Tex13b (testis expressed 13B) - Rat Genome Database

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Gene: Tex13b (testis expressed 13B) Rattus norvegicus
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Symbol: Tex13b
Name: testis expressed 13B
RGD ID: 1587018
Description: Orthologous to human TEX13B (testis expressed 13B); INTERACTS WITH acrylamide; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680865; similar to testis expressed gene 13; testis expressed gene 13; testis expressed gene 13B; testis-expressed protein 13A; testis-expressed protein 13B; Tex13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X109,278,123 - 109,299,718 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX109,279,874 - 109,282,878 (-)EnsemblGRCr8
mRatBN7.2X104,490,937 - 104,511,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX104,490,091 - 104,494,201 (-)EnsemblmRatBN7.2
Rnor_6.0X112,156,631 - 112,160,456 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX112,154,759 - 112,159,458 (-)Ensemblrn6Rnor6.0
Rnor_5.0352,425,943 - 52,446,682 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X128,633,175 - 128,636,017 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera343,429,071 - 43,448,548 (+)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tex13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X109,278,123 - 109,299,718 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX109,279,874 - 109,282,878 (-)EnsemblGRCr8
mRatBN7.2X104,490,937 - 104,511,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX104,490,091 - 104,494,201 (-)EnsemblmRatBN7.2
Rnor_6.0X112,156,631 - 112,160,456 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX112,154,759 - 112,159,458 (-)Ensemblrn6Rnor6.0
Rnor_5.0352,425,943 - 52,446,682 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X128,633,175 - 128,636,017 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera343,429,071 - 43,448,548 (+)NCBICelera
Cytogenetic MapXq33NCBI
TEX13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X107,980,864 - 107,982,370 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX107,980,864 - 107,982,370 (-)Ensemblhg38GRCh38
GRCh37X107,224,094 - 107,225,600 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X107,110,750 - 107,112,256 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X107,030,238 - 107,031,745NCBI
CeleraX107,695,571 - 107,697,077 (-)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX96,847,531 - 96,849,037 (-)NCBIHuRef
CHM1_1X107,134,955 - 107,136,461 (-)NCBICHM1_1
T2T-CHM13v2.0X106,418,467 - 106,419,973 (-)NCBIT2T-CHM13v2.0
Tex13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X139,709,056 - 139,714,182 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX139,709,056 - 139,714,182 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X140,808,307 - 140,813,433 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX140,808,307 - 140,813,433 (-)Ensemblmm10GRCm38
MGSCv37X137,342,846 - 137,347,972 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X136,154,671 - 136,159,797 (-)NCBIMGSCv36mm8
CeleraX124,067,706 - 124,072,832 (-)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX61.5NCBI
Tex13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554907,943,444 - 7,944,995 (+)NCBIChiLan1.0ChiLan1.0
TEX13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X107,456,621 - 107,463,450 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X107,460,225 - 107,467,054 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X97,074,590 - 97,079,183 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X107,445,711 - 107,450,156 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX107,447,980 - 107,450,156 (-)EnsemblpanPan2panpan1.1
LOC102153485
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X78,682,526 - 78,684,134 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX64,827,192 - 64,828,800 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X80,315,235 - 80,316,844 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1X77,796,373 - 77,797,981 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X79,490,726 - 79,492,333 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X79,269,130 - 79,270,738 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tex13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X80,867,161 - 80,868,488 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364996,789,511 - 6,790,771 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X88,431,789 - 88,434,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X102,870,170 - 102,871,929 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X95,810,071 - 95,814,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606520,918,711 - 20,920,090 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248038,488,903 - 8,490,485 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tex13b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X93,212,919 - 93,220,152 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tex13b
86 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX92979612117740458Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X105468858125434318Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 3 8 64 70 72 43 75 43 5 194 108 10 37 26 76 29 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000087403   ⟹   ENSRNOP00000070807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX109,279,874 - 109,282,878 (-)Ensembl
mRatBN7.2 EnsemblX104,490,091 - 104,494,201 (-)Ensembl
Rnor_6.0 EnsemblX112,154,759 - 112,159,458 (-)Ensembl
RefSeq Acc Id: XM_008773472   ⟹   XP_008771694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X109,278,123 - 109,282,856 (-)NCBI
mRatBN7.2X104,490,937 - 104,494,331 (-)NCBI
Rnor_6.0X112,156,631 - 112,160,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100263   ⟹   XP_038956191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X109,279,896 - 109,299,718 (-)NCBI
mRatBN7.2X104,491,405 - 104,511,224 (-)NCBI
RefSeq Acc Id: XR_010061376
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X109,278,123 - 109,282,877 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001420369 (Get FASTA)   NCBI Sequence Viewer  
  XP_008771694 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956191 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78963 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070807
  ENSRNOP00000070807.2
RefSeq Acc Id: XP_008771694   ⟸   XM_008773472
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000070807   ⟸   ENSRNOT00000087403
RefSeq Acc Id: XP_038956191   ⟸   XM_039100263
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JYV7-F1-model_v2 AlphaFold A0A0G2JYV7 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587018 AgrOrtholog
BioCyc Gene G2FUF-1534 BioCyc
Ensembl Genes ENSRNOG00000058904 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087403 ENTREZGENE
  ENSRNOT00000087403.3 UniProtKB/TrEMBL
InterPro TEX13 UniProtKB/TrEMBL
NCBI Gene 680865 ENTREZGENE
PANTHER RNA-BINDING PROTEIN INVOLVED IN HETEROCHROMATIN ASSEMBLY-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam TEX13 UniProtKB/TrEMBL
PhenoGen Tex13b PhenoGen
RatGTEx ENSRNOG00000058904 RatGTEx
UniProt A0A0G2JYV7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-24 Tex13b  testis expressed 13B  Tex13  testis expressed gene 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-24 Tex13  testis expressed gene 13  Tex13  testis expressed 13B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-11 Tex13  testis expressed 13B  Tex13b  testis expressed gene 13B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Tex13b  testis expressed gene 13B  LOC680865  similar to testis expressed gene 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC680865  similar to testis expressed gene 13      Symbol and Name status set to provisional 70820 PROVISIONAL