Tbc1d31 (TBC1 domain family, member 31) - Rat Genome Database

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Gene: Tbc1d31 (TBC1 domain family, member 31) Rattus norvegicus
Analyze
Symbol: Tbc1d31
Name: TBC1 domain family, member 31
RGD ID: 1587370
Description: Predicted to enable molecular adaptor activity. Predicted to be involved in cilium assembly. Predicted to be located in centriolar satellite. Predicted to be active in ciliary basal body. Orthologous to human TBC1D31 (TBC1 domain family member 31); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC299949; similar to WD-repeat protein 67 (Protein 4-B-3); TBC1 domain family member 31; WD repeat domain 67; WD repeat-containing protein 67; Wdr67
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8791,316,905 - 91,396,434 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl791,316,921 - 91,396,434 (+)EnsemblGRCr8
mRatBN7.2789,427,354 - 89,506,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,426,780 - 89,506,894 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx791,322,757 - 91,384,151 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0793,524,036 - 93,585,434 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0793,342,059 - 93,403,445 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0797,778,260 - 97,839,668 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,760,134 - 97,839,668 (+)Ensemblrn6Rnor6.0
Rnor_5.0798,385,290 - 98,446,226 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4794,615,000 - 94,676,965 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera786,218,671 - 86,279,485 (+)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
fragrance  (ISO)
genistein  (ISO)
indole-3-methanol  (EXP)
isobutanol  (ISO)
L-methionine  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriolar satellite  (IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:21399614  


Genomics

Comparative Map Data
Tbc1d31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8791,316,905 - 91,396,434 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl791,316,921 - 91,396,434 (+)EnsemblGRCr8
mRatBN7.2789,427,354 - 89,506,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,426,780 - 89,506,894 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx791,322,757 - 91,384,151 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0793,524,036 - 93,585,434 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0793,342,059 - 93,403,445 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0797,778,260 - 97,839,668 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,760,134 - 97,839,668 (+)Ensemblrn6Rnor6.0
Rnor_5.0798,385,290 - 98,446,226 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4794,615,000 - 94,676,965 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera786,218,671 - 86,279,485 (+)NCBICelera
Cytogenetic Map7q33NCBI
TBC1D31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388123,072,707 - 123,165,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8123,041,968 - 123,152,154 (+)Ensemblhg38GRCh38
GRCh378124,084,947 - 124,177,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368124,154,101 - 124,233,571 (+)NCBIBuild 36Build 36hg18NCBI36
Celera8120,273,958 - 120,353,417 (+)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8119,410,361 - 119,489,629 (+)NCBIHuRef
CHM1_18124,125,187 - 124,204,674 (+)NCBICHM1_1
T2T-CHM13v2.08124,203,816 - 124,296,306 (+)NCBIT2T-CHM13v2.0
Tbc1d31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391557,775,081 - 57,833,464 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1557,775,595 - 57,833,463 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381557,911,685 - 57,970,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1557,912,199 - 57,970,067 (+)Ensemblmm10GRCm38
MGSCv371557,743,754 - 57,801,623 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361557,742,282 - 57,800,151 (+)NCBIMGSCv36mm8
Celera1559,432,866 - 59,490,790 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1524.08NCBI
Tbc1d31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555401,964,408 - 2,048,283 (+)Ensembl
ChiLan1.0NW_0049555401,964,313 - 2,045,350 (+)NCBIChiLan1.0ChiLan1.0
TBC1D31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27140,471,353 - 140,594,361 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18115,984,104 - 116,107,027 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08119,736,332 - 119,859,216 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18122,521,713 - 122,601,373 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8122,521,780 - 122,601,373 (+)EnsemblpanPan2panpan1.1
TBC1D31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11321,475,094 - 21,543,380 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1321,473,751 - 21,543,380 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1321,440,694 - 21,508,901 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01321,811,741 - 21,880,036 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1321,811,420 - 21,880,021 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11321,540,192 - 21,608,370 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01321,645,672 - 21,713,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01321,888,202 - 21,956,698 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tbc1d31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,738,567 - 16,809,975 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647024,164,667 - 24,236,065 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647024,164,666 - 24,236,091 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl416,214,899 - 16,287,784 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1416,215,420 - 16,287,809 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,999,345 - 17,046,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18117,650,521 - 117,728,942 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603922,505,694 - 22,584,415 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473531,722,786 - 31,811,055 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473531,725,736 - 31,822,101 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tbc1d31
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11232,237,411 - 232,297,290 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tbc1d31
232 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:126
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000064264
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH141480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2789,506,676 - 89,506,856 (+)MAPPERmRatBN7.2
Rnor_6.0797,839,451 - 97,839,630NCBIRnor6.0
Rnor_5.0798,446,009 - 98,446,188UniSTSRnor5.0
RGSC_v3.4794,676,748 - 94,676,927UniSTSRGSC3.4
Celera786,279,268 - 86,279,447UniSTS
RH 3.4 Map7607.5UniSTS
Cytogenetic Map7q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064264   ⟹   ENSRNOP00000059695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl791,335,047 - 91,396,434 (+)Ensembl
mRatBN7.2 Ensembl789,445,504 - 89,506,894 (+)Ensembl
Rnor_6.0 Ensembl797,778,260 - 97,839,668 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086792   ⟹   ENSRNOP00000069453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl791,316,921 - 91,396,434 (+)Ensembl
mRatBN7.2 Ensembl789,449,310 - 89,506,894 (+)Ensembl
Rnor_6.0 Ensembl797,760,134 - 97,839,663 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098991   ⟹   ENSRNOP00000096681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl791,335,082 - 91,396,430 (+)Ensembl
mRatBN7.2 Ensembl789,445,587 - 89,506,894 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101050   ⟹   ENSRNOP00000083044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl791,335,047 - 91,396,434 (+)Ensembl
mRatBN7.2 Ensembl789,426,780 - 89,506,894 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119144   ⟹   ENSRNOP00000096288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl791,335,047 - 91,396,434 (+)Ensembl
mRatBN7.2 Ensembl789,445,504 - 89,506,894 (+)Ensembl
RefSeq Acc Id: NM_001134842   ⟹   NP_001128314
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8791,335,047 - 91,396,434 (+)NCBI
mRatBN7.2789,445,504 - 89,506,894 (+)NCBI
Rnor_6.0797,778,260 - 97,839,668 (+)NCBI
Rnor_5.0798,385,290 - 98,446,226 (+)NCBI
RGSC_v3.4794,615,000 - 94,676,965 (+)RGD
Celera786,218,671 - 86,279,485 (+)RGD
Sequence:
RefSeq Acc Id: XM_039078789   ⟹   XP_038934717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8791,316,905 - 91,396,434 (+)NCBI
mRatBN7.2789,427,354 - 89,506,894 (+)NCBI
RefSeq Acc Id: XM_039078791   ⟹   XP_038934719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8791,325,399 - 91,396,434 (+)NCBI
mRatBN7.2789,449,925 - 89,506,894 (+)NCBI
RefSeq Acc Id: XM_039078793   ⟹   XP_038934721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8791,365,252 - 91,396,434 (+)NCBI
mRatBN7.2789,475,583 - 89,506,894 (+)NCBI
RefSeq Acc Id: XM_063263256   ⟹   XP_063119326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8791,317,155 - 91,396,434 (+)NCBI
RefSeq Acc Id: XM_063263257   ⟹   XP_063119327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8791,325,399 - 91,396,434 (+)NCBI
RefSeq Acc Id: NP_001128314   ⟸   NM_001134842
- UniProtKB: D3ZTA2 (UniProtKB/TrEMBL),   A0A0G2JVE4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069453   ⟸   ENSRNOT00000086792
Ensembl Acc Id: ENSRNOP00000059695   ⟸   ENSRNOT00000064264
RefSeq Acc Id: XP_038934717   ⟸   XM_039078789
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZW52 (UniProtKB/TrEMBL),   A0A0G2JVE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934719   ⟸   XM_039078791
- Peptide Label: isoform X3
- UniProtKB: A6HRI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934721   ⟸   XM_039078793
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000096681   ⟸   ENSRNOT00000098991
Ensembl Acc Id: ENSRNOP00000083044   ⟸   ENSRNOT00000101050
Ensembl Acc Id: ENSRNOP00000096288   ⟸   ENSRNOT00000119144
RefSeq Acc Id: XP_063119326   ⟸   XM_063263256
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JVE4 (UniProtKB/TrEMBL),   A0A8I6AR49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119327   ⟸   XM_063263257
- Peptide Label: isoform X3
- UniProtKB: A6HRI7 (UniProtKB/TrEMBL)
Protein Domains
Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTA2-F1-model_v2 AlphaFold D3ZTA2 1-1061 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695342
Promoter ID:EPDNEW_R5866
Type:multiple initiation site
Name:Tbc1d31_1
Description:TBC1 domain family, member 31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0797,778,270 - 97,778,330EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587370 AgrOrtholog
BioCyc Gene G2FUF-33340 BioCyc
Ensembl Genes ENSRNOG00000006103 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064264 ENTREZGENE
  ENSRNOT00000064264.3 UniProtKB/TrEMBL
  ENSRNOT00000086792 ENTREZGENE
  ENSRNOT00000086792.3 UniProtKB/TrEMBL
  ENSRNOT00000098991 ENTREZGENE
  ENSRNOT00000098991.2 UniProtKB/TrEMBL
  ENSRNOT00000101050.2 UniProtKB/TrEMBL
  ENSRNOT00000119144.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  RabGAP_TBC UniProtKB/TrEMBL
  TBC1_cilium_biogenesis UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:299949 UniProtKB/TrEMBL
NCBI Gene 299949 ENTREZGENE
PANTHER TBC1 DOMAIN FAMILY MEMBER 31 UniProtKB/TrEMBL
  WD REPEAT CONTAINING PROTEIN 3 WDR3 UniProtKB/TrEMBL
Pfam TBC UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Tbc1d31 PhenoGen
PROSITE TBC_RABGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006103 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP RabGAP_TBC UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A0G2JVE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZW52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B3Z0_RAT UniProtKB/TrEMBL
  A6HRI7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTA2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-02 Tbc1d31  TBC1 domain family, member 31  Wdr67  WD repeat domain 67  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Wdr67  WD repeat domain 67  LOC299949  similar to WD-repeat protein 67 (Protein 4-B-3)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC299949  similar to WD-repeat protein 67 (Protein 4-B-3)      Symbol and Name status set to provisional 70820 PROVISIONAL