy-related 10-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683259  similar to autophagy-related 10-like      Symbol and Name status set to provisional 70820 PROVISIONAL