Plp2 (proteolipid protein 2) - Rat Genome Database

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Gene: Plp2 (proteolipid protein 2) Rattus norvegicus
Analyze
Symbol: Plp2
Name: proteolipid protein 2
RGD ID: 1587363
Description: Predicted to enable chemokine binding activity. Predicted to be located in plasma membrane. Predicted to be active in membrane. Orthologous to human PLP2 (proteolipid protein 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A4-LSB; Plp2_mapped; proteolipid protein 2 (colonic epithelium-enriched); Proteolipid protein 2 (intestinal membrane A4 protein); proteolipid protein 2 (mapped)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,506,153 - 17,509,552 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX17,506,059 - 17,509,550 (+)EnsemblGRCr8
mRatBN7.2X14,834,249 - 14,837,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,834,231 - 14,838,514 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX19,648,391 - 19,651,794 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,431,338 - 20,434,740 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,696,481 - 16,699,885 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,679,254 - 15,682,653 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,679,254 - 15,682,652 (+)Ensemblrn6Rnor6.0
Rnor_5.0X16,470,480 - 16,473,879 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X26,875,110 - 26,878,509 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX14,917,582 - 14,920,981 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-bromohexadecanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium acetate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
deguelin  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ellagic acid  (ISO)
entinostat  (ISO)
fenoldopam  (EXP)
finasteride  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
indole-3-methanol  (EXP)
L-methionine  (ISO)
levofloxacin  (EXP)
methotrexate  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
potassium dichromate  (ISO)
pyrogallol  (ISO)
resveratrol  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (EXP)
triphenyl phosphate  (EXP,ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IBA,IEA)
plasma membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15474493   PMID:15489334   PMID:23376485  


Genomics

Comparative Map Data
Plp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,506,153 - 17,509,552 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX17,506,059 - 17,509,550 (+)EnsemblGRCr8
mRatBN7.2X14,834,249 - 14,837,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,834,231 - 14,838,514 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX19,648,391 - 19,651,794 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,431,338 - 20,434,740 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,696,481 - 16,699,885 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,679,254 - 15,682,653 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,679,254 - 15,682,652 (+)Ensemblrn6Rnor6.0
Rnor_5.0X16,470,480 - 16,473,879 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X26,875,110 - 26,878,509 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX14,917,582 - 14,920,981 (+)NCBICelera
Cytogenetic MapXq12NCBI
PLP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,171,898 - 49,175,235 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,171,787 - 49,175,235 (+)Ensemblhg38GRCh38
GRCh37X49,028,245 - 49,031,584 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,915,217 - 48,918,382 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X48,784,643 - 48,787,808NCBI
CeleraX52,632,900 - 52,636,185 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,685,454 - 46,688,739 (+)NCBIHuRef
CHM1_1X49,060,509 - 49,063,794 (+)NCBICHM1_1
T2T-CHM13v2.0X48,583,646 - 48,586,985 (+)NCBIT2T-CHM13v2.0
Plp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,534,180 - 7,537,629 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,534,180 - 7,537,629 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X7,667,941 - 7,671,390 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,667,941 - 7,671,390 (-)Ensemblmm10GRCm38
MGSCv37X7,245,242 - 7,248,404 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X6,824,905 - 6,828,291 (-)NCBIMGSCv36mm8
CeleraX3,799,548 - 3,802,789 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.45NCBI
Plp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543658,486 - 662,441 (+)Ensembl
ChiLan1.0NW_004955543658,617 - 662,441 (+)NCBIChiLan1.0ChiLan1.0
PLP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,662,887 - 50,666,708 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,664,236 - 50,670,087 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,473,985 - 41,474,882 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,324,184 - 49,327,463 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,324,176 - 49,328,698 (+)EnsemblpanPan2panpan1.1
LOC480914
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,273,463 - 42,276,206 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,273,806 - 42,276,242 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX16,652,212 - 16,655,336 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
Plp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,806,869 - 34,810,258 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,042,171 - 1,050,661 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,047,261 - 1,050,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,215,283 - 43,218,316 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X43,215,372 - 43,218,318 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,063,314 - 48,066,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,267,194 - 46,270,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,832,254 - 11,835,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893913,105 - 916,282 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624893913,106 - 916,263 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Plp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X14,461,068 - 14,464,635 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plp2
19 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:128
Interacting mature miRNAs:154
Transcripts:ENSRNOT00000045256
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat

Markers in Region
RH130016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X14,832,270 - 14,832,460 (+)MAPPERmRatBN7.2
Rnor_6.0X15,677,276 - 15,677,465NCBIRnor6.0
Rnor_5.0X16,468,502 - 16,468,691UniSTSRnor5.0
RGSC_v3.4X26,873,132 - 26,873,321UniSTSRGSC3.4
CeleraX14,915,604 - 14,915,793UniSTS
RH 3.4 MapX157.8UniSTS
Cytogenetic MapXq13UniSTS
RH136577  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0X16,473,541 - 16,473,725NCBIRnor5.0
Rnor_5.04188,532,081 - 188,532,265NCBIRnor5.0
Rnor_5.04188,475,121 - 188,475,305NCBIRnor5.0
RGSC_v3.4X26,878,172 - 26,878,355UniSTSRGSC3.4
RGSC_v3.44127,132,356 - 127,132,539UniSTSRGSC3.4
CeleraX14,920,644 - 14,920,827UniSTS
Celera4114,311,849 - 114,312,032UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000045256   ⟹   ENSRNOP00000039462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX17,506,059 - 17,509,387 (+)Ensembl
mRatBN7.2 EnsemblX14,834,250 - 14,837,632 (+)Ensembl
Rnor_6.0 EnsemblX15,679,254 - 15,682,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098875   ⟹   ENSRNOP00000077879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX17,506,995 - 17,509,550 (+)Ensembl
mRatBN7.2 EnsemblX14,834,231 - 14,838,514 (+)Ensembl
RefSeq Acc Id: NM_207601   ⟹   NP_997484
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,506,153 - 17,509,552 (+)NCBI
mRatBN7.2X14,834,249 - 14,837,648 (+)NCBI
Rnor_6.0X15,679,254 - 15,682,653 (+)NCBI
Rnor_5.0X16,470,480 - 16,473,879 (+)NCBI
RGSC_v3.4X26,875,110 - 26,878,509 (+)RGD
CeleraX14,917,582 - 14,920,981 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_997484 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH61844 (Get FASTA)   NCBI Sequence Viewer  
  EDL83838 (Get FASTA)   NCBI Sequence Viewer  
  EDL83839 (Get FASTA)   NCBI Sequence Viewer  
  EDL83840 (Get FASTA)   NCBI Sequence Viewer  
  Q6P742 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_997484   ⟸   NM_207601
- UniProtKB: Q6P742 (UniProtKB/Swiss-Prot),   A6KP90 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039462   ⟸   ENSRNOT00000045256
Ensembl Acc Id: ENSRNOP00000077879   ⟸   ENSRNOT00000098875
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P742-F1-model_v2 AlphaFold Q6P742 1-151 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701747
Promoter ID:EPDNEW_R12271
Type:initiation region
Name:Plp2_1
Description:proteolipid protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X15,679,233 - 15,679,293EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587363 AgrOrtholog
BioCyc Gene G2FUF-2911 BioCyc
Ensembl Genes ENSRNOG00000039496 Ensembl
IMAGE_CLONE IMAGE:5621135 IMAGE-MGC_LOAD
InterPro Marvel UniProtKB/Swiss-Prot
  MARVEL-CKLF_proteins UniProtKB/Swiss-Prot
KEGG Report rno:302562 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72557 IMAGE-MGC_LOAD
NCBI Gene 302562 ENTREZGENE
PANTHER MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN UniProtKB/Swiss-Prot
  PROTEOLIPID PROTEIN 2 UniProtKB/Swiss-Prot
Pfam MARVEL UniProtKB/Swiss-Prot
PhenoGen Plp2 PhenoGen
PROSITE MARVEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000039496 RatGTEx
UniProt A0A8I5Y253_RAT UniProtKB/TrEMBL
  A0A8L2QJL6_RAT UniProtKB/TrEMBL
  A6KP90 ENTREZGENE, UniProtKB/TrEMBL
  A6KP91_RAT UniProtKB/TrEMBL
  A6KP92_RAT UniProtKB/TrEMBL
  PLP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-10 Plp2  proteolipid protein 2  Plp2  proteolipid protein 2 (colonic epithelium-enriched)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Plp2  proteolipid protein 2 (colonic epithelium-enriched)  Plp2  proteolipid protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-13   proteolipid protein 2  Plp2  proteolipid protein 2 (mapped)  Name updated 737654 APPROVED
2007-04-11 Plp2  proteolipid protein 2 (mapped)  Plp2_mapped  proteolipid protein 2 (mapped)  Data merged from RGD:3355 737654 APPROVED
2006-11-19 Plp2  proteolipid protein 2 (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Plp2_mapped  proteolipid protein 2 (mapped)  Plp2  proteolipid protein 2  Symbol and Name updated 1556543 APPROVED
2002-06-10 Plp2  Proteolipid protein 2 (intestinal membrane A4 protein)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_homology mouse homologue Plp2 penetrates at least one phospholipid bilayer of membranes 737860