Wbp2nl (WBP2 N-terminal like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Wbp2nl (WBP2 N-terminal like) Rattus norvegicus
Analyze
Symbol: Wbp2nl
Name: WBP2 N-terminal like
RGD ID: 1586458
Description: Predicted to enable chromatin DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be located in sperm flagellum and sperm head. Predicted to be active in nucleus. Orthologous to human WBP2NL (WBP2 N-terminal like); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); all-trans-retinoic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC688642; postacrosomal sheath WW domain-binding protein; similar to WW domain binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,694,910 - 115,710,912 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7115,694,922 - 115,710,689 (+)EnsemblGRCr8
mRatBN7.27113,814,793 - 113,831,974 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,814,992 - 113,831,333 (+)EnsemblmRatBN7.2
Rnor_6.07123,531,657 - 123,548,574 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,531,682 - 123,548,081 (+)Ensemblrn6Rnor6.0
Rnor_5.07123,516,366 - 123,533,289 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,674,629 - 120,689,938 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7110,129,903 - 110,146,820 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26116451  


Genomics

Comparative Map Data
Wbp2nl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,694,910 - 115,710,912 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7115,694,922 - 115,710,689 (+)EnsemblGRCr8
mRatBN7.27113,814,793 - 113,831,974 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,814,992 - 113,831,333 (+)EnsemblmRatBN7.2
Rnor_6.07123,531,657 - 123,548,574 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,531,682 - 123,548,081 (+)Ensemblrn6Rnor6.0
Rnor_5.07123,516,366 - 123,533,289 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,674,629 - 120,689,938 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7110,129,903 - 110,146,820 (+)NCBICelera
Cytogenetic Map7q34NCBI
WBP2NL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,998,788 - 42,058,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,998,725 - 42,058,456 (+)Ensemblhg38GRCh38
GRCh372242,394,792 - 42,424,479 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,724,738 - 40,754,425 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2226,200,953 - 26,230,676 (+)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,360,930 - 25,390,655 (+)NCBIHuRef
CHM1_12242,354,919 - 42,384,632 (+)NCBICHM1_1
T2T-CHM13v2.02242,478,395 - 42,537,955 (+)NCBIT2T-CHM13v2.0
Wbp2nl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,183,126 - 82,198,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,183,155 - 82,198,824 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381582,298,925 - 82,314,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,298,954 - 82,314,623 (+)Ensemblmm10GRCm38
MGSCv371582,129,414 - 82,144,988 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361582,126,719 - 82,142,107 (+)NCBIMGSCv36mm8
Celera1584,423,079 - 84,438,650 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.56NCBI
Wbp2nl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,402,545 - 27,436,906 (+)Ensembl
ChiLan1.0NW_00495541327,402,614 - 27,442,106 (+)NCBIChiLan1.0ChiLan1.0
WBP2NL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,891,166 - 22,926,920 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,974,715 - 41,008,296 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,974,715 - 41,004,007 (+)EnsemblpanPan2panpan1.1
WBP2NL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,333,420 - 23,368,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,344,094 - 23,368,153 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1023,267,499 - 23,302,315 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01024,077,925 - 24,112,940 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,088,813 - 24,112,859 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,795,297 - 23,830,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,116,424 - 24,151,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,290,357 - 24,325,371 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101960563
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,999,791 - 7,000,591 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493649210,208 - 13,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WBP2NL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,533,727 - 24,573,482 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,554,895 - 24,567,023 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045100,834,032 - 100,875,955 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wbp2nl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,711,843 - 6,736,018 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247526,689,501 - 6,736,053 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Wbp2nl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11252,026,571 - 252,041,883 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Wbp2nl
230 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:61
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000010606
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D22S1261  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27113,810,870 - 113,811,085 (+)MAPPERmRatBN7.2
Rnor_6.07123,527,557 - 123,527,771NCBIRnor6.0
Rnor_5.07123,512,276 - 123,512,490UniSTSRnor5.0
RGSC_v3.47120,670,481 - 120,670,695UniSTSRGSC3.4
Celera7110,125,280 - 110,125,494UniSTS
Cytogenetic Map7q34UniSTS
AA924710  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27113,810,843 - 113,811,005 (+)MAPPERmRatBN7.2
Rnor_6.07123,527,530 - 123,527,691NCBIRnor6.0
Rnor_5.07123,512,249 - 123,512,410UniSTSRnor5.0
RGSC_v3.47120,670,454 - 120,670,615UniSTSRGSC3.4
Celera7110,125,253 - 110,125,414UniSTS
RH 3.4 Map7893.9UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 5 34 119 70 78 51 58 51 6 215 107 8 108 37 86 27 10 10

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001067725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010606   ⟹   ENSRNOP00000010606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,694,922 - 115,710,689 (+)Ensembl
mRatBN7.2 Ensembl7113,814,992 - 113,831,333 (+)Ensembl
Rnor_6.0 Ensembl7123,531,682 - 123,548,081 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000147152   ⟹   ENSRNOP00000106289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,694,922 - 115,710,689 (+)Ensembl
RefSeq Acc Id: XM_001067725   ⟹   XP_001067725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,694,910 - 115,710,436 (+)NCBI
mRatBN7.27113,814,793 - 113,831,974 (+)NCBI
Rnor_6.07123,531,657 - 123,548,574 (+)NCBI
Rnor_5.07123,516,366 - 123,533,289 (+)NCBI
RGSC_v3.47120,674,629 - 120,689,938 (+)RGD
Sequence:
RefSeq Acc Id: XM_017595267   ⟹   XP_017450756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,695,177 - 115,710,436 (+)NCBI
mRatBN7.27113,815,094 - 113,831,974 (+)NCBI
Rnor_6.07123,531,657 - 123,548,574 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080305   ⟹   XP_038936233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,695,173 - 115,710,912 (+)NCBI
mRatBN7.27113,815,090 - 113,831,974 (+)NCBI
RefSeq Acc Id: XM_063264692   ⟹   XP_063120762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,694,910 - 115,710,912 (+)NCBI
RefSeq Acc Id: XR_005487273
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,695,172 - 115,710,912 (+)NCBI
mRatBN7.27113,815,090 - 113,831,974 (+)NCBI
RefSeq Acc Id: XR_010053898
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,694,910 - 115,710,912 (+)NCBI
RefSeq Acc Id: XP_001067725   ⟸   XM_001067725
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017450756   ⟸   XM_017595267
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000010606   ⟸   ENSRNOT00000010606
RefSeq Acc Id: XP_038936233   ⟸   XM_039080305
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063120762   ⟸   XM_063264692
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000106289   ⟸   ENSRNOT00000147152
Protein Domains
GRAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZH38-F1-model_v2 AlphaFold D3ZH38 1-359 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695539
Promoter ID:EPDNEW_R6056
Type:single initiation site
Name:Wbp2nl_1
Description:WBP2 N-terminal like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07123,531,669 - 123,531,729EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586458 AgrOrtholog
BioCyc Gene G2FUF-32631 BioCyc
Ensembl Genes ENSRNOG00000008038 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010606.7 UniProtKB/TrEMBL
  ENSRNOT00000147152 ENTREZGENE
  ENSRNOT00000147152.1 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  WBP2-like UniProtKB/TrEMBL
KEGG Report rno:688642 UniProtKB/TrEMBL
NCBI Gene 688642 ENTREZGENE
PANTHER PTHR31606 UniProtKB/TrEMBL
  PTHR31606:SF2 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
PhenoGen Wbp2nl PhenoGen
RatGTEx ENSRNOG00000008038 RatGTEx
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0ABK0L7Y1_RAT UniProtKB/TrEMBL
  A6HT59 ENTREZGENE, UniProtKB/TrEMBL
  D3ZH38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Wbp2nl  WBP2 N-terminal like  LOC688642  similar to WW domain binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC688642  similar to WW domain binding protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL