C16h8orf48 (similar to human chromosome 8 open reading frame 48) - Rat Genome Database

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Gene: C16h8orf48 (similar to human chromosome 8 open reading frame 48) Rattus norvegicus
Analyze
Symbol: C16h8orf48
Name: similar to human chromosome 8 open reading frame 48
RGD ID: 1585243
Description: Orthologous to human C8orf48 (chromosome 8 open reading frame 48); INTERACTS WITH bisphenol A; 17beta-estradiol (ortholog); atrazine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC688765; LOC688765; uncharacterized protein C8orf48 homolog; uncharacterized protein LOC688765
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81661,948,170 - 61,950,066 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1661,879,158 - 61,971,067 (-)EnsemblGRCr8
mRatBN7.21655,244,744 - 55,246,642 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1655,236,322 - 55,246,650 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1660,547,478 - 60,549,368 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01663,966,914 - 63,968,812 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01659,181,466 - 59,183,356 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01658,729,775 - 58,731,673 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01658,412,862 - 58,419,226 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41658,922,099 - 58,923,997 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1653,305,268 - 53,307,166 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
C16h8orf48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81661,948,170 - 61,950,066 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1661,879,158 - 61,971,067 (-)EnsemblGRCr8
mRatBN7.21655,244,744 - 55,246,642 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1655,236,322 - 55,246,650 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1660,547,478 - 60,549,368 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01663,966,914 - 63,968,812 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01659,181,466 - 59,183,356 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01658,729,775 - 58,731,673 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01658,412,862 - 58,419,226 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41658,922,099 - 58,923,997 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1653,305,268 - 53,307,166 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
C8orf48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38813,566,869 - 13,568,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl813,566,869 - 13,568,288 (+)Ensemblhg38GRCh38
GRCh37813,424,378 - 13,425,797 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36813,468,723 - 13,470,172 (+)NCBIBuild 36Build 36hg18NCBI36
Celera812,389,653 - 12,391,098 (+)NCBICelera
Cytogenetic Map8p22NCBI
HuRef811,966,675 - 11,968,120 (+)NCBIHuRef
CHM1_1813,626,091 - 13,627,536 (+)NCBICHM1_1
T2T-CHM13v2.0813,833,370 - 13,834,789 (+)NCBIT2T-CHM13v2.0
AI429214
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39837,460,729 - 37,462,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl837,460,758 - 37,462,687 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38836,993,575 - 36,995,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl836,993,604 - 36,995,533 (+)Ensemblmm10GRCm38
MGSCv37838,056,629 - 38,058,587 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36838,462,099 - 38,463,251 (+)NCBIMGSCv36mm8
Celera839,633,693 - 39,635,621 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.15NCBI
CUNH8orf48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554633,553,732 - 3,557,304 (-)NCBIChiLan1.0ChiLan1.0
C7H8orf48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2732,008,887 - 32,010,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan187,719,401 - 7,726,564 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0812,772,209 - 12,773,990 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.189,526,949 - 9,528,353 (+)NCBIPanPan1.1PanPan1.1panPan2
C16H8orf48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11636,994,749 - 37,028,129 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1636,994,965 - 37,022,791 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1637,465,342 - 37,498,719 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01639,035,338 - 39,068,323 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UNSW_CanFamBas_1.01637,695,155 - 37,728,287 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01637,815,704 - 37,848,685 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH8orf48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494342,223,414 - 42,224,584 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365732,917,852 - 2,918,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C17H8orf48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl171,610,565 - 1,611,374 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1171,610,182 - 1,612,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2171,408,409 - 1,410,754 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C8H8orf48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1811,688,567 - 11,690,486 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605230,643,207 - 30,644,779 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH8orf48
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248393,445,580 - 3,449,186 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
C13H8orf48
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11350,098,366 - 50,100,266 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C16h8orf48
16 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 61 132 89 11 51 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000042908   ⟹   ENSRNOP00000088270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1661,944,300 - 61,950,136 (-)Ensembl
mRatBN7.2 Ensembl1655,236,322 - 55,246,650 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117434   ⟹   ENSRNOP00000076719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1661,925,513 - 61,971,053 (-)Ensembl
mRatBN7.2 Ensembl1655,240,363 - 55,246,650 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000127545   ⟹   ENSRNOP00000111497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1661,925,463 - 61,971,067 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147987   ⟹   ENSRNOP00000106931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1661,879,158 - 61,953,984 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000161167   ⟹   ENSRNOP00000100147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1661,924,543 - 61,950,298 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165952   ⟹   ENSRNOP00000110409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1661,914,455 - 61,950,298 (-)Ensembl
RefSeq Acc Id: NM_001109512   ⟹   NP_001102982
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81661,948,170 - 61,950,066 (-)NCBI
mRatBN7.21655,244,744 - 55,246,642 (-)NCBI
Rnor_6.01658,729,775 - 58,731,673 (-)NCBI
Rnor_5.01658,412,862 - 58,419,226 (-)NCBI
RGSC_v3.41658,922,099 - 58,923,997 (-)RGD
Celera1653,305,268 - 53,307,166 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102982 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09227 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076719.1
  ENSRNOP00000088270
  ENSRNOP00000088270.1
  ENSRNOP00000100147.1
  ENSRNOP00000106931.1
  ENSRNOP00000110409.1
  ENSRNOP00000111497.1
RefSeq Acc Id: NP_001102982   ⟸   NM_001109512
- UniProtKB: A0A8I5XVC1 (UniProtKB/TrEMBL),   A6IVJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000088270   ⟸   ENSRNOT00000042908
Ensembl Acc Id: ENSRNOP00000076719   ⟸   ENSRNOT00000117434
Ensembl Acc Id: ENSRNOP00000100147   ⟸   ENSRNOT00000161167
Ensembl Acc Id: ENSRNOP00000111497   ⟸   ENSRNOT00000127545
Ensembl Acc Id: ENSRNOP00000106931   ⟸   ENSRNOT00000147987
Ensembl Acc Id: ENSRNOP00000110409   ⟸   ENSRNOT00000165952

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585243 AgrOrtholog
BioCyc Gene G2FUF-11204 BioCyc
Ensembl Genes ENSRNOG00000032376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042908 ENTREZGENE
  ENSRNOT00000042908.6 UniProtKB/TrEMBL
  ENSRNOT00000117434.2 UniProtKB/TrEMBL
  ENSRNOT00000127545.1 UniProtKB/TrEMBL
  ENSRNOT00000147987.1 UniProtKB/TrEMBL
  ENSRNOT00000161167.1 UniProtKB/TrEMBL
  ENSRNOT00000165952.1 UniProtKB/TrEMBL
InterPro DUF4606 UniProtKB/TrEMBL
KEGG Report rno:688765 UniProtKB/TrEMBL
NCBI Gene 688765 ENTREZGENE
PANTHER CHROMOSOME 8 OPEN READING FRAME 48 UniProtKB/TrEMBL
  CHROMOSOME 8 OPEN READING FRAME 48 UniProtKB/TrEMBL
Pfam DUF4606 UniProtKB/TrEMBL
PhenoGen C16h8orf48 PhenoGen
RatGTEx ENSRNOG00000032376 RatGTEx
UniProt A0A8I5XVC1 ENTREZGENE, UniProtKB/TrEMBL
  A6IVJ5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C16h8orf48  similar to human chromosome 8 open reading frame 48  LOC688765  hypothetical protein LOC688765  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC688765  hypothetical protein LOC688765      Symbol and Name status set to provisional 70820 PROVISIONAL