Izumo1r (IZUMO1 receptor, JUNO) - Rat Genome Database

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Gene: Izumo1r (IZUMO1 receptor, JUNO) Rattus norvegicus
Analyze
Symbol: Izumo1r
Name: IZUMO1 receptor, JUNO
RGD ID: 1585174
Description: Predicted to enable signaling receptor activity and signaling receptor binding activity. Predicted to be involved in cell adhesion; fusion of sperm to egg plasma membrane involved in single fertilization; and sperm-egg recognition. Located in plasma membrane. Orthologous to human IZUMO1R (IZUMO1 receptor, JUNO); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: folate receptor 4 (delta); folate receptor 4, delta; folate receptor delta; Folr4; FR-delta; IZUMO1 receptor protein JUNO; JUNO; LOC690037; probable folate receptor delta; similar to folate receptor 4 (delta) isoform 1; sperm-egg fusion protein Juno
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,025,830 - 20,030,829 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl820,025,831 - 20,029,578 (-)EnsemblGRCr8
mRatBN7.2811,744,384 - 11,748,131 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,725,863 - 11,748,465 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx815,729,242 - 15,733,012 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,026,986 - 14,030,756 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,002,693 - 12,006,472 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,416,418 - 13,418,907 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,416,393 - 13,420,439 (-)Ensemblrn6Rnor6.0
Rnor_5.0813,358,388 - 13,362,662 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4811,697,856 - 11,703,408 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera813,213,994 - 13,216,483 (-)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Participation of WD repeat-containing protein 54 (WDR54) in rat sperm-oocyte fusion through interaction with both IZUMO1 and JUNO. Lai X, etal., Theriogenology. 2024 Jan 15;214:286-297. doi: 10.1016/j.theriogenology.2023.10.031. Epub 2023 Nov 7.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24739963   PMID:27416963  


Genomics

Comparative Map Data
Izumo1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,025,830 - 20,030,829 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl820,025,831 - 20,029,578 (-)EnsemblGRCr8
mRatBN7.2811,744,384 - 11,748,131 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,725,863 - 11,748,465 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx815,729,242 - 15,733,012 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,026,986 - 14,030,756 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,002,693 - 12,006,472 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,416,418 - 13,418,907 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,416,393 - 13,420,439 (-)Ensemblrn6Rnor6.0
Rnor_5.0813,358,388 - 13,362,662 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4811,697,856 - 11,703,408 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera813,213,994 - 13,216,483 (-)NCBICelera
Cytogenetic Map8q12NCBI
IZUMO1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381194,304,580 - 94,308,146 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1194,304,580 - 94,308,146 (+)Ensemblhg38GRCh38
GRCh371194,037,746 - 94,041,312 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,678,451 - 93,680,506 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1191,326,626 - 91,328,681 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,108,391 - 90,110,446 (+)NCBIHuRef
CHM1_11193,921,817 - 93,923,872 (+)NCBICHM1_1
T2T-CHM13v2.01194,311,597 - 94,315,165 (+)NCBIT2T-CHM13v2.0
Izumo1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,797,110 - 14,815,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,797,110 - 14,815,245 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38914,885,814 - 14,903,951 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,885,814 - 14,903,949 (-)Ensemblmm10GRCm38
MGSCv37914,690,258 - 14,708,395 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36914,636,207 - 14,654,325 (-)NCBIMGSCv36mm8
Celera912,166,552 - 12,184,689 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.42NCBI
Izumo1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414283,630 - 287,433 (-)Ensembl
ChiLan1.0NW_004955414283,646 - 287,422 (-)NCBIChiLan1.0ChiLan1.0
IZUMO1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2995,158,740 - 95,162,308 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,250,459 - 96,254,027 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01189,318,370 - 89,322,004 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,805,614 - 92,807,669 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,805,614 - 92,807,669 (+)EnsemblpanPan2panpan1.1
IZUMO1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,597,039 - 6,599,484 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,596,141 - 6,599,840 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha216,607,027 - 6,609,932 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0216,777,138 - 6,780,041 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl216,777,062 - 6,784,386 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,557,952 - 6,560,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,626,822 - 6,629,712 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0216,676,910 - 6,679,760 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Izumo1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494779,274,912 - 79,277,682 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936674595,106 - 616,513 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936674614,455 - 616,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IZUMO1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,517,292 - 26,520,860 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1926,516,091 - 26,520,949 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,211,999 - 30,215,363 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IZUMO1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,527,589 - 85,532,968 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,527,999 - 85,530,703 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604340,253,230 - 40,259,153 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Izumo1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,968,803 - 38,971,518 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473538,967,522 - 38,971,049 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Izumo1r
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1810,699,705 - 10,703,353 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Izumo1r
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:91
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000051471, ENSRNOT00000071852
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat

Markers in Region
BF390797  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2811,744,387 - 11,744,538 (+)MAPPERmRatBN7.2
Rnor_6.0813,416,423 - 13,416,573NCBIRnor6.0
Rnor_5.0813,358,393 - 13,358,543UniSTSRnor5.0
Celera813,213,999 - 13,214,149UniSTS
RH 3.4 Map8105.6UniSTS
Cytogenetic Map8q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 2 32 110 41 32 12 79 12 4 194 131 1 98 34 70 20 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000051471   ⟹   ENSRNOP00000048978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl820,025,831 - 20,029,578 (-)Ensembl
mRatBN7.2 Ensembl811,744,390 - 11,748,465 (-)Ensembl
Rnor_6.0 Ensembl813,416,393 - 13,420,439 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118901   ⟹   ENSRNOP00000079600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl811,725,863 - 11,748,465 (-)Ensembl
RefSeq Acc Id: NM_001398801   ⟹   NP_001385730
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,025,831 - 20,029,578 (-)NCBI
mRatBN7.2811,744,384 - 11,748,131 (-)NCBI
RefSeq Acc Id: XM_063266161   ⟹   XP_063122231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,025,830 - 20,030,829 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385730 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122231 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ANW48057 (Get FASTA)   NCBI Sequence Viewer  
  EDL78457 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048978
  ENSRNOP00000048978.4
  ENSRNOP00055009055
  ENSRNOP00060007052
  ENSRNOP00065015023
GenBank Protein F1M928 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000048978   ⟸   ENSRNOT00000051471
Ensembl Acc Id: ENSRNOP00000079600   ⟸   ENSRNOT00000118901
RefSeq Acc Id: NP_001385730   ⟸   NM_001398801
- Peptide Label: precursor
- UniProtKB: F1M928 (UniProtKB/TrEMBL),   A6JNA9 (UniProtKB/TrEMBL),   A0A1B1W5N3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122231   ⟸   XM_063266161
- Peptide Label: isoform X1
- UniProtKB: A6JNA9 (UniProtKB/TrEMBL),   F1M928 (UniProtKB/TrEMBL),   A0A1B1W5N3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M928-F1-model_v2 AlphaFold F1M928 1-244 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585174 AgrOrtholog
BioCyc Gene G2FUF-31677 BioCyc
Ensembl Genes ENSRNOG00000019894 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055006985 UniProtKB/Swiss-Prot
  ENSRNOG00060005645 UniProtKB/Swiss-Prot
  ENSRNOG00065012049 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000051471 ENTREZGENE
  ENSRNOT00000051471.7 UniProtKB/Swiss-Prot
  ENSRNOT00055011517 UniProtKB/Swiss-Prot
  ENSRNOT00060009378 UniProtKB/Swiss-Prot
  ENSRNOT00065019591 UniProtKB/Swiss-Prot
InterPro Folate_rcpt UniProtKB/Swiss-Prot
  Folate_rcpt-like UniProtKB/Swiss-Prot
NCBI Gene 690037 ENTREZGENE
PANTHER FOLATE RECEPTOR UniProtKB/Swiss-Prot
  SPERM-EGG FUSION PROTEIN JUNO UniProtKB/Swiss-Prot
Pfam Folate_rec UniProtKB/Swiss-Prot
PhenoGen Izumo1r PhenoGen
RatGTEx ENSRNOG00000019894 RatGTEx
  ENSRNOG00055006985 RatGTEx
  ENSRNOG00060005645 RatGTEx
  ENSRNOG00065012049 RatGTEx
UniProt A0A1B1W5N3 ENTREZGENE
  A6JNA9 ENTREZGENE
  F1M928 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A1B1W5N3 UniProtKB/Swiss-Prot
  A6JNA9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-02-26 Izumo1r  IZUMO1 receptor, JUNO  Folr4  folate receptor 4, delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-02-24 Folr4  folate receptor 4, delta  Folr4  folate receptor 4 (delta)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Folr4  folate receptor 4 (delta)  LOC690037  similar to folate receptor 4 (delta) isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690037  similar to folate receptor 4 (delta) isoform 1  LOC686478  similar to folate receptor 4 (delta) isoform 1  Data merged from RGD:1597606 1643240 APPROVED
2006-11-20 LOC686478  similar to folate receptor 4 (delta) isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC690037  similar to folate receptor 4 (delta) isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL