Jmy (junction mediating and regulatory protein, p53 cofactor) - Rat Genome Database

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Gene: Jmy (junction mediating and regulatory protein, p53 cofactor) Rattus norvegicus
Analyze
Symbol: Jmy
Name: junction mediating and regulatory protein, p53 cofactor
RGD ID: 1585601
Description: Predicted to enable Arp2/3 complex binding activity; microtubule binding activity; and transcription coactivator activity. Predicted to be involved in several processes, including actin nucleation; actin polymerization-dependent cell motility; and intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in autophagosome membrane; cell leading edge; and cytoplasmic vesicle. Predicted to be active in cytoplasm and nucleus. Orthologous to human JMY (junction mediating and regulatory protein, p53 cofactor); INTERACTS WITH 17alpha-ethynylestradiol; 4,4'-diaminodiphenylmethane; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: junction mediating and regulatory protein; LOC683593; similar to junction-mediating and regulatory protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,401,047 - 26,465,959 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl226,409,969 - 26,465,649 (-)EnsemblGRCr8
mRatBN7.2224,662,104 - 24,730,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,668,854 - 24,731,006 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd226,486,896 - 26,551,892 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive226,506,313 - 26,571,301 (-)NCBILyon_Normotensive
Lyon_Hypertensive226,431,153 - 26,496,140 (-)NCBILyon_Hypertensive
F344_StmMcwi226,338,491 - 26,403,329 (-)NCBIF344_StmMcwi
Rnor_6.0223,026,506 - 23,097,702 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,042,189 - 23,097,610 (-)Ensemblrn6Rnor6.0
Rnor_5.0242,233,407 - 42,292,570 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera220,734,679 - 20,805,936 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic acid  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
Didecyldimethylammonium  (ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinic acid  (ISO)
dimethylarsinous acid  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
GSK-J4  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
paracetamol  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resorcinol  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10518217   PMID:19287377   PMID:29732611  


Genomics

Comparative Map Data
Jmy
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,401,047 - 26,465,959 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl226,409,969 - 26,465,649 (-)EnsemblGRCr8
mRatBN7.2224,662,104 - 24,730,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,668,854 - 24,731,006 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd226,486,896 - 26,551,892 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive226,506,313 - 26,571,301 (-)NCBILyon_Normotensive
Lyon_Hypertensive226,431,153 - 26,496,140 (-)NCBILyon_Hypertensive
F344_StmMcwi226,338,491 - 26,403,329 (-)NCBIF344_StmMcwi
Rnor_6.0223,026,506 - 23,097,702 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,042,189 - 23,097,610 (-)Ensemblrn6Rnor6.0
Rnor_5.0242,233,407 - 42,292,570 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera220,734,679 - 20,805,936 (-)NCBICelera
Cytogenetic Map2q12NCBI
JMY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38579,236,131 - 79,327,211 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl579,236,128 - 79,327,215 (+)Ensemblhg38GRCh38
GRCh37578,531,954 - 78,623,034 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36578,569,043 - 78,653,704 (+)NCBIBuild 36Build 36hg18NCBI36
Celera574,431,728 - 74,522,800 (+)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef573,740,043 - 73,831,040 (+)NCBIHuRef
CHM1_1577,964,474 - 78,055,488 (+)NCBICHM1_1
T2T-CHM13v2.0579,720,365 - 79,811,387 (+)NCBIT2T-CHM13v2.0
Jmy
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,566,605 - 93,636,316 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,566,609 - 93,636,316 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381393,430,097 - 93,499,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,430,101 - 93,499,808 (-)Ensemblmm10GRCm38
MGSCv371394,204,157 - 94,269,644 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361394,534,955 - 94,600,442 (-)NCBIMGSCv36mm8
Celera1397,041,912 - 97,105,423 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.85NCBI
Jmy
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542521,800,113 - 21,902,889 (-)Ensembl
ChiLan1.0NW_00495542521,800,113 - 21,902,889 (-)NCBIChiLan1.0ChiLan1.0
JMY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2435,972,566 - 36,070,279 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1534,126,198 - 34,224,480 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0535,981,666 - 36,076,428 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1536,251,080 - 36,567,564 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl536,261,971 - 36,567,349 (-)EnsemblpanPan2panpan1.1
JMY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,545,682 - 27,646,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,544,132 - 27,646,814 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha328,781,860 - 28,886,622 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0327,461,533 - 27,566,099 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,463,504 - 27,565,815 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,400,884 - 27,505,104 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,378,822 - 27,483,538 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,663,878 - 27,764,199 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Jmy
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213183,698,421 - 183,784,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365497,074,970 - 7,155,490 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365497,074,644 - 7,163,531 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JMY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,022,936 - 88,089,403 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1288,021,572 - 88,098,522 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2289,746,745 - 89,819,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JMY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1473,450,599 - 73,538,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl473,450,636 - 73,527,176 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604922,297,369 - 22,386,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jmy
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248693,746,039 - 3,857,813 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248693,746,488 - 3,862,061 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Jmy
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13202,842,088 - 202,912,011 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Jmy
508 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:58
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000071193, ENSRNOT00000075286
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat

Markers in Region
BE119886  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2224,695,303 - 24,695,471 (+)MAPPERmRatBN7.2
Rnor_6.0223,062,473 - 23,062,640NCBIRnor6.0
Rnor_5.0242,257,347 - 42,257,514UniSTSRnor5.0
Celera220,770,612 - 20,770,779UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000075286   ⟹   ENSRNOP00000065789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl226,409,969 - 26,465,649 (-)Ensembl
mRatBN7.2 Ensembl224,668,854 - 24,731,006 (-)Ensembl
Rnor_6.0 Ensembl223,042,189 - 23,097,610 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108057   ⟹   ENSRNOP00000088902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl226,409,969 - 26,465,649 (-)Ensembl
mRatBN7.2 Ensembl224,668,854 - 24,731,006 (-)Ensembl
RefSeq Acc Id: NM_001433238   ⟹   NP_001420167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd226,486,896 - 26,551,892 (-)NCBI
Lyon_Normotensive226,506,313 - 26,571,301 (-)NCBI
Lyon_Hypertensive226,431,153 - 26,496,140 (-)NCBI
F344_StmMcwi226,338,491 - 26,403,329 (-)NCBI
RefSeq Acc Id: XM_039103451   ⟹   XP_038959379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,401,047 - 26,465,959 (-)NCBI
mRatBN7.2224,662,104 - 24,730,954 (-)NCBI
RefSeq Acc Id: XM_039103452   ⟹   XP_038959380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,401,047 - 26,465,958 (-)NCBI
mRatBN7.2224,662,104 - 24,730,955 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001420167 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959379 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959380 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065789
  ENSRNOP00000065789.3
  ENSRNOP00000088902
  ENSRNOP00000088902.1
Ensembl Acc Id: ENSRNOP00000065789   ⟸   ENSRNOT00000075286
RefSeq Acc Id: XP_038959380   ⟸   XM_039103452
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959379   ⟸   XM_039103451
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000088902   ⟸   ENSRNOT00000108057
RefSeq Acc Id: NP_001420167   ⟸   NM_001433238
Protein Domains
WH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8J3-F1-model_v2 AlphaFold M0R8J3 1-969 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585601 AgrOrtholog
BioCyc Gene G2FUF-54848 BioCyc
Ensembl Genes ENSRNOG00000050343 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075286 ENTREZGENE
  ENSRNOT00000075286.5 UniProtKB/TrEMBL
  ENSRNOT00000108057 ENTREZGENE
  ENSRNOT00000108057.2 UniProtKB/TrEMBL
InterPro JMY/WHAMM UniProtKB/TrEMBL
  JMY/WHAMM_N UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
NCBI Gene 683593 ENTREZGENE
PANTHER P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED UniProtKB/TrEMBL
  PTHR23330:SF8 UniProtKB/TrEMBL
Pfam JMY UniProtKB/TrEMBL
  WHAMM-JMY_N UniProtKB/TrEMBL
PhenoGen Jmy PhenoGen
PROSITE WH2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050343 RatGTEx
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/TrEMBL
UniProt A0A8I6A624 ENTREZGENE, UniProtKB/TrEMBL
  M0R8J3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-18 Jmy  junction mediating and regulatory protein, p53 cofactor  Jmy  junction mediating and regulatory protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-17 Jmy  junction mediating and regulatory protein  LOC683593  similar to junction-mediating and regulatory protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC683593  similar to junction-mediating and regulatory protein      Symbol and Name status set to provisional 70820 PROVISIONAL