Btf3l9 (basic transcription factor 3 like 9) - Rat Genome Database

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Gene: Btf3l9 (basic transcription factor 3 like 9) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Btf3l9 (Ensembl: Btf3-ps1)
Name: basic transcription factor 3 like 9 (Ensembl:basic transcription factor 3, pseudogene 1)
RGD ID: 1586834
Description: Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol. Orthologous to human BTF3 (basic transcription factor 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC683456; similar to basic transcription factor 3; transcription factor BTF3-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,469,763 - 151,470,462 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1392,576,937 - 92,577,425 (+)EnsemblGRCr8
mRatBN7.25146,185,726 - 146,186,680 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5146,186,098 - 146,186,586 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd5151,093,762 - 151,094,461 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive5153,083,637 - 153,084,336 (-)NCBILyon_Normotensive
Lyon_Hypertensive5152,258,655 - 152,259,354 (-)NCBILyon_Hypertensive
F344_StmMcwi5145,830,472 - 145,831,171 (-)NCBIF344_StmMcwi
Rnor_6.05152,189,222 - 152,189,870 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05155,870,841 - 155,871,655 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera5144,606,061 - 144,606,725 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Btf3l9
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149805999162987697Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 48 54 120 80 9 49 33 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000115863   ⟹   ENSRNOP00000091772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5146,186,098 - 146,186,586 (-)Ensembl
RefSeq Acc Id: NM_001408962   ⟹   NP_001395891
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85151,469,763 - 151,470,462 (-)NCBI
mRatBN7.25146,185,981 - 146,186,680 (-)NCBI
Dahl_SR_JrHsd5151,093,762 - 151,094,461 (-)NCBI
Lyon_Normotensive5153,083,637 - 153,084,336 (-)NCBI
Lyon_Hypertensive5152,258,655 - 152,259,354 (-)NCBI
F344_StmMcwi5145,830,472 - 145,831,171 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064698.1
Ensembl Acc Id: ENSRNOP00000091772   ⟸   ENSRNOT00000115863
RefSeq Acc Id: NP_001395891   ⟸   NM_001408962
- UniProtKB: A0A8I6ACC9 (UniProtKB/TrEMBL),   A6JGE1 (UniProtKB/TrEMBL),   M0R5M7 (UniProtKB/TrEMBL)
Protein Domains
NAC-A/B

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586834 AgrOrtholog
BioCyc Gene G2FUF-39607 BioCyc
Ensembl Genes ENSRNOG00000031864 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000070457 Ensembl
Ensembl Transcript ENSRNOT00000042547.6 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.30 UniProtKB/TrEMBL
InterPro BTF3 UniProtKB/TrEMBL
  NAC_A/B_dom_sf UniProtKB/TrEMBL
  Nas_poly-pep-assoc_cplx_dom UniProtKB/TrEMBL
NCBI Gene 683456 ENTREZGENE
PANTHER PTHR10351 UniProtKB/TrEMBL
Pfam NAC UniProtKB/TrEMBL
PhenoGen Btf3l9 PhenoGen
PROSITE NAC_AB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031864 RatGTEx
  ENSRNOG00000070457 RatGTEx
SMART NAC UniProtKB/TrEMBL
UniProt A0A8I6ACC9 ENTREZGENE
  A6JGE1 ENTREZGENE, UniProtKB/TrEMBL
  M0R5M7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Btf3l9  basic transcription factor 3 like 9  LOC683456  similar to basic transcription factor 3  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC683456  similar to basic transcription factor 3      Symbol and Name status set to provisional 70820 PROVISIONAL