Ankrd29 (ankyrin repeat domain 29) - Rat Genome Database

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Gene: Ankrd29 (ankyrin repeat domain 29) Rattus norvegicus
Analyze
Symbol: Ankrd29
Name: ankyrin repeat domain 29
RGD ID: 1587260
Description: Orthologous to human ANKRD29 (ankyrin repeat domain 29); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: ankyrin repeat domain-containing protein 29; ankyrin repeat domain-containing protein 29-like; LOC108348154; LOC498823; similar to ankyrin repeat domain 29
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,711,052 - 3,768,997 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,711,059 - 3,769,098 (-)EnsemblGRCr8
mRatBN7.2183,436,301 - 3,494,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,436,303 - 3,494,296 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx183,666,502 - 3,715,278 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,454,203 - 4,502,979 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,694,950 - 3,752,217 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,673,915 - 3,676,187 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14109,533,792 - 109,563,447 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl183,673,915 - 3,676,188 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,682,901 - 3,685,173 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.014109,245,223 - 109,274,019 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,791,224 - 3,846,087 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera183,296,795 - 3,522,725 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ankrd29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,711,052 - 3,768,997 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,711,059 - 3,769,098 (-)EnsemblGRCr8
mRatBN7.2183,436,301 - 3,494,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,436,303 - 3,494,296 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx183,666,502 - 3,715,278 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,454,203 - 4,502,979 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,694,950 - 3,752,217 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,673,915 - 3,676,187 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14109,533,792 - 109,563,447 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl183,673,915 - 3,676,188 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,682,901 - 3,685,173 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.014109,245,223 - 109,274,019 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,791,224 - 3,846,087 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera183,296,795 - 3,522,725 (-)NCBICelera
Cytogenetic Map18p13NCBI
ANKRD29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,598,926 - 23,662,911 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,598,926 - 23,663,088 (-)Ensemblhg38GRCh38
GRCh371821,178,890 - 21,242,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,433,975 - 19,496,849 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341819,434,007 - 19,496,847NCBI
Celera1817,996,135 - 18,059,022 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1818,035,116 - 18,098,200 (-)NCBIHuRef
CHM1_11821,107,288 - 21,170,162 (-)NCBICHM1_1
T2T-CHM13v2.01823,793,195 - 23,857,170 (-)NCBIT2T-CHM13v2.0
Ankrd29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,385,414 - 12,439,067 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1812,385,419 - 12,438,854 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381812,252,357 - 12,306,013 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,252,362 - 12,305,797 (-)Ensemblmm10GRCm38
MGSCv371812,410,866 - 12,464,229 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361812,397,480 - 12,453,514 (-)NCBIMGSCv36mm8
Celera1812,485,755 - 12,539,119 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map186.15NCBI
Ankrd29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540211,750,192 - 11,775,517 (-)Ensembl
ChiLan1.0NW_00495540211,751,417 - 11,775,499 (-)NCBIChiLan1.0ChiLan1.0
ANKRD29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21741,027,209 - 41,094,208 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11826,719,789 - 26,786,791 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01816,850,341 - 16,914,767 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11820,475,728 - 20,539,300 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,475,728 - 20,539,300 (-)EnsemblpanPan2panpan1.1
ANKRD29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,689,035 - 64,735,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,689,054 - 64,733,528 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha764,129,961 - 64,184,223 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0764,740,578 - 64,794,973 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl764,740,586 - 64,794,040 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1764,408,766 - 64,463,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0764,424,334 - 64,478,584 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0764,729,299 - 64,783,450 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ankrd29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,727,684 - 60,770,674 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365503,045,439 - 3,088,183 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365503,045,433 - 3,088,378 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,459,489 - 108,517,232 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16108,461,111 - 108,517,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,060,162 - 101,146,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11856,879,788 - 56,943,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1856,880,636 - 56,944,306 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605031,628,543 - 31,692,531 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247708,527,140 - 8,583,154 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247708,527,081 - 8,585,678 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ankrd29
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11531,363,338 - 31,415,845 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ankrd29
336 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:586
Count of miRNA genes:277
Interacting mature miRNAs:335
Transcripts:ENSRNOT00000067690, ENSRNOT00000073811
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat

Markers in Region
D18Chm32  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,483,428 - 3,483,562 (-)MAPPERmRatBN7.2
Rnor_6.014109,526,205 - 109,526,338NCBIRnor6.0
Rnor_5.014109,237,313 - 109,237,446UniSTSRnor5.0
RGSC_v3.4183,838,681 - 3,838,814UniSTSRGSC3.4
Celera183,530,513 - 3,530,646UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 154 82 81 50 78 50 6 333 178 11 133 81 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000067690   ⟹   ENSRNOP00000063311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,712,221 - 3,768,991 (-)Ensembl
mRatBN7.2 Ensembl183,438,471 - 3,494,231 (-)Ensembl
Rnor_6.0 Ensembl14109,533,792 - 109,563,447 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000073811   ⟹   ENSRNOP00000066450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,711,059 - 3,769,085 (-)Ensembl
mRatBN7.2 Ensembl183,436,303 - 3,494,296 (-)Ensembl
Rnor_6.0 Ensembl183,673,915 - 3,676,188 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115691   ⟹   ENSRNOP00000087664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,711,059 - 3,769,098 (-)Ensembl
mRatBN7.2 Ensembl183,436,303 - 3,494,231 (-)Ensembl
RefSeq Acc Id: NM_001190372   ⟹   NP_001177301
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,059 - 3,768,899 (-)NCBI
mRatBN7.2183,436,308 - 3,494,158 (-)NCBI
Rnor_6.0183,673,915 - 3,676,187 (-)NCBI
Rnor_5.0183,682,901 - 3,685,173 (-)NCBI
Rnor_5.014109,245,223 - 109,274,019 (+)NCBI
Celera183,296,795 - 3,522,725 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097019   ⟹   XP_038952947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,052 - 3,768,997 (-)NCBI
mRatBN7.2183,436,301 - 3,494,292 (-)NCBI
RefSeq Acc Id: XM_039097021   ⟹   XP_038952949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,052 - 3,768,994 (-)NCBI
mRatBN7.2183,436,301 - 3,494,292 (-)NCBI
RefSeq Acc Id: XM_039097022   ⟹   XP_038952950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,052 - 3,749,252 (-)NCBI
mRatBN7.2183,436,301 - 3,474,512 (-)NCBI
RefSeq Acc Id: XM_039097024   ⟹   XP_038952952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,052 - 3,749,252 (-)NCBI
mRatBN7.2183,436,301 - 3,474,512 (-)NCBI
RefSeq Acc Id: XM_039097025   ⟹   XP_038952953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,052 - 3,749,252 (-)NCBI
mRatBN7.2183,436,301 - 3,474,512 (-)NCBI
RefSeq Acc Id: XM_063277513   ⟹   XP_063133583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,711,052 - 3,749,252 (-)NCBI
RefSeq Acc Id: NP_001177301   ⟸   NM_001190372
- UniProtKB: F1M3B1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066450   ⟸   ENSRNOT00000073811
RefSeq Acc Id: XP_038952949   ⟸   XM_039097021
- Peptide Label: isoform X2
- UniProtKB: M0RAA5 (UniProtKB/TrEMBL),   F1M3B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952947   ⟸   XM_039097019
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A693 (UniProtKB/TrEMBL),   F1M3B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952952   ⟸   XM_039097024
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952953   ⟸   XM_039097025
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952950   ⟸   XM_039097022
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000063311   ⟸   ENSRNOT00000067690
Ensembl Acc Id: ENSRNOP00000087664   ⟸   ENSRNOT00000115691
RefSeq Acc Id: XP_063133583   ⟸   XM_063277513
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RAA5-F1-model_v2 AlphaFold M0RAA5 1-36 view protein structure
AF-F1M3B1-F1-model_v2 AlphaFold F1M3B1 1-274 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587260 AgrOrtholog
BioCyc Gene G2FUF-8365 BioCyc
Ensembl Genes ENSRNOG00000011856 Ensembl
  ENSRNOG00000046744 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067690.4 UniProtKB/TrEMBL
  ENSRNOT00000073811 ENTREZGENE
  ENSRNOT00000073811.3 UniProtKB/TrEMBL
  ENSRNOT00000115691 ENTREZGENE
  ENSRNOT00000115691.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene 498823 ENTREZGENE
PANTHER ANKYRIN REPEAT CONTAINING UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN 16 UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 29 UniProtKB/TrEMBL
  GH07239P UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PhenoGen Ankrd29 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011856 RatGTEx
  ENSRNOG00000046744 RatGTEx
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8I6A693 ENTREZGENE, UniProtKB/TrEMBL
  F1M3B1 ENTREZGENE, UniProtKB/TrEMBL
  M0RAA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ankrd29  ankyrin repeat domain 29  LOC108348154  ankyrin repeat domain-containing protein 29-like  Data merged from RGD:11372421 737654 PROVISIONAL
2016-08-02 LOC108348154  ankyrin repeat domain-containing protein 29-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Ankrd29  ankyrin repeat domain 29  LOC686160  similar to ankyrin repeat domain 29  Data merged from RGD:1585440 1643240 APPROVED
2008-03-05 Ankrd29  ankyrin repeat domain 29  LOC498823  similar to ankyrin repeat domain 29  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC498823  similar to ankyrin repeat domain 29      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686160  similar to ankyrin repeat domain 29      Symbol and Name status set to provisional 70820 PROVISIONAL