Noct (nocturnin) - Rat Genome Database

Name: Noct
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Noct (nocturnin) Rattus norvegicus

Analyze

Symbol:

Noct

Name:

nocturnin

RGD ID:

1587344

Description:

Predicted to enable hydrolase activity, acting on ester bonds and mRNA binding activity. Predicted to be involved in several processes, including negative regulation of osteoblast differentiation; positive regulation of fat cell differentiation; and regulation of gene expression. Predicted to act upstream of or within P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in several cellular components, including P-body; mitochondrion; and perinuclear region of cytoplasm. Orthologous to human NOCT (nocturnin); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

carbon catabolite epression 4 homolog; carbon catabolite epression 4 homolog (S.cerevisiae); carbon catabolite repression 4-like protein; Ccr4; CCR4 carbon catabolite repression 4-like (S. cerevisiae); CCR4 carbon catabolite repression 4-like (S.cerevisiae); CCR4 carbon catabolite repression 4-like B; CCR4 carbon catabolite repression 4-like B (S. cerevisiae); CCR4 protein homolog; Ccrn4l; Ccrn4lb; circadian deadenylase NOC; LOC310395; nocturin; similar to Nocturnin (CCR4 protein homolog)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NOCT (nocturnin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Noct (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Noct (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NOCT (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NOCT (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Noct (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NOCT (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NOCT (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Noct (nocturnin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	COLGALT1 (collagen beta(1-O)galactosyltransferase 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NOCT (nocturnin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Noct (nocturnin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nocta (nocturnin a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	noctb (nocturnin b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cu	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	noct	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	137,422,074 - 137,442,282 (+)	NCBI		GRCr8
mRatBN7.2	2	135,271,189 - 135,291,407 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	135,271,189 - 135,291,400 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	141,847,100 - 141,867,308 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	139,959,364 - 139,979,572 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	134,590,976 - 134,611,144 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	140,286,661 - 140,306,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	140,286,661 - 140,306,869 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	159,759,666 - 159,779,874 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	140,120,310 - 140,140,518 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	140,086,370 - 140,089,075 (+)	NCBI
Celera	2	129,767,090 - 129,787,298 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

Actein (EXP)

aflatoxin B1 (EXP)

Alisol A (EXP)

Alisol B (EXP)

Alisol C 23-acetate (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

avobenzone (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bilirubin IXalpha (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

choline (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dimethylarsinic acid (ISO)

dioxygen (EXP)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

erythromycin estolate (EXP)

ethanol (ISO)

fentin chloride (EXP)

folic acid (ISO)

gentamycin (EXP)

graphene oxide (ISO)

graphite (EXP)

indinavir (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lamivudine (ISO)

Licochalcone B (ISO)

lipopolysaccharide (EXP,ISO)

mercury dibromide (ISO)

metformin (EXP)

methamphetamine (EXP)

methapyrilene (EXP)

methimazole (EXP)

methotrexate (ISO)

methylarsonic acid (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

milrinone (EXP)

N-methylformamide (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nickel atom (ISO)

orphenadrine (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

PCB138 (EXP)

phenformin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

ranitidine (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

saquinavir (ISO)

SB 431542 (ISO)

sevoflurane (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sulfadimethoxine (EXP)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

circadian regulation of gene expression (ISO,ISS)

circadian rhythm (IEA,ISO)

deadenylation-dependent decapping of nuclear-transcribed mRNA (ISO)

mRNA stabilization (ISO,ISS)

NADP metabolic process (ISO,ISS)

negative regulation of gene expression (ISO,ISS)

negative regulation of osteoblast differentiation (ISO,ISS)

obsolete response to extracellular stimulus (ISO,ISS)

P-body assembly (ISO)

positive regulation of fat cell differentiation (ISO,ISS)

regulation of circadian rhythm (ISO,ISS)

regulation of embryonic development (ISO,ISS)

response to lipopolysaccharide (ISO,ISS)

Cellular Component

cytoplasm (ISO,ISS)

mitochondrion (ISO,ISS)

nucleus (ISO,ISS)

P-body (ISO)

perinuclear region of cytoplasm (ISO,ISS)

Molecular Function

3'-5'-RNA exonuclease activity (IBA)

metal ion binding (IEA)

mRNA binding (ISO,ISS)

NADP phosphatase activity (ISO,ISS)

NADPH phosphatase activity (ISO,ISS)

poly(A)-specific ribonuclease activity (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11394964	PMID:12437929	PMID:17400819	PMID:18625844	PMID:20498072	PMID:20685873	PMID:22073225	PMID:23449310	PMID:31147539

Genomics

Comparative Map Data

Noct
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	137,422,074 - 137,442,282 (+)	NCBI		GRCr8
mRatBN7.2	2	135,271,189 - 135,291,407 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	135,271,189 - 135,291,400 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	141,847,100 - 141,867,308 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	139,959,364 - 139,979,572 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	134,590,976 - 134,611,144 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	140,286,661 - 140,306,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	140,286,661 - 140,306,869 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	159,759,666 - 159,779,874 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	140,120,310 - 140,140,518 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	140,086,370 - 140,089,075 (+)	NCBI
Celera	2	129,767,090 - 129,787,298 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

NOCT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	139,015,781 - 139,045,939 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	139,015,781 - 139,045,939 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	139,936,935 - 139,967,093 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	140,156,393 - 140,186,543 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	140,294,547 - 140,324,696	NCBI
Celera	4	137,269,087 - 137,299,202 (+)	NCBI		Celera
Cytogenetic Map	4	q31.1	NCBI
HuRef	4	135,667,108 - 135,696,692 (+)	NCBI		HuRef
CHM1_1	4	139,914,539 - 139,944,403 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	142,335,696 - 142,365,540 (+)	NCBI		T2T-CHM13v2.0

Noct
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	51,131,868 - 51,159,075 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	51,131,868 - 51,159,065 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	51,224,447 - 51,251,654 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	51,224,447 - 51,251,644 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	51,028,369 - 51,055,576 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	51,312,376 - 51,339,504 (+)	NCBI		MGSCv36	mm8
Celera	3	50,951,510 - 50,978,573 (+)	NCBI		Celera
Cytogenetic Map	3	C	NCBI
cM Map	3	22.12	NCBI

Noct
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955428	4,559,027 - 4,580,013 (-)	NCBI	ChiLan1.0	ChiLan1.0

NOCT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	136,888,311 - 136,920,335 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	137,280,657 - 137,312,673 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	131,378,656 - 131,409,711 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	142,691,322 - 142,719,533 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	142,691,169 - 142,719,514 (+)	Ensembl	panpan1.1		panPan2

NOCT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	3,587,769 - 3,612,184 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	3,588,695 - 3,609,307 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	3,837,334 - 3,867,423 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	3,659,799 - 3,692,580 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	3,659,883 - 3,693,417 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	3,591,391 - 3,621,501 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	3,953,295 - 3,983,576 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	4,317,051 - 4,347,187 (-)	NCBI		UU_Cfam_GSD_1.0

Noct
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	51,067,183 - 51,084,069 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	8,505,834 - 8,507,928 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936535	8,504,518 - 8,509,376 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NOCT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	87,885,420 - 87,909,241 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	87,885,411 - 87,909,231 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	93,480,613 - 93,503,288 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NOCT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	85,987,854 - 86,019,271 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	86,015,576 - 86,018,474 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	65,497,706 - 65,528,826 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Noct
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624777	19,379,447 - 19,383,477 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Noct
105 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	115
Count of miRNA genes:	94
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000014348
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1598862	Glom9	Glomerulus QTL 9	3.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	2	92337601	137337601	Rat
1598863	Cm65	Cardiac mass QTL 65	2.3		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	92337601	137337601	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	143657569	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	143657569	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	118111229	149559726	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	127447387	143657569	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat

Markers in Region

RH128474

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	135,290,943 - 135,291,123 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	140,306,413 - 140,306,592	NCBI	Rnor6.0
Rnor_5.0	2	159,779,418 - 159,779,597	UniSTS	Rnor5.0
RGSC_v3.4	2	140,140,062 - 140,140,241	UniSTS	RGSC3.4
Celera	2	129,786,842 - 129,787,021	UniSTS
RH 3.4 Map	2	827.9	UniSTS
Cytogenetic Map	2	q26	UniSTS

PMC32249P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	206,394,370 - 206,394,921 (-)	MAPPER	mRatBN7.2
mRatBN7.2	2	135,290,763 - 135,291,308 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	140,306,233 - 140,306,777	NCBI	Rnor6.0
Rnor_6.0	1	225,803,861 - 225,804,411	NCBI	Rnor6.0
Rnor_5.0	2	159,779,238 - 159,779,782	UniSTS	Rnor5.0
Rnor_5.0	1	232,755,226 - 232,755,776	UniSTS	Rnor5.0
RGSC_v3.4	1	212,187,915 - 212,188,465	UniSTS	RGSC3.4
RGSC_v3.4	2	140,139,882 - 140,140,426	UniSTS	RGSC3.4
Celera	2	129,786,662 - 129,787,206	UniSTS
Celera	1	203,893,475 - 203,894,025	UniSTS
Cytogenetic Map	2	q26	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1		1		2				54	3	5
Low	2	43	56	41	17	41	8	11	20	32	36	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_138526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF199495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014348 ⟹ ENSRNOP00000014348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	135,271,189 - 135,291,400 (+)	Ensembl
Rnor_6.0 Ensembl	2	140,286,661 - 140,306,869 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097828 ⟹ ENSRNOP00000078892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	135,286,690 - 135,291,400 (+)	Ensembl

RefSeq Acc Id:

NM_138526 ⟹ NP_612535

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	137,422,074 - 137,442,282 (+)	NCBI
mRatBN7.2	2	135,271,189 - 135,291,400 (+)	NCBI
Rnor_6.0	2	140,286,661 - 140,306,869 (+)	NCBI
Rnor_5.0	2	159,759,666 - 159,779,874 (+)	NCBI
RGSC_v3.4	2	140,120,310 - 140,140,518 (+)	RGD
Celera	2	129,767,090 - 129,787,298 (+)	RGD

Sequence:

show sequence

CCGCAGCGTGGTAGCGCTCGCCCCGCCGCCGCTCGCCGGTTGCTCCCCGGCGCTAGCCAGCTCG
CCTCAGTGAGCCACTGCCGCCGCCGCGTCCGCCTCACTACACTGCTTGCCCGGTCGGCGCCGAG
GGACGAGGAGGAAGGAGCACACCGCAGCGCAGCGGTCCCAAACCTCCACCGCCGCCCGCCTCGC
TCGGCCCGGCTCGTCAGCGCGGCGGCGCCCGGCATGTATCAGAGCCCGCGGCGGCTCTGCTCGG
CCCTGCTGCTCAGGGACGCCCCCGGCCTGCGCCGCACACTCGTGCCCGGCCCGCGCCGAACGCT
CGCCCCGCCGGTGCTCGGATCCCGGCCCGCGTCCCCACAACTGCAGGCGGCGGCCTCGGGCGCC
GCGAGGTCGCGTCCCCGAACAGTGAGTCCCATGGGAAACGGCACCAGCCGGCTGTACAGCGCCC
TCGCCAAGACCATCAACAGCAGTGCAGCCGCTCAGCACCCGGAGTATTTGGTGTCAGCTGACCC
CGAACATCTGGAGCCCATCGATCCTAAGGAACTTCTCGAGGAATGCAGGGCTGTGCTGCATACC
CGGCCACCCCGATACCAGAGGGATTTTGTGGACCTGAGGACAGATTGCTCCAGTAGCCATCCTC
CCATTAGAGTTATGCAGTGGAACATCCTCGCTCAAGCTCTCGGGGAAGGCAAAGACAACTTTGT
CCAGTGTCCTGTGGAAGCCCTCAAATGGGAGGAGAGGAAATGCCTTATCCTGGAGGAAATCCTG
GCTTACCAGCCAGATATATTATGCCTCCAAGAAGTGGACCACTATTTTGACACCTTCCAACCAC
TCCTTAGTAGACTGGGCTATCAAGGCACATTTTTCCCCAAGCCCTGGTCACCATGTCTAGATGT
GGAGCACAACAATGGTCCAGATGGCTGTGCCTTATTTTTTCTCCAAAGCCGATTCAAGCTCATC
AACAGCACCAATATTAGGCTGACAGCCATGACCCTAAAAACCAATCAGGTGGCCATTGCACAGA
CCCTGGAGTGCAAGGAGTCTGGGCGACAGTTCTGCATTGCTGTCACCCACTTAAAAGCACGCAC
TGGCTGGGAGCGGTTCCGATCAGCTCAGGGATGTGACCTCCTCCAGAACCTGCAGAACATCACA
GAGGGCGCAAAGATCCCGCTGATAGTCTGCGGGGACTTCAATGCAGAGCCAACCGAAGAGGTCT
ACAAACACTTTGCTTCCTCCAGCCTCAACCTCAACAGCGCCTACAAGCTCCTGAGCCCCGATGG
ACAGTCAGAGCCTCCCTACACAACCTGGAAGATCCGGACCTCAGGGGAGTGTCGCCACACGCTG
GACTACATCTGGTACTCCAGACATGCTCTGAGTGTCACGTCTGCTCTGGACCTGCTCACCGAAG
AACAGATTGGGCCTAACCGGCTCCCATCCTTCCATTACCCTTCAGACCACCTGTCACTAGTGTG
TGACTTCAGCTTTAACGAGGAGCCTGATGAACTTTTATAAACCCTTTCATCTTAGCCACAAGAG
TCTTAACCAGGGATGTTTTGGGAAACTGAACTAGGATAGGAAATTGCCTGGAAAAGGACACCCA
GTTTCTGCCACTTAACTCTCCATTTCCAGCATGCCCATGGGAAAAATATCGTTCACAAACCTTT
CCAGTTAAAACCTGCATTGAGAAGGTGTTTGCACTCCAGTCCGAGTGTGTGCTGTCATCCGTGT
ACCGTCCTCTCCCCGTTAGGGGCATGAGTAGCATAGGCTTTCTTGTGTTTTAGTTGAGGGTATT
CTAAAGCCCAGTTTGTGAGCCCTTCAGAATTCAAAGTAAGATGTAGGAAGTTTTCTAGAGATCA
TTTCAAGTTATTTATTTGTGGGATTTTTAAATGTCAGTGGGAAATGCATGGTAATATTTATTTT
TTATATCTTCATGTAAAATTTCGTGGATTATATAGCATTGTGGACATTTTAGAACCATGCAGGT
ACAGACTTAATTCCTTAAAACTTAAAAAGGATTTTATTTGCTGATCTGACAGAATGTACACTAA
GGAACTATTTACCCCTGGGGGATTTGTGGCTTCATATGAATGTTCTTCACAAATAATCCGTTTG
CTATGCCTCCAACTTCCTCATTGTGTTTCAGAGATTCTGTAGCGTTCGGTTCTAGTTTCCACTG
TAGTCACTGTCGGGTATTTGTGCCTTTTCTGTTGTGATGACATTGGTAGATGTGAAGATTACTC
CATCACTTCTTCTGCAATGTGCTTTTTACAAGTAGCTTGAGAACAGTTGCTAAGAATATTAGTG
AGACATCCTATCAAGATGCCAGGTGTGATCCCAACACTCAGCTGAGACAAGGAAGTCTGTCTTG
GAGGCCAGCTTGGGCTGTATATCAAGACCCTCTCTCAAAAAAAATCCCGAAGACAGCCAGATGA
TTGGGTTCAAATTTTCTAAAAAAAAATGTAAGAGTCAAAAAGATAACCTGGAGTTCTCTTCCAA
TTGTTGAAGCCTCTTCCAAACAAAATAACTGACCAGTGTGGTAAGATGGTAAATAGCTTAATGT
CTGAGTTCTGAATATTACCTAATATTAATAAACGAACTTACAAACACTG

hide sequence

RefSeq Acc Id:

XM_039102261 ⟹ XP_038958189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	137,422,543 - 137,442,279 (+)	NCBI
mRatBN7.2	2	135,271,674 - 135,291,407 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_612535	(Get FASTA)	NCBI Sequence Viewer
	XP_038958189	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG01390	(Get FASTA)	NCBI Sequence Viewer
	EDM15000	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014348
	ENSRNOP00000014348.5
	ENSRNOP00000078892
	ENSRNOP00000078892.1
	ENSRNOP00055032873
	ENSRNOP00060000352
	ENSRNOP00065036591
GenBank Protein	Q9ET55	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_612535 ⟸ NM_138526

- UniProtKB:

G3V7F4 (UniProtKB/Swiss-Prot), Q9ET55 (UniProtKB/Swiss-Prot), A0A8I5ZMB1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYQSPRRLCSALLLRDAPGLRRTLVPGPRRTLAPPVLGSRPASPQLQAAASGAARSRPRTVSPM
GNGTSRLYSALAKTINSSAAAQHPEYLVSADPEHLEPIDPKELLEECRAVLHTRPPRYQRDFVD
LRTDCSSSHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQE
VDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLINSTNIRLTAMT
LKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITEGAKIPLIVCG
DFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPYTTWKIRTSGECRHTLDYIWYSRHALS
VTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDFSFNEEPDELL

hide sequence

RefSeq Acc Id:

ENSRNOP00000014348 ⟸ ENSRNOT00000014348

RefSeq Acc Id:	XP_038958189 ⟸ XM_039102261
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZMB1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000078892 ⟸ ENSRNOT00000097828

Protein Domains

Endonuclease/exonuclease/phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ET55-F1-model_v2	AlphaFold	Q9ET55	1-428	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691315

Promoter ID:

EPDNEW_R1840

Type:

single initiation site

Name:

Noct_1

Description:

nocturnin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	140,286,729 - 140,286,789	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587344	AgrOrtholog
BioCyc Gene	G2FUF-53137	BioCyc
BioCyc Pathway	NADPHOS-DEPHOS-PWY [NAD phosphorylation and dephosphorylation]	BioCyc
BioCyc Pathway Image	NADPHOS-DEPHOS-PWY	BioCyc
Ensembl Genes	ENSRNOG00000010799	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055023550	UniProtKB/Swiss-Prot
	ENSRNOG00060000850	UniProtKB/Swiss-Prot
	ENSRNOG00065025920	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014348	ENTREZGENE
	ENSRNOT00000014348.6	UniProtKB/Swiss-Prot
	ENSRNOT00000097828.1	UniProtKB/TrEMBL
	ENSRNOT00055040469	UniProtKB/Swiss-Prot
	ENSRNOT00060001047	UniProtKB/Swiss-Prot
	ENSRNOT00065044680	UniProtKB/Swiss-Prot
Gene3D-CATH	3.60.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Deadenylase_nocturnin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Endo/exonu/phosph_ase_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Endo/exonuclease/phosphatase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:310395	UniProtKB/Swiss-Prot
NCBI Gene	310395	ENTREZGENE
PANTHER	CARBON CATABOLITE REPRESSOR PROTEIN 4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12121:SF45	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Exo_endo_phos	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Noct	PhenoGen
RatGTEx	ENSRNOG00000010799	RatGTEx
	ENSRNOG00055023550	RatGTEx
	ENSRNOG00060000850	RatGTEx
	ENSRNOG00065025920	RatGTEx
Superfamily-SCOP	SSF56219	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZMB1	ENTREZGENE, UniProtKB/TrEMBL
	G3V7F4	ENTREZGENE
	NOCT_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	G3V7F4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-06-24	Noct	nocturnin	Ccrn4l	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-05	Ccrn4l	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	Ccrn4lb	CCR4 carbon catabolite repression 4-like B (S. cerevisiae)	Data merged from RGD:620877	737654	APPROVED
2008-03-13	Ccrn4l	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	LOC310395	similar to Nocturnin (CCR4 protein homolog)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-13	Ccrn4lb	CCR4 carbon catabolite repression 4-like B (S. cerevisiae)	Ccrn4l	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC310395	similar to Nocturnin (CCR4 protein homolog)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	Ccrn4l	CCR4 carbon catabolite repression 4-like (S. cerevisiae)			Symbol and Name status set to approved	1299863	APPROVED
2003-03-04	Ccrn4l	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	Ccr4	carbon catabolite epression 4 homolog (S.cerevisiae)	Symbol and Name updated to reflect Human and Mouse nomenclature	61478	PROVISIONAL
2002-08-07	Ccr4	carbon catabolite epression 4 homolog (S.cerevisiae)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_homology	C-terminal domain has similarity to yeast transcription factor CCR4	632473

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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