Gnpda1 (glucosamine-6-phosphate deaminase 1) - Rat Genome Database

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Gene: Gnpda1 (glucosamine-6-phosphate deaminase 1) Rattus norvegicus
Analyze
Symbol: Gnpda1
Name: glucosamine-6-phosphate deaminase 1
RGD ID: 1585624
Description: Predicted to enable glucosamine-6-phosphate deaminase activity and identical protein binding activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process; amino sugar catabolic process; and generation of precursor metabolites and energy. Predicted to be active in cytoplasm. Orthologous to human GNPDA1 (glucosamine-6-phosphate deaminase 1); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glucosamine-6-phosphate isomerase 1; LOC683570; MGC189374; oscillin; similar to Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,416,599 - 30,428,630 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1830,416,607 - 30,428,630 (-)EnsemblGRCr8
mRatBN7.21830,165,435 - 30,177,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,165,427 - 30,177,486 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1830,269,707 - 30,281,728 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,032,289 - 31,044,293 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,367,589 - 30,379,593 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1830,586,056 - 30,598,039 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1830,169,346 - 30,181,329 (-)NCBILyon_Normotensive
Lyon_Hypertensive1830,183,563 - 30,195,546 (-)NCBILyon_Hypertensive
F344_StmMcwi1830,275,726 - 30,287,748 (-)NCBIF344_StmMcwi
Rnor_6.01831,479,117 - 31,489,154 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,479,117 - 31,487,671 (-)Ensemblrn6Rnor6.0
Rnor_5.01831,157,709 - 31,167,746 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1829,806,166 - 29,818,087 (-)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
antimycin A  (ISO)
arachidonic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
brequinar  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl malate  (ISO)
diuron  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
mono(2-ethyl-5-hydroxyhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
Salinomycin  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thioacetamide  (EXP)
triacsin C  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9438414   PMID:10481053   PMID:12477932   PMID:15632090   PMID:19056867   PMID:19199708   PMID:23376485  


Genomics

Comparative Map Data
Gnpda1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,416,599 - 30,428,630 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1830,416,607 - 30,428,630 (-)EnsemblGRCr8
mRatBN7.21830,165,435 - 30,177,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,165,427 - 30,177,486 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1830,269,707 - 30,281,728 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,032,289 - 31,044,293 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,367,589 - 30,379,593 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1830,586,056 - 30,598,039 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1830,169,346 - 30,181,329 (-)NCBILyon_Normotensive
Lyon_Hypertensive1830,183,563 - 30,195,546 (-)NCBILyon_Hypertensive
F344_StmMcwi1830,275,726 - 30,287,748 (-)NCBIF344_StmMcwi
Rnor_6.01831,479,117 - 31,489,154 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,479,117 - 31,487,671 (-)Ensemblrn6Rnor6.0
Rnor_5.01831,157,709 - 31,167,746 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1829,806,166 - 29,818,087 (-)NCBICelera
Cytogenetic Map18p11NCBI
GNPDA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385142,000,671 - 142,013,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,991,749 - 142,013,057 (-)Ensemblhg38GRCh38
GRCh375141,380,236 - 141,392,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,360,420 - 141,372,776 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345141,360,423 - 141,372,776NCBI
Celera5137,461,013 - 137,473,392 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,526,752 - 136,539,141 (-)NCBIHuRef
CHM1_15140,813,651 - 140,826,030 (-)NCBICHM1_1
T2T-CHM13v2.05142,530,868 - 142,543,257 (-)NCBIT2T-CHM13v2.0
Gnpda1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,460,588 - 38,472,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,460,588 - 38,472,056 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381838,327,537 - 38,338,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,327,535 - 38,339,003 (-)Ensemblmm10GRCm38
MGSCv371838,487,191 - 38,498,647 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361838,453,529 - 38,464,925 (-)NCBIMGSCv36mm8
Celera1839,671,431 - 39,682,887 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.23NCBI
Gnpda1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,770,063 - 11,784,188 (+)Ensembl
ChiLan1.0NW_00495541511,770,111 - 11,783,430 (+)NCBIChiLan1.0ChiLan1.0
GNPDA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,250,439 - 137,262,938 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,389,988 - 135,402,490 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,362,575 - 137,375,079 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,472,844 - 143,484,863 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,464,056 - 143,484,857 (-)EnsemblpanPan2panpan1.1
GNPDA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,938,682 - 36,949,657 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,939,750 - 36,948,966 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha233,991,312 - 34,002,522 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0237,393,556 - 37,404,762 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,393,566 - 37,404,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,468,445 - 34,479,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,279,307 - 35,290,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,086,854 - 36,098,064 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gnpda1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,607,531 - 150,618,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,181,570 - 12,191,418 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,181,544 - 12,192,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPDA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,604,362 - 143,615,990 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12143,604,362 - 143,616,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,805,866 - 149,817,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNPDA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,634,451 - 44,646,939 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,632,663 - 44,646,777 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603433,203,729 - 33,216,261 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnpda1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,222,458 - 1,235,842 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247741,222,451 - 1,235,897 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gnpda1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1156,586,886 - 6,597,744 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gnpda1
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:115
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000071560
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
D18Got31  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01831,486,024 - 31,486,195NCBIRnor6.0
Rnor_5.01831,164,616 - 31,164,787UniSTSRnor5.0
RH 3.4 Map18443.0RGD
RH 3.4 Map18443.0UniSTS
RH 2.0 Map18470.9RGD
BF390374  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1829,815,982 - 29,816,156UniSTS
RH 3.4 Map18442.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000071560   ⟹   ENSRNOP00000067293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1830,416,607 - 30,428,630 (-)Ensembl
mRatBN7.2 Ensembl1830,165,427 - 30,177,486 (-)Ensembl
Rnor_6.0 Ensembl1831,479,117 - 31,487,671 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095070   ⟹   ENSRNOP00000089865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1830,416,607 - 30,428,218 (-)Ensembl
mRatBN7.2 Ensembl1830,165,427 - 30,177,149 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109767   ⟹   ENSRNOP00000079998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1830,417,887 - 30,428,630 (-)Ensembl
mRatBN7.2 Ensembl1830,166,715 - 30,177,486 (-)Ensembl
RefSeq Acc Id: NM_001134995   ⟹   NP_001128467
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,416,607 - 30,428,630 (-)NCBI
mRatBN7.21830,165,435 - 30,177,462 (-)NCBI
Dahl_SR_JrHsd1830,586,056 - 30,598,039 (-)NCBI
Lyon_Normotensive1830,169,346 - 30,181,329 (-)NCBI
Lyon_Hypertensive1830,183,563 - 30,195,546 (-)NCBI
F344_StmMcwi1830,275,726 - 30,287,748 (-)NCBI
Rnor_6.01831,479,117 - 31,489,154 (-)NCBI
Rnor_5.01831,157,709 - 31,167,746 (-)NCBI
Celera1829,806,166 - 29,818,087 (-)RGD
Sequence:
RefSeq Acc Id: XM_063277590   ⟹   XP_063133660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,416,599 - 30,428,589 (-)NCBI
RefSeq Acc Id: NP_001128467   ⟸   NM_001134995
- UniProtKB: B5DFC6 (UniProtKB/TrEMBL),   M0RCH5 (UniProtKB/TrEMBL),   A0A9K3Y6P1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067293   ⟸   ENSRNOT00000071560
Ensembl Acc Id: ENSRNOP00000079998   ⟸   ENSRNOT00000109767
Ensembl Acc Id: ENSRNOP00000089865   ⟸   ENSRNOT00000095070
RefSeq Acc Id: XP_063133660   ⟸   XM_063277590
- Peptide Label: isoform X1
- UniProtKB: A0A9K3Y6P1 (UniProtKB/TrEMBL),   B5DFC6 (UniProtKB/TrEMBL),   M0RCH5 (UniProtKB/TrEMBL)
Protein Domains
Glucosamine/galactosamine-6-phosphate isomerase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCH5-F1-model_v2 AlphaFold M0RCH5 1-250 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585624 AgrOrtholog
BioCyc Gene G2FUF-7774 BioCyc
BioCyc Pathway GLUAMCAT-PWY [N-acetylglucosamine degradation I] BioCyc
BioCyc Pathway Image GLUAMCAT-PWY BioCyc
Ensembl Genes ENSRNOG00000047213 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071560 ENTREZGENE
  ENSRNOT00000071560.4 UniProtKB/TrEMBL
  ENSRNOT00000095070.2 UniProtKB/TrEMBL
  ENSRNOT00000109767.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1360 UniProtKB/TrEMBL
InterPro Glc/Gal-6P_isomerase UniProtKB/TrEMBL
  Glucosamine6P_isomerase UniProtKB/TrEMBL
  Glucosamine6P_isomerase_CS UniProtKB/TrEMBL
  NagB/RpiA_transferase-like UniProtKB/TrEMBL
KEGG Report rno:683570 UniProtKB/TrEMBL
NCBI Gene 683570 ENTREZGENE
PANTHER GLUCOSAMINE-6-PHOSPHATE ISOMERASE 1 UniProtKB/TrEMBL
  PTHR11280 UniProtKB/TrEMBL
Pfam Glucosamine_iso UniProtKB/TrEMBL
PhenoGen Gnpda1 PhenoGen
PROSITE GLC_GALNAC_ISOMERASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047213 RatGTEx
Superfamily-SCOP SSF100950 UniProtKB/TrEMBL
UniProt A0A8I5ZPR3_RAT UniProtKB/TrEMBL
  A0A8I6AB87_RAT UniProtKB/TrEMBL
  A0A9K3Y6P1 ENTREZGENE, UniProtKB/TrEMBL
  B5DFC6 ENTREZGENE, UniProtKB/TrEMBL
  M0RCH5 ENTREZGENE
UniProt Secondary M0RCH5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-07 Gnpda1  glucosamine-6-phosphate deaminase 1  LOC683570  similar to Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC683570  similar to Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)      Symbol and Name status set to provisional 70820 PROVISIONAL