Eppk1 (epiplakin 1) - Rat Genome Database

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Gene: Eppk1 (epiplakin 1) Rattus norvegicus
Analyze
Symbol: Eppk1
Name: epiplakin 1
RGD ID: 1587023
Description: Predicted to enable keratin filament binding activity and structural molecule activity. Predicted to be involved in several processes, including intermediate filament bundle assembly; negative regulation of keratinocyte migration; and regulation of epithelial cell proliferation. Predicted to be located in several cellular components, including apicolateral plasma membrane; hemidesmosome; and perinucleolar compartment. Predicted to be active in cell junction; cytoplasm; and membrane. Predicted to colocalize with keratin filament. Orthologous to human EPPK1 (epiplakin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: epiplakin; epiplakin 1, pseudogene 1; Eppk1-ps1; LOC680860; similar to Epiplakin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,697,607 - 109,718,468 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7109,697,607 - 109,718,468 (-)EnsemblGRCr8
mRatBN7.27107,816,919 - 107,842,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,817,693 - 107,831,159 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7109,557,382 - 109,581,353 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,781,057 - 111,805,028 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,737,877 - 111,763,395 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,163,383 - 117,173,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07117,149,054 - 117,163,278 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47114,135,306 - 114,146,330 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7104,173,506 - 104,196,312 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
D-glucose  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
furan  (EXP)
furfural  (ISO)
genistein  (ISO)
glucose  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sotorasib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12791695   PMID:15671067   PMID:16382146   PMID:16923132   PMID:18285451   PMID:20926261   PMID:22681889   PMID:23398049   PMID:23599337   PMID:25232867   PMID:25617501   PMID:27206504  


Genomics

Comparative Map Data
Eppk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,697,607 - 109,718,468 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7109,697,607 - 109,718,468 (-)EnsemblGRCr8
mRatBN7.27107,816,919 - 107,842,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,817,693 - 107,831,159 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7109,557,382 - 109,581,353 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,781,057 - 111,805,028 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,737,877 - 111,763,395 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,163,383 - 117,173,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07117,149,054 - 117,163,278 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47114,135,306 - 114,146,330 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7104,173,506 - 104,196,312 (-)NCBICelera
Cytogenetic Map7q34NCBI
EPPK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,857,324 - 143,879,194 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,857,324 - 143,878,467 (-)Ensemblhg38GRCh38
GRCh378144,939,497 - 144,952,635 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,012,206 - 145,019,422 (-)NCBIBuild 36Build 36hg18NCBI36
Build 348145,011,899 - 145,019,422NCBI
Celera8141,252,725 - 141,261,566 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,192,173 - 140,206,900 (-)NCBIHuRef
CHM1_18144,979,743 - 144,992,882 (-)NCBICHM1_1
T2T-CHM13v2.08145,014,015 - 145,036,744 (-)NCBIT2T-CHM13v2.0
Eppk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,973,337 - 76,004,395 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,973,330 - 76,004,395 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381576,101,488 - 76,120,195 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,101,481 - 76,120,195 (-)Ensemblmm10GRCm38
MGSCv371575,932,758 - 75,950,625 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361576,602,417 - 76,609,922 (-)NCBIMGSCv36mm8
MGSCv361575,929,617 - 75,947,450 (-)NCBIMGSCv36mm8
Celera1577,603,256 - 77,619,574 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.37NCBI
Eppk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554542,512,151 - 2,526,080 (-)NCBIChiLan1.0ChiLan1.0
EPPK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,342,315 - 161,362,975 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,859,554 - 136,893,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,611,627 - 140,640,303 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,622,959 - 143,633,013 (-)NCBIPanPan1.1PanPan1.1panPan2
EPPK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,401,099 - 37,410,739 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,357,303 - 37,379,116 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01337,872,756 - 37,889,854 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11337,546,816 - 37,563,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,663,776 - 37,691,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,145,134 - 38,168,512 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101961294
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303876,729 - 891,786 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,308,135 - 8,317,259 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPPK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4785,029 - 798,563 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14780,276 - 798,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EPPK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,072,057 - 138,086,757 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236683815 - 7,927 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eppk1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11248,422,464 - 248,444,505 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Eppk1
139 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BE100353  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,816,978 - 107,817,128 (+)MAPPERmRatBN7.2
Rnor_6.07117,163,443 - 117,163,592NCBIRnor6.0
Rnor_5.07117,149,114 - 117,149,263UniSTSRnor5.0
RGSC_v3.47114,135,366 - 114,135,515UniSTSRGSC3.4
Celera7104,173,566 - 104,173,715UniSTS
RH 3.4 Map7787.4UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 18 23 36 102 63 9 22 32 32 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000109637   ⟹   ENSRNOP00000093639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7109,697,607 - 109,718,468 (-)Ensembl
mRatBN7.2 Ensembl7107,817,693 - 107,831,159 (-)Ensembl
RefSeq Acc Id: NM_001398964   ⟹   NP_001385893
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,697,607 - 109,718,468 (-)NCBI
mRatBN7.27107,816,919 - 107,837,780 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385893 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093639
  ENSRNOP00000093639.2
Ensembl Acc Id: ENSRNOP00000093639   ⟸   ENSRNOT00000109637
RefSeq Acc Id: NP_001385893   ⟸   NM_001398964
- UniProtKB: A0A8I6AHY5 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587023 AgrOrtholog
BioCyc Gene G2FUF-32957 BioCyc
Ensembl Genes ENSRNOG00000068431 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000109637 ENTREZGENE
  ENSRNOT00000109637.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1290.10 UniProtKB/TrEMBL
InterPro Plakin UniProtKB/TrEMBL
  Plakin_repeat_sf UniProtKB/TrEMBL
  Plectin_repeat UniProtKB/TrEMBL
NCBI Gene 680860 ENTREZGENE
PANTHER EPIPLAKIN UniProtKB/TrEMBL
  PTHR23169 UniProtKB/TrEMBL
Pfam Plectin UniProtKB/TrEMBL
PhenoGen Eppk1 PhenoGen
RatGTEx ENSRNOG00000068431 RatGTEx
SMART PLEC UniProtKB/TrEMBL
Superfamily-SCOP SSF75399 UniProtKB/TrEMBL
UniProt A0A8I6AHY5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Eppk1  epiplakin 1  Eppk1  epiplakin 1  Data merged from RGD:149736532 737654 PROVISIONAL
2021-08-09 Eppk1  epiplakin 1      Symbol and Name status set to provisional 45752 PROVISIONAL
2013-05-24 Eppk1  epiplakin 1  LOC686567  similar to Epiplakin  Data merged from RGD:1596332 1643240 APPROVED
2013-03-05 Eppk1  epiplakin 1  Eppk1-ps1  epiplakin 1, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Eppk1-ps1  epiplakin 1, pseudogene 1  Eppk1  epiplakin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Eppk1  epiplakin 1  LOC680860  similar to Epiplakin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686567  similar to Epiplakin      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680860  similar to Epiplakin      Symbol and Name status set to provisional 70820 PROVISIONAL