Rpl32l2 (ribosomal protein L32 like 2) - Rat Genome Database

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Gene: Rpl32l2 (ribosomal protein L32 like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl32l2
Name: ribosomal protein L32 like 2
RGD ID: 1585830
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in membrane and ribosome. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L32-like; large ribosomal subunit protein eL32-like; LOC680959; ribosomal protein L32 like 1; Rpl32l1; similar to 60S ribosomal protein L32
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X60,033,133 - 60,033,588 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX60,033,163 - 60,033,587 (+)EnsemblGRCr8
mRatBN7.2X56,057,906 - 56,058,313 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX56,057,205 - 56,058,313 (+)EnsemblmRatBN7.2
Rnor_6.0X60,391,781 - 60,392,218 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX60,391,745 - 60,392,204 (+)Ensemblrn6Rnor6.0
Rnor_5.0X60,981,339 - 60,981,838 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X78,602,714 - 78,603,121 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX56,550,793 - 56,551,230 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl32l2
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:53
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000045382
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 10 43 108 85 83 53 30 53 5 223 92 89 56 56 30 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000045382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX60,033,163 - 60,033,587 (+)Ensembl
mRatBN7.2 EnsemblX56,057,205 - 56,058,313 (+)Ensembl
Rnor_6.0 EnsemblX60,391,745 - 60,392,204 (+)Ensembl
RefSeq Acc Id: XM_039100381   ⟹   XP_038956309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X60,033,133 - 60,033,588 (+)NCBI
mRatBN7.2X56,057,906 - 56,058,313 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956309 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076569
  ENSRNOP00000076569.2
RefSeq Acc Id: XP_038956309   ⟸   XM_039100381
- UniProtKB: A0A8I5Y5C9 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585830 AgrOrtholog
BioCyc Gene G2FUF-2298 BioCyc
Ensembl Genes ENSRNOG00000030346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045382 ENTREZGENE
  ENSRNOT00000045382.5 UniProtKB/TrEMBL
InterPro Ribosomal_L32e UniProtKB/TrEMBL
  Ribosomal_L32e_CS UniProtKB/TrEMBL
  Ribosomal_L32e_sf UniProtKB/TrEMBL
NCBI Gene 680959 ENTREZGENE
PANTHER PTHR23413 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L32-RELATED UniProtKB/TrEMBL
Pfam Ribosomal_L32e UniProtKB/TrEMBL
PhenoGen Rpl32l2 PhenoGen
PROSITE RIBOSOMAL_L32E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030346 RatGTEx
SMART Ribosomal_L32e UniProtKB/TrEMBL
Superfamily-SCOP SSF52042 UniProtKB/TrEMBL
UniProt A0A8I5Y5C9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl32l2  ribosomal protein L32 like 2  Rpl32l1  ribosomal protein L32 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl32l1  ribosomal protein L32 like 1  LOC680959  similar to 60S ribosomal protein L32  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC680959  similar to 60S ribosomal protein L32  LOC682072  similar to 60S ribosomal protein L32  Data merged from RGD:1588095 1643240 APPROVED
2006-11-19 LOC680959  similar to 60S ribosomal protein L32      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682072  similar to 60S ribosomal protein L32      Symbol and Name status set to provisional 70820 PROVISIONAL