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Gene: Zmat4 (zinc finger, matrin type 4) Rattus norvegicus

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Symbol:

Zmat4

Name:

zinc finger, matrin type 4

RGD ID:

1584398

Description:

Predicted to enable identical protein binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT4 (zinc finger matrin-type 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC684961; MGC188207; similar to zinc finger, matrin type 4; zinc finger matrin-type protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZMAT4 (zinc finger matrin-type 4)	HGNC	Ensembl, HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Zmat4 (zinc finger, matrin type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zmat4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZMAT4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZMAT4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zmat4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZMAT4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZMAT4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zmat4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zmat4 (zinc finger matrin-type 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM156 (transmembrane protein 156)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Zmat4 (zinc finger, matrin type 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZMAT4 (zinc finger matrin-type 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zmat4a (zinc finger, matrin-type 4a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zmat4b (zinc finger, matrin-type 4b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1231	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1231	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	dbf	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	zmat4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	74,671,975 - 75,063,805 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	74,671,979 - 75,063,750 (-)	Ensembl				GRCr8
mRatBN7.2	16	67,969,410 - 68,361,377 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	67,969,416 - 68,361,202 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	73,246,488 - 73,639,614 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	76,658,566 - 77,054,134 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	71,907,728 - 72,303,302 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	72,762,558 - 73,152,921 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	72,762,562 - 73,152,921 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	72,402,515 - 72,791,491 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	72,412,848 - 72,808,724 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	65,866,136 - 66,256,314 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amphotericin B (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

dimethylarsinic acid (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

ethanol (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylarsonic acid (ISO)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

permethrin (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IEA)

Molecular Function

identical protein binding (ISO)

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Zmat4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	74,671,975 - 75,063,805 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	74,671,979 - 75,063,750 (-)	Ensembl				GRCr8
mRatBN7.2	16	67,969,410 - 68,361,377 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	67,969,416 - 68,361,202 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	73,246,488 - 73,639,614 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	76,658,566 - 77,054,134 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	71,907,728 - 72,303,302 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	72,762,558 - 73,152,921 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	72,762,562 - 73,152,921 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	72,402,515 - 72,791,491 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	72,412,848 - 72,808,724 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	65,866,136 - 66,256,314 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

ZMAT4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	40,530,590 - 40,897,826 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	40,530,590 - 40,897,833 (-)	Ensembl			hg38	GRCh38
GRCh37	8	40,388,109 - 40,755,345 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	40,507,270 - 40,874,500 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	39,339,870 - 39,709,569 (-)	NCBI		Celera
Cytogenetic Map	8	p11.21	NCBI
HuRef	8	38,921,530 - 39,158,518 (-)	NCBI		HuRef
CHM1_1	8	40,435,030 - 40,802,391 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	40,807,525 - 41,176,451 (-)	NCBI		T2T-CHM13v2.0

Zmat4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	24,137,347 - 24,553,133 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	24,126,035 - 24,646,601 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	23,647,326 - 24,063,117 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	23,636,019 - 24,156,585 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	24,780,133 - 25,173,577 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	25,135,238 - 25,528,648 (+)	NCBI		MGSCv36	mm8
Celera	8	25,162,759 - 25,544,118 (+)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI
cM Map	8	11.5	NCBI

Zmat4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955536	2,021,532 - 2,396,689 (+)	Ensembl
ChiLan1.0	NW_004955536	2,021,790 - 2,396,689 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZMAT4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	58,964,182 - 59,345,661 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	34,681,014 - 35,062,641 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	39,713,452 - 40,137,861 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	37,220,316 - 37,590,006 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	37,270,958 - 37,514,733 (-)	Ensembl			panPan2	panpan1.1

ZMAT4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	24,556,338 - 24,893,628 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	24,555,934 - 25,036,335 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	25,060,093 - 25,397,330 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	26,304,170 - 26,641,644 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	26,304,135 - 26,691,009 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	24,675,005 - 25,012,329 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	25,237,265 - 25,574,897 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	25,289,045 - 25,626,701 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zmat4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	47,864,098 - 48,074,854 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936843	15,723 - 132,710 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936843	15,665 - 133,207 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZMAT4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	9,789,826 - 10,196,187 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	9,789,830 - 10,196,218 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	11,345,457 - 11,380,311 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZMAT4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	38,511,631 - 38,873,349 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	38,561,310 - 38,873,093 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	2,990,375 - 3,354,072 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zmat4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624780	2,587,776 - 3,027,986 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624780	2,587,881 - 3,029,600 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zmat4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	62,385,531 - 62,763,220 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zmat4
3103 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	930
Count of miRNA genes:	323
Interacting mature miRNAs:	435
Transcripts:	ENSRNOT00000048602
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	62414464	75736480	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	32361043	77361043	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	31058039	76058039	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	59428714	91442908	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	34398294	79398294	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	31885271	76885271	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	59428714	91442908	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	59428714	91442908	Rat

Markers in Region

D16Rat34

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	74,910,501 - 74,910,745 (+)	Marker Load Pipeline
mRatBN7.2	16	68,207,971 - 68,208,215 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	73,001,059 - 73,001,302	NCBI	Rnor6.0
Rnor_5.0	16	72,640,303 - 72,640,546	UniSTS	Rnor5.0
RGSC_v3.4	16	72,653,395 - 72,653,827	RGD	RGSC3.4
RGSC_v3.4	16	72,653,470 - 72,653,713	UniSTS	RGSC3.4
Celera	16	66,104,531 - 66,104,774	UniSTS
RGSC_v3.1	16	72,653,735 - 72,653,978	RGD
RH 3.4 Map	16	658.4	RGD
RH 3.4 Map	16	658.4	UniSTS
RH 2.0 Map	16	771.3	RGD
SHRSP x BN Map	16	33.9799	RGD
FHH x ACI Map	16	38.0699	RGD
Cytogenetic Map	16	q12.5	UniSTS

D16Got67

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	68,283,475 - 68,283,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	73,074,979 - 73,075,191	NCBI	Rnor6.0
Rnor_5.0	16	72,714,385 - 72,714,597	UniSTS	Rnor5.0
RGSC_v3.4	16	72,730,715 - 72,731,019	RGD	RGSC3.4
RGSC_v3.4	16	72,730,808 - 72,731,020	UniSTS	RGSC3.4
Celera	16	66,178,823 - 66,179,035	UniSTS
RGSC_v3.1	16	72,731,072 - 72,731,284	RGD
RH 3.4 Map	16	659.8	RGD
RH 3.4 Map	16	659.8	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

AU049173

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	74,834,984 - 74,835,212 (+)	Marker Load Pipeline
mRatBN7.2	16	68,132,445 - 68,132,673 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	72,925,627 - 72,925,854	NCBI	Rnor6.0
Rnor_5.0	16	72,565,253 - 72,565,480	UniSTS	Rnor5.0
RGSC_v3.4	16	72,576,988 - 72,577,215	UniSTS	RGSC3.4
Celera	16	66,028,853 - 66,029,080	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
4	1	61	141	68	64	38	29	38	6	228	108	5	124	77	91	26	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048602 ⟹ ENSRNOP00000043474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	74,671,979 - 75,063,750 (-)	Ensembl
mRatBN7.2 Ensembl	16	67,969,416 - 68,361,202 (-)	Ensembl
Rnor_6.0 Ensembl	16	72,762,562 - 73,152,921 (-)	Ensembl

RefSeq Acc Id:

NM_001134747 ⟹ NP_001128219

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	74,671,975 - 75,063,750 (-)	NCBI
mRatBN7.2	16	67,969,412 - 68,361,202 (-)	NCBI
Rnor_6.0	16	72,762,558 - 73,152,921 (-)	NCBI
Rnor_5.0	16	72,402,515 - 72,791,491 (-)	NCBI
RGSC_v3.4	16	72,412,848 - 72,808,724 (-)	RGD
Celera	16	65,866,136 - 66,256,314 (-)	RGD

Sequence:

show sequence

AGCTGCTGAAAGGTCTGGTCGCAGAGACAGGAACGCAGCATCCTCAGCGTGCTCCATCCCGGCA
GCGTCCTCCTGCGCTCCGCCGGGCAGCGAGCCTCCGGACAACAGCCCCTCTGCTTCTCGGAGAA
GCCTGATGAAGTCCTCCGATATCGATCAGGATTTATTTACAGACAGTTACTGCAAGGTGTGCAG
TGCACAGCTGATATCCGAGTCCCAGCGGGTGGCCCATTATGAGAGTCGAAAGCATGCCAGCAAA
GTCCGGCTATATTACATGCTTCACCCCAGGGATGGTGGGTGTCCTGCCAAGAGGCTCCGAGCAG
AAAACGGAAGCGATGCTGACATGGTGGATAAGAATAAATGCTGTACACTCTGTAACATGTCCTT
TACCTCAGCCGTGGTGGCCGACTCACATTACCAAGGCAAAATCCACGCCAAAAGGTTAAAACTG
TTGCTAGGAGAGAAACCTCCATTGAAAACCACAGCGGCACCACTGACTTCACTTAAGGCCCCTC
GAGTGGACACGGCCCCCATGGTCGCATCTCCCTATCAGAGAAGAGACTCAGACAGGTACTGCGG
TCTCTGTGCAGCCTGGTTTAACAATCCTCTGATGGCCCAGCAGCATTACGACGGCAAGAAACAC
AAAAAGAACGCAGCTCGGGTTGCCTTGCTAGAGCAGCTTGGGACATCTCTGGATCTGGGGGAAC
TCAGAGGTCTGAGACGCACTTACAGATGTACCACCTGCAGTGTCTCGCTCAACTCAATAGAACA
GTATCATGCACACCTGCAAGGATCAAAACATCAGACCAACCTGAAGAATAAGTAGTGACAGCAT
CAATCAAGAGCTAAGAAGAGACTCCAGCATTCTTCCTGTGGTAGAGAACTGCTCACCAACCAAA
AAGAGGATCCTTTCTTGAGCAATGAACATTTCTTACAAGGATTCACAGATTAGATTAACACATG
ACCAGTATTGATTTTTGAAAGTAAATAAGATTTCTTTTTCTTCTTTTCATTTAGTGGCAAATTA
TACTTGGATTTAACAGAATCCTTTTCTGATAACATGTTTAGCACAAGTTCTAAACTGCAAACAC
ACAGCAGCTAGTCAGAGCATTATTCAAACTTACAAAGAGTGGAAATTTTAATTTCCAATTTATT
CTAGATTTCCATAGAGTTACGATGATTCTGTGACACCCTTCATGATTATCATGTAAGTCTCCTA
GATCCATTAACAAATATACTTTTGTTATCATGGGGAACATAGTTGGTGACGACAACCACAAAAA
CACAACAAATTGTGGTTTGTAGAAGTTATATAACGATGAGCCAGCCTTGCCTCTAAATGCCAGG
AGCGTGAAAGCAGGCAGAAACAGAGAGGAAGGACCTTCACTCTGGATCGCCTTGATAGAAGGCT
TCTCAAGACACGTTCTCCTTGCAAGCTTCCAGATCATAGAGAAATTAGTTTGACTGCATGATGA
TCCTATTAAGTAAAAAATGTCTTCACAGTGGTTGACCTTGATGTACTGCTTTTCTAAAGGTATC
CAAAGGAGAATTTTAAACCCCAGAGTGAGATGGAAGTAATTCTTAGAAAGTTGGCCTGGATTGT
GGGCTCTAATTTGGGGCAGTAATGATTTAGTGTGTGTCGGGGGAGGGAGAGACTGATTAAATCC
TGAAGAAGTTTCCTCCTCCTGCTTCTCTTCATCTTGTTGCTGAGCTGGGATTCAGTGACTTTGA
ACAGAACTCCTCTGGTTGGAGGATGGACCAGAGAACTGATGCTCTTTGAAGGGATGAAGACTGG
GTGAGACTGTGAAATTCCTTCTCTAGGGCTAATTGCTCTGCATCCTGTTGGGAAGCCGTGTCTT
GCAGACTCTGCGAGGTAGACACAGAACTTCCTCTCCTGGGCTCTCAGCTGGCTGGAGCAGCCCT
TTATACCTGGTGACCACCAATCTACCGTACGTCAGACTTTTTCCAGACATCAACGCTTTCCACA
GAGATCTGAGGTGGTGACAGCCAGTGAGCAATAAATGAAACGACACGGAAATGCAGTGTTGTTG
TTAAGGTGCCTGTTTTGTTGTGTGAGGAGGTCACGGTCCCTAGGGACCAGACCATGGCTGCAAA
GAAGAAGGTCACACACCGTGTACAGTCATGCCGCCGGTGGGGAGCAAGAGGGGTGTGGTGACGA
TTTTATTTTGCTATTTAAGAAAGAAGCACACAACAGAGCTACAAGCCCTCCCGTGGTAGCTTTT
CTTCGAATGTGTGGGGTAAAGCTTTACTTGTCAATTCTGCTGTAAAATAAGCATAGTCTGAGGT
ATTTTTTGTTGTTTGTTTGTTTTTAAACCTTTCTGTTTCTGTTTAGTGCCTGAGCTCTTTCCCT
GAGGTGTTGTGTTTATTTTTTTTTTAATGACCTAAGATAGAAAAGCCTATGAACATAGATTTCC
TTTGCGTTCCAATGACGCTTTGCCAAGCCCTTTATAGATAAGCCTCCAGCTACAATAATCAGAT
TATTTCAGAGTGCCTCATCTAAATACCATTGCTCTTTGGCAAGCTGCCACAAACACCCACCAGA
CTTTTTCTTGGTTTGATTGTCCTCAAGTTTTCATGCCCATGCAGATAAGGGGAATGGAATCCCA
GCATGCTGTGAGGATCACTTGGCCAGACTACTAATTGCAAGAAGGCCCCAGAAATGCTACTGTG
TTCTGGGGGCTACAGACCGGAAATACCTTTCCTCCGGAAACTGTGCCGTTCATGTTTTCTTTAG
TGTGGCTGGATGCTTAGTTAAGTCTTAGGGTACTTTCCAGTTATTGTGACAGGATCAGAGTTGG
GTTTAGGGTACATGTTTTTCAGGGGTCCCTTCCTTAATTCTGCTGGGAAGAAAAGAGGCAAGCG
CAAACTTGTCTGTGCCCCTGTCTCCTGACCAGTTCATGTGGAGCTCCCCAGGTGGAGAGCAATG
CGAGCACAGTAAAAACTTGGGACTATTTCTATAACATCTGAGGAGAACATAGAGAAAACTCATC
TATGAGCGAGGAGAGCTGTCCATATTGCTGTGTCTAAAGTACCTTGGCTATTCCAGAGTCCAGA
GTGATGTCAGTTAACCGCGTTCAGTGTTCCGGCCTTAAGGAGGAGAAGTCACGCCCACTAGCCT
GGTGTTAAATCGAGATTTCTCTGTTCATTGGAACAGTCACTAGCATGGAGGTTGATATGGGCAT
CTCCCTCTTTCTCTTCCTCCTTTCATTCCGTGACATCGTCTTGGAAATGCAACATTCGTCGTCC
ATTTGCCCCACCACTGCACACCATGCTTAGGTGGGATTCCTCGGAAAACTAAATCACCCTCAGT
CCTGGCCGTACAGTTTGAATTTGCTTTACGAAATGTCCTTCCCTCTTAGTACCGATAGAAGCTC
GAGACTGGCAACATGTGCCAGTGGCCACGGGTGCCATGATAGGGAGATCCGAATTAATGAGCTC
TCCTCATGTACAGTCTCCACAGTCCAGTGAACTAATAAATATGCTCATAAAGCAATTCGCTAAG
CGGCAAGTGCTGCAGCGTTTCTTCTGCTGAGGGGGAAGCCATAAAGCTCTCATCCATTGCTGCT
GGACTGAAAGACCAATGGGATTTGCTCTTTTTTCTTGGCCCCTTAGATGCCAGAGACACACAAA
TGGGAACGGCAGAGATCTTCACGCTGTCCGTTGAAGTAAGTTTATTAGGCCAACTGTACCAAAA
AGAAAGAACAATGGGACCCACATATAATGCTGACACTCCTGCGGAACTCCCCAGGCAGAGAGGC
CACCTTTCTGTCAAAGCCAGTGAGACATTTTGACAAGGCAGTGGAAACCCAGGACACTAAACCC
CAATAAGAGACCGCGAGGTTGTAACTACATTCCCCTCTAAATACCTGTCTTTCTCTTGATCAGC
TTGTCCAGTGAATTTTTTTTCTTTTGTAAGAATAAAATTAAGAAAAGTCTGTCTGTCCAACATA
TTATTTATTGTAGGGATGGATCTTCTCCCCTTCCCCCTCTCTGGTTTTGAATCTGTTCATATTC
AAGGCATGTTAAACTACCTCATAGGTTTGTCGTGTGGATTAGCTGATTAATAAATAACAACTGA
TTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039094822 ⟹ XP_038950750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	74,671,975 - 75,063,805 (-)	NCBI
mRatBN7.2	16	67,969,410 - 68,361,377 (-)	NCBI

RefSeq Acc Id:

XM_039094823 ⟹ XP_038950751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	74,671,975 - 74,811,373 (-)	NCBI
mRatBN7.2	16	67,969,410 - 68,109,382 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128219	(Get FASTA)	NCBI Sequence Viewer
	XP_038950750	(Get FASTA)	NCBI Sequence Viewer
	XP_038950751	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68220	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043474
	ENSRNOP00000043474.5

RefSeq Acc Id:

NP_001128219 ⟸ NM_001134747

- UniProtKB:

B4F7C6 (UniProtKB/TrEMBL), F1LU08 (UniProtKB/TrEMBL), A6IW38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRAEN
GSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKPPLKTTAAPLTSLKAPRV
DTAPMVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTSLDLGELR
GLRRTYRCTTCSVSLNSIEQYHAHLQGSKHQTNLKNK

hide sequence

Ensembl Acc Id:

ENSRNOP00000043474 ⟸ ENSRNOT00000048602

RefSeq Acc Id:	XP_038950750 ⟸ XM_039094822
- Peptide Label:	isoform X1
- UniProtKB:	F1LU08 (UniProtKB/TrEMBL), B4F7C6 (UniProtKB/TrEMBL), A6IW38 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950751 ⟸ XM_039094823
- Peptide Label:	isoform X2

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LU08-F1-model_v2	AlphaFold	F1LU08	1-229	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584398	AgrOrtholog
BioCyc Gene	G2FUF-10920	BioCyc
Ensembl Genes	ENSRNOG00000042690	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048602	ENTREZGENE
	ENSRNOT00000048602.6	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	ZN346_ZMAT4	UniProtKB/TrEMBL
	Znf_C2H2_jaz	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
	Znf_U1	UniProtKB/TrEMBL
KEGG Report	rno:684961	UniProtKB/TrEMBL
NCBI Gene	684961	ENTREZGENE
PANTHER	ZINC FINGER MATRIN-TYPE PROTEIN 4	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 385B-LIKE	UniProtKB/TrEMBL
Pfam	zf-C2H2_jaz	UniProtKB/TrEMBL
	zf-met	UniProtKB/TrEMBL
PhenoGen	Zmat4	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000042690	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
	ZnF_U1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A6IW38	ENTREZGENE, UniProtKB/TrEMBL
	B4F7C6	ENTREZGENE, UniProtKB/TrEMBL
	F1LU08	ENTREZGENE
UniProt Secondary	F1LU08	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Zmat4	zinc finger, matrin type 4	LOC684961	similar to zinc finger, matrin type 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC684961	similar to zinc finger, matrin type 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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