Ccdc62 (coiled-coil domain containing 62) - Rat Genome Database

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Gene: Ccdc62 (coiled-coil domain containing 62) Rattus norvegicus
Analyze
Symbol: Ccdc62
Name: coiled-coil domain containing 62
RGD ID: 1586391
Description: Predicted to enable nuclear estrogen receptor binding activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to estradiol stimulus; estrogen receptor signaling pathway; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within blastocyst hatching. Predicted to be located in acrosomal vesicle and nucleus. Human ortholog(s) of this gene implicated in spermatogenic failure 67. Orthologous to human CCDC62 (coiled-coil domain containing 62); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 62; LOC689909; similar to testis-specific protein TSP-NY isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,284,089 - 38,320,828 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1238,284,089 - 38,320,965 (-)EnsemblGRCr8
mRatBN7.21232,623,170 - 32,659,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,623,170 - 32,660,017 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1233,801,806 - 33,838,628 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,413,152 - 34,449,980 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,465,044 - 33,501,864 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,057,532 - 38,093,916 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,057,556 - 38,093,050 (-)Ensemblrn6Rnor6.0
Rnor_5.01239,928,529 - 39,964,309 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41233,747,227 - 33,783,930 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1234,310,766 - 34,347,433 (-)NCBICelera
Cytogenetic Map12q15NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
acrosomal vesicle  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18563714   PMID:19126643   PMID:27869233  


Genomics

Comparative Map Data
Ccdc62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,284,089 - 38,320,828 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1238,284,089 - 38,320,965 (-)EnsemblGRCr8
mRatBN7.21232,623,170 - 32,659,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,623,170 - 32,660,017 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1233,801,806 - 33,838,628 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,413,152 - 34,449,980 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,465,044 - 33,501,864 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,057,532 - 38,093,916 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,057,556 - 38,093,050 (-)Ensemblrn6Rnor6.0
Rnor_5.01239,928,529 - 39,964,309 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41233,747,227 - 33,783,930 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1234,310,766 - 34,347,433 (-)NCBICelera
Cytogenetic Map12q15NCBI
CCDC62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,774,572 - 122,827,528 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,774,526 - 122,827,528 (+)Ensemblhg38GRCh38
GRCh3712123,259,119 - 123,312,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,825,026 - 121,877,884 (+)NCBIBuild 36Build 36hg18NCBI36
Celera12122,851,887 - 122,906,208 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,219,085 - 120,272,349 (+)NCBIHuRef
CHM1_112123,227,341 - 123,280,310 (+)NCBICHM1_1
T2T-CHM13v2.012122,769,980 - 122,822,978 (+)NCBIT2T-CHM13v2.0
Ccdc62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,068,683 - 124,107,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,065,481 - 124,107,958 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385123,930,425 - 123,969,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,930,679 - 123,969,895 (+)Ensemblmm10GRCm38
MGSCv375124,380,698 - 124,419,904 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365124,191,309 - 124,223,466 (+)NCBIMGSCv36mm8
Celera5121,003,361 - 121,042,410 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.28NCBI
Ccdc62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,912,200 - 5,948,461 (-)Ensembl
ChiLan1.0NW_0049554825,911,233 - 5,948,178 (-)NCBIChiLan1.0ChiLan1.0
CCDC62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,865,722 - 130,921,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,862,300 - 130,917,556 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,378,805 - 120,431,822 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,615,143 - 124,664,963 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,615,139 - 124,664,052 (+)EnsemblpanPan2panpan1.1
CCDC62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,655,819 - 6,697,283 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,655,700 - 6,697,115 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha266,817,639 - 6,858,658 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0266,905,045 - 6,946,664 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,906,815 - 6,946,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,837,833 - 6,878,838 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,930,559 - 6,971,895 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,884,172 - 6,925,614 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,629,178 - 157,671,359 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365581,807,973 - 1,851,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,028,566 - 30,066,257 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11430,028,561 - 30,066,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,718,543 - 31,756,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,112,517 - 118,166,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,113,620 - 118,163,128 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037127,148,739 - 127,204,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,842,925 - 22,871,392 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474722,839,359 - 22,871,145 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc62
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11629,890,267 - 29,928,014 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc62
427 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:69
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000057814
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123424347543352593Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
BM390895  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,628,370 - 32,628,551 (+)MAPPERmRatBN7.2
Rnor_6.01238,062,451 - 38,062,631NCBIRnor6.0
Rnor_5.01239,933,448 - 39,933,628UniSTSRnor5.0
RGSC_v3.41233,752,428 - 33,752,608UniSTSRGSC3.4
Celera1234,315,966 - 34,316,146UniSTS
RH 3.4 Map12571.9UniSTS
Cytogenetic Map12q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000057814   ⟹   ENSRNOP00000054626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,284,089 - 38,320,965 (-)Ensembl
mRatBN7.2 Ensembl1232,623,170 - 32,660,017 (-)Ensembl
Rnor_6.0 Ensembl1238,057,556 - 38,093,050 (-)Ensembl
RefSeq Acc Id: NM_001134766   ⟹   NP_001128238
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,766 (-)NCBI
mRatBN7.21232,623,170 - 32,659,845 (-)NCBI
Rnor_6.01238,057,532 - 38,093,050 (-)NCBI
Rnor_5.01239,928,529 - 39,964,309 (-)NCBI
RGSC_v3.41233,747,227 - 33,783,930 (-)RGD
Celera1234,310,766 - 34,347,433 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249355   ⟹   XP_006249417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,823 (-)NCBI
mRatBN7.21232,623,170 - 32,659,908 (-)NCBI
Rnor_6.01238,057,532 - 38,093,915 (-)NCBI
Rnor_5.01239,928,529 - 39,964,309 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249356   ⟹   XP_006249418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,824 (-)NCBI
mRatBN7.21232,623,170 - 32,659,908 (-)NCBI
Rnor_6.01238,057,532 - 38,093,915 (-)NCBI
Rnor_5.01239,928,529 - 39,964,309 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249357   ⟹   XP_006249419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,826 (-)NCBI
mRatBN7.21232,623,170 - 32,659,910 (-)NCBI
Rnor_6.01238,057,532 - 38,093,915 (-)NCBI
Rnor_5.01239,928,529 - 39,964,309 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769265   ⟹   XP_008767487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,317,222 (-)NCBI
mRatBN7.21232,623,170 - 32,656,293 (-)NCBI
Rnor_6.01238,057,532 - 38,089,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598459   ⟹   XP_017453948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,827 (-)NCBI
mRatBN7.21232,623,170 - 32,659,911 (-)NCBI
Rnor_6.01238,057,532 - 38,093,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089776   ⟹   XP_038945704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,827 (-)NCBI
mRatBN7.21232,623,170 - 32,659,911 (-)NCBI
RefSeq Acc Id: XM_039089777   ⟹   XP_038945705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,739 (-)NCBI
mRatBN7.21232,623,170 - 32,659,817 (-)NCBI
RefSeq Acc Id: XM_039089778   ⟹   XP_038945706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,317,199 (-)NCBI
mRatBN7.21232,623,170 - 32,656,269 (-)NCBI
RefSeq Acc Id: XM_039089779   ⟹   XP_038945707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,317,201 (-)NCBI
mRatBN7.21232,623,170 - 32,656,293 (-)NCBI
RefSeq Acc Id: XM_039089781   ⟹   XP_038945709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,317,200 (-)NCBI
mRatBN7.21232,623,170 - 32,656,293 (-)NCBI
RefSeq Acc Id: XM_039089782   ⟹   XP_038945710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,299,700 - 38,320,826 (-)NCBI
mRatBN7.21232,638,766 - 32,659,909 (-)NCBI
RefSeq Acc Id: XM_039089783   ⟹   XP_038945711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,827 (-)NCBI
mRatBN7.21232,623,170 - 32,659,910 (-)NCBI
RefSeq Acc Id: XM_039089784   ⟹   XP_038945712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,828 (-)NCBI
mRatBN7.21232,623,170 - 32,659,912 (-)NCBI
RefSeq Acc Id: XM_063271681   ⟹   XP_063127751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,284,089 - 38,320,769 (-)NCBI
RefSeq Acc Id: NP_001128238   ⟸   NM_001134766
- UniProtKB: F1LSQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249419   ⟸   XM_006249357
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006249418   ⟸   XM_006249356
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006249417   ⟸   XM_006249355
- Peptide Label: isoform X1
- UniProtKB: F1LSQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767487   ⟸   XM_008769265
- Peptide Label: isoform X6
- UniProtKB: Q4FZT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453948   ⟸   XM_017598459
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000054626   ⟸   ENSRNOT00000057814
RefSeq Acc Id: XP_038945712   ⟸   XM_039089784
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038945704   ⟸   XM_039089776
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038945711   ⟸   XM_039089783
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038945705   ⟸   XM_039089777
- Peptide Label: isoform X6
- UniProtKB: Q4FZT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945709   ⟸   XM_039089781
- Peptide Label: isoform X8
- UniProtKB: Q4FZT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945707   ⟸   XM_039089779
- Peptide Label: isoform X7
- UniProtKB: Q4FZT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945706   ⟸   XM_039089778
- Peptide Label: isoform X6
- UniProtKB: Q4FZT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945710   ⟸   XM_039089782
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063127751   ⟸   XM_063271681
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LSQ7-F1-model_v2 AlphaFold F1LSQ7 1-701 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698623
Promoter ID:EPDNEW_R9146
Type:multiple initiation site
Name:Ccdc62_1
Description:coiled-coil domain containing 62
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,093,050 - 38,093,110EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586391 AgrOrtholog
BioCyc Gene G2FUF-19331 BioCyc
Ensembl Genes ENSRNOG00000038002 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057814 ENTREZGENE
  ENSRNOT00000057814.6 UniProtKB/TrEMBL
KEGG Report rno:689909 UniProtKB/TrEMBL
NCBI Gene 689909 ENTREZGENE
PhenoGen Ccdc62 PhenoGen
RatGTEx ENSRNOG00000038002 RatGTEx
UniProt F1LSQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q4FZT7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Ccdc62  coiled-coil domain containing 62  LOC689909  similar to testis-specific protein TSP-NY isoform a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC689909  similar to testis-specific protein TSP-NY isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL