Rpl27l1 (ribosomal protein L27 like 1) - Rat Genome Database

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Gene: Rpl27l1 (ribosomal protein L27 like 1) Rattus norvegicus
Analyze
Symbol: Rpl27l1 (Ensembl: Rpl27-l1)
Name: ribosomal protein L27 like 1 (Ensembl:ribosomal protein L27-like 1)
RGD ID: 1585224
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome and rough endoplasmic reticulum. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L27-like; LOC688784; ribosomal protein L27-like 1; Rpl27-l1; similar to ribosomal protein L27
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X68,361,316 - 68,361,801 (-)NCBIGRCr8
mRatBN7.2X64,321,142 - 64,321,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX64,321,142 - 64,321,628 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X68,955,025 - 68,955,506 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X69,828,123 - 69,828,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X87,226,996 - 87,227,477 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX64,688,750 - 64,689,231 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl27l1
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000047308   ⟹   ENSRNOP00000081613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX64,321,142 - 64,321,628 (-)Ensembl
Rnor_6.0 EnsemblX68,955,052 - 68,955,463 (-)Ensembl
RefSeq Acc Id: NM_001408893   ⟹   NP_001395822
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X68,361,316 - 68,361,801 (-)NCBI
mRatBN7.2X64,321,142 - 64,321,627 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395822 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081613
  ENSRNOP00000081613.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000081613   ⟸   ENSRNOT00000047308
RefSeq Acc Id: NP_001395822   ⟸   NM_001408893
- UniProtKB: A0A8I5ZSW2 (UniProtKB/TrEMBL)
Protein Domains
KOW

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2148 BioCyc
Ensembl Genes ENSRNOG00000031517 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047308 ENTREZGENE
  ENSRNOT00000047308.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.770 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL27 UniProtKB/TrEMBL
  L27e_sf UniProtKB/TrEMBL
  Ribosomal_L27e UniProtKB/TrEMBL
  Ribosomal_L27e_CS UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene 688784 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L27 UniProtKB/TrEMBL
  PTHR10497 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L27e UniProtKB/TrEMBL
PhenoGen Rpl27l1 PhenoGen
PROSITE RIBOSOMAL_L27E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031517 RatGTEx
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt A0A8I5ZSW2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-12-30 Rpl27l1  ribosomal protein L27 like 1  Rpl27-l1  ribosomal protein L27-like 1  Name and Symbol changed 629549 APPROVED
2012-10-02 Rpl27-l1  ribosomal protein L27-like 1  LOC688784  similar to ribosomal protein L27  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688784  similar to ribosomal protein L27  LOC684102  similar to ribosomal protein L27  Data merged from RGD:1593948 1643240 APPROVED
2006-11-20 LOC684102  similar to ribosomal protein L27      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688784  similar to ribosomal protein L27      Symbol and Name status set to provisional 70820 PROVISIONAL