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Gene: Cxhxorf66 (similar to human chromosome X open reading frame 66) Rattus norvegicus

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Symbol:

Cxhxorf66

Name:

similar to human chromosome X open reading frame 66

RGD ID:

1584124

Description:

Predicted to be located in membrane. Orthologous to human CXorf66 (chromosome X open reading frame 66); INTERACTS WITH bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC688842; LOC688842; uncharacterized protein CXorf66 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	143,815,665 - 143,855,883 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	143,815,342 - 143,855,932 (-)	Ensembl				GRCr8
mRatBN7.2	X	138,779,374 - 138,819,595 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	138,779,382 - 138,785,707 (-)	Ensembl				mRatBN7.2
Rnor_6.0	X	143,554,334 - 143,596,247 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	143,554,441 - 143,558,521 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	143,582,426 - 143,623,550 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	145,966,542 - 145,970,640 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	134,850,165 - 134,890,849 (-)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

bisphenol A (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Cxhxorf66
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	143,815,665 - 143,855,883 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	143,815,342 - 143,855,932 (-)	Ensembl				GRCr8
mRatBN7.2	X	138,779,374 - 138,819,595 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	138,779,382 - 138,785,707 (-)	Ensembl				mRatBN7.2
Rnor_6.0	X	143,554,334 - 143,596,247 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	143,554,441 - 143,558,521 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	143,582,426 - 143,623,550 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	145,966,542 - 145,970,640 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	134,850,165 - 134,890,849 (-)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

CXorf66
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	139,955,728 - 139,965,521 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	139,955,728 - 139,965,521 (-)	Ensembl			hg38	GRCh38
GRCh37	X	139,037,887 - 139,047,680 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	138,865,550 - 138,875,345 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	139,405,526 - 139,415,319 (-)	NCBI		Celera
Cytogenetic Map	X	q27.1	NCBI
HuRef	X	128,305,293 - 128,306,307 (-)	NCBI		HuRef
CHM1_1	X	138,948,920 - 138,958,713 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	138,267,667 - 138,277,460 (-)	NCBI		T2T-CHM13v2.0

Gm7073
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	59,481,236 - 59,502,437 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	59,481,241 - 59,502,437 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	60,436,047 - 60,456,195 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	60,436,052 - 60,539,249 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	57,689,227 - 57,709,370 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	57,689,227 - 57,709,370 (-)	NCBI		MGSCv36	mm8
Celera	X	46,876,077 - 46,896,791 (-)	NCBI		Celera
Cytogenetic Map	X	A6	NCBI
cM Map	X	33.5	NCBI

CUNHXorf66
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955489	5,318,531 - 5,327,883 (+)	NCBI	ChiLan1.0	ChiLan1.0

CXHXorf66
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	139,404,496 - 139,415,405 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	139,408,098 - 139,419,007 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	129,106,870 - 129,116,750 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	139,356,755 - 139,366,559 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	139,356,748 - 139,366,612 (-)	Ensembl			panPan2	panpan1.1

CXHXorf66
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	109,898,857 - 109,902,202 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	109,899,034 - 109,902,143 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	95,726,035 - 95,729,379 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	111,887,012 - 111,890,356 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	111,887,152 - 111,890,297 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	109,019,147 - 109,022,491 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	111,203,804 - 111,207,149 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	110,883,266 - 110,886,610 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CXHXorf66
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	107,946,213 - 107,950,539 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936513	7,664,110 - 7,668,227 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CXHXorf66
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	114,596,809 - 114,602,521 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	130,868,310 - 130,872,289 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CXHXorf66
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	115,037,556 - 115,047,635 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	115,037,727 - 115,047,390 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	52,772,529 - 52,782,385 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNHXorf66
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624808	6,752,961 - 6,756,556 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

CXHXorf66
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	119,484,173 - 119,497,007 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cxhxorf66
92 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	19
Count of miRNA genes:	18
Interacting mature miRNAs:	19
Transcripts:	ENSRNOT00000056598
Prediction methods:	Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	118973754	157758123	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

appendage	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
1	4	1	2	1	1	1	3	1	4	19	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001068529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002727684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056598 ⟹ ENSRNOP00000053437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	143,815,342 - 143,855,932 (-)	Ensembl
mRatBN7.2 Ensembl	X	138,779,382 - 138,785,707 (-)	Ensembl
Rnor_6.0 Ensembl	X	143,554,441 - 143,558,521 (-)	Ensembl

RefSeq Acc Id:

XM_006257600 ⟹ XP_006257662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	143,815,665 - 143,822,022 (-)	NCBI
mRatBN7.2	X	138,779,374 - 138,785,727 (-)	NCBI
Rnor_6.0	X	143,554,334 - 143,560,954 (-)	NCBI
Rnor_5.0	X	143,582,426 - 143,623,550 (-)	NCBI

Sequence:

show sequence

CAAATAAGATACAGCAGTAACCTTAGCCAAAGAAACATTTCAGCCACACTCTGGCTATGAAGGT
TCATATTTATGTCTTATTCTTGTCCATTTGGACAATAAATTGTTTAGATAGAAACCAAACTAAC
GAATCATCTACTGCTACTACTGCCAATACTACAGTTGAAATCGTTGAATCAACAGGAGCAAAAT
TGGATGATTTTAGAAAACGCCTTCTCGGTTTCATAGTTGGAATTATGATCATAGCCTTCACCTT
TACCTGTTTCTGTCTACTCCATTATAACTGTATGGTTGAGGAGGTCCAGTCACCAGGAGGGCTC
AACAAAGAAAATATGGCAGCTATATCATCATGGGTGTCCAAAGTATCAGCATGTCAACCTGATA
TGATAACTGAGGACATTCTAGAAGCTCAACCTCTGCTATTCAATTCAGACCAACTATCTGGGCC
CTCATGTCAAGAGAAACATCTCATATCAAACAATATAGTAAAATCAATTCAGCCTTCAAGTCTA
GAAAAGTCATGCATACCATCCAATGTACAAAAAACCACAAAATACATAAATATAGAAAAGTCAT
CTACATCATGCAGTCCAAAACCTTCAAATAGACTGTTAGAGTCAAAAAGGTCAATTAAGTCATC
AGACCCCAAAAGATTACATAAGTCATCTCACATGGAAAGGACATGTAAGAAACACAACATTAAA
AAGTCACAGAAGATCACCCATGGCTATAAATTAGGTAACGTCAATTCATCCTGTTCAGATAAGC
AAGTAACACCTTGGCTAGCTGTTCTGAAAACTTCAACTAAGCAAATCACACAATCATCTTCTTC
AATCCCATGTAAGCAAAGCACATTCACCAAACCATGCAGAATAAGGAAACCCAACCTGCCATAT
GGACATTATGAGGTAAAAAGGCCAGCGAATAGAGGAAAAACTTTGTTTCCCAAGCCTACAGCAG
CCAAAACTTGCCGACATTATAAGGAGAGATGCCTTGTGTGCAATACTTCTGGATTTCTTCTCAA
TGACCTTTCAGGGGCAGAGAAAAACCATGCTGGAAATATTTGTGGCTCAATGAAAATGAAGCCA
TGTCTCCACACTTTCTATGATACAGAATACAAGTACAATTATTATCAGAAGAGTGTGAGCAATG
ATACTATGAAAATGTATGATAGTGAAGACAGTAACGCAGAGATAGTCATTATTTGTGACACAAG
TCAAGATGATATCACAAATAAAGGAACCTTCCGATATTAAGGACTTAAAACAAATTGATCTACA
TACACAATATCCACATGTAATCAGTATCAAGTAAAGAGCTATTTATCTCTAAGGTAATTAAATT
C

hide sequence

RefSeq Acc Id:

XM_006257601 ⟹ XP_006257663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	143,815,665 - 143,822,022 (-)	NCBI
mRatBN7.2	X	138,779,374 - 138,785,727 (-)	NCBI
Rnor_6.0	X	143,554,334 - 143,560,954 (-)	NCBI
Rnor_5.0	X	143,582,426 - 143,623,550 (-)	NCBI

Sequence:

show sequence

CAAATAAGATACAGCAGTAACCTTAGCCAAAGAAACATTTCAGCCACACTCTGGCTATGAAGGT
TCATATTTATGTCTTATTCTTGTCCATTTGGACAATAAATTGTTTAGATAGAAACCAAACTAAC
GAATCATCTACTGCTACTACTGCCAATACTACAGGAGCAAAATTGGATGATTTTAGAAAACGCC
TTCTCGGTTTCATAGTTGGAATTATGATCATAGCCTTCACCTTTACCTGTTTCTGTCTACTCCA
TTATAACTGTATGGTTGAGGAGGTCCAGTCACCAGGAGGGCTCAACAAAGAAAATATGGCAGCT
ATATCATCATGGGTGTCCAAAGTATCAGCATGTCAACCTGATATGATAACTGAGGACATTCTAG
AAGCTCAACCTCTGCTATTCAATTCAGACCAACTATCTGGGCCCTCATGTCAAGAGAAACATCT
CATATCAAACAATATAGTAAAATCAATTCAGCCTTCAAGTCTAGAAAAGTCATGCATACCATCC
AATGTACAAAAAACCACAAAATACATAAATATAGAAAAGTCATCTACATCATGCAGTCCAAAAC
CTTCAAATAGACTGTTAGAGTCAAAAAGGTCAATTAAGTCATCAGACCCCAAAAGATTACATAA
GTCATCTCACATGGAAAGGACATGTAAGAAACACAACATTAAAAAGTCACAGAAGATCACCCAT
GGCTATAAATTAGGTAACGTCAATTCATCCTGTTCAGATAAGCAAGTAACACCTTGGCTAGCTG
TTCTGAAAACTTCAACTAAGCAAATCACACAATCATCTTCTTCAATCCCATGTAAGCAAAGCAC
ATTCACCAAACCATGCAGAATAAGGAAACCCAACCTGCCATATGGACATTATGAGGTAAAAAGG
CCAGCGAATAGAGGAAAAACTTTGTTTCCCAAGCCTACAGCAGCCAAAACTTGCCGACATTATA
AGGAGAGATGCCTTGTGTGCAATACTTCTGGATTTCTTCTCAATGACCTTTCAGGGGCAGAGAA
AAACCATGCTGGAAATATTTGTGGCTCAATGAAAATGAAGCCATGTCTCCACACTTTCTATGAT
ACAGAATACAAGTACAATTATTATCAGAAGAGTGTGAGCAATGATACTATGAAAATGTATGATA
GTGAAGACAGTAACGCAGAGATAGTCATTATTTGTGACACAAGTCAAGATGATATCACAAATAA
AGGAACCTTCCGATATTAAGGACTTAAAACAAATTGATCTACATACACAATATCCACATGTAAT
CAGTATCAAGTAAAGAGCTATTTATCTCTAAGGTAATTAAATTC

hide sequence

RefSeq Acc Id:

XM_006257602 ⟹ XP_006257664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	143,815,665 - 143,855,883 (-)	NCBI
mRatBN7.2	X	138,779,374 - 138,819,595 (-)	NCBI
Rnor_6.0	X	143,554,334 - 143,596,247 (-)	NCBI
Rnor_5.0	X	143,582,426 - 143,623,550 (-)	NCBI

Sequence:

show sequence

TGGGCAGAGCCTTGGATCCTGACAGCGTGATTAACAGTAACACTGGTACGGGGCCTGGCTACAG
GAAGAGTTAGAATAGGATGCAAATTCTAACCTAAGTGAGCAGGACCACTAGAATATATCAGGAC
GTGGCTGAGCGGCTTGTGAGTTGAAATCGTTGAATCAACAGGAGCAAAATTGGATGATTTTAGA
AAACGCCTTCTCGGTTTCATAGTTGGAATTATGATCATAGCCTTCACCTTTACCTGTTTCTGTC
TACTCCATTATAACTGTATGGTTGAGGAGGTCCAGTCACCAGGAGGGCTCAACAAAGAAAATAT
GGCAGCTATATCATCATGGGTGTCCAAAGTATCAGCATGTCAACCTGATATGATAACTGAGGAC
ATTCTAGAAGCTCAACCTCTGCTATTCAATTCAGACCAACTATCTGGGCCCTCATGTCAAGAGA
AACATCTCATATCAAACAATATAGTAAAATCAATTCAGCCTTCAAGTCTAGAAAAGTCATGCAT
ACCATCCAATGTACAAAAAACCACAAAATACATAAATATAGAAAAGTCATCTACATCATGCAGT
CCAAAACCTTCAAATAGACTGTTAGAGTCAAAAAGGTCAATTAAGTCATCAGACCCCAAAAGAT
TACATAAGTCATCTCACATGGAAAGGACATGTAAGAAACACAACATTAAAAAGTCACAGAAGAT
CACCCATGGCTATAAATTAGGTAACGTCAATTCATCCTGTTCAGATAAGCAAGTAACACCTTGG
CTAGCTGTTCTGAAAACTTCAACTAAGCAAATCACACAATCATCTTCTTCAATCCCATGTAAGC
AAAGCACATTCACCAAACCATGCAGAATAAGGAAACCCAACCTGCCATATGGACATTATGAGGT
AAAAAGGCCAGCGAATAGAGGAAAAACTTTGTTTCCCAAGCCTACAGCAGCCAAAACTTGCCGA
CATTATAAGGAGAGATGCCTTGTGTGCAATACTTCTGGATTTCTTCTCAATGACCTTTCAGGGG
CAGAGAAAAACCATGCTGGAAATATTTGTGGCTCAATGAAAATGAAGCCATGTCTCCACACTTT
CTATGATACAGAATACAAGTACAATTATTATCAGAAGAGTGTGAGCAATGATACTATGAAAATG
TATGATAGTGAAGACAGTAACGCAGAGATAGTCATTATTTGTGACACAAGTCAAGATGATATCA
CAAATAAAGGAACCTTCCGATATTAAGGACTTAAAACAAATTGATCTACATACACAATATCCAC
ATGTAATCAGTATCAAGTAAAGAGCTATTTATCTCTAAGGTAATTAAATTC

hide sequence

RefSeq Acc Id:

XM_006257603 ⟹ XP_006257665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	143,815,665 - 143,855,883 (-)	NCBI
mRatBN7.2	X	138,779,374 - 138,819,595 (-)	NCBI
Rnor_6.0	X	143,554,334 - 143,596,247 (-)	NCBI
Rnor_5.0	X	143,582,426 - 143,623,550 (-)	NCBI

Sequence:

show sequence

TGGGCAGAGCCTTGGATCCTGACAGCGTGATTAACAGTAACACTGGTACGGGGCCTGGCTACAG
GAAGAGTTAGAATAGGATGCAAATTCTAACCTAAGTGAGCAGGACCACTAGAATATATCAGGAC
GTGGCTGAGCGGCTTGTGAGGAGCAAAATTGGATGATTTTAGAAAACGCCTTCTCGGTTTCATA
GTTGGAATTATGATCATAGCCTTCACCTTTACCTGTTTCTGTCTACTCCATTATAACTGTATGG
TTGAGGAGGTCCAGTCACCAGGAGGGCTCAACAAAGAAAATATGGCAGCTATATCATCATGGGT
GTCCAAAGTATCAGCATGTCAACCTGATATGATAACTGAGGACATTCTAGAAGCTCAACCTCTG
CTATTCAATTCAGACCAACTATCTGGGCCCTCATGTCAAGAGAAACATCTCATATCAAACAATA
TAGTAAAATCAATTCAGCCTTCAAGTCTAGAAAAGTCATGCATACCATCCAATGTACAAAAAAC
CACAAAATACATAAATATAGAAAAGTCATCTACATCATGCAGTCCAAAACCTTCAAATAGACTG
TTAGAGTCAAAAAGGTCAATTAAGTCATCAGACCCCAAAAGATTACATAAGTCATCTCACATGG
AAAGGACATGTAAGAAACACAACATTAAAAAGTCACAGAAGATCACCCATGGCTATAAATTAGG
TAACGTCAATTCATCCTGTTCAGATAAGCAAGTAACACCTTGGCTAGCTGTTCTGAAAACTTCA
ACTAAGCAAATCACACAATCATCTTCTTCAATCCCATGTAAGCAAAGCACATTCACCAAACCAT
GCAGAATAAGGAAACCCAACCTGCCATATGGACATTATGAGGTAAAAAGGCCAGCGAATAGAGG
AAAAACTTTGTTTCCCAAGCCTACAGCAGCCAAAACTTGCCGACATTATAAGGAGAGATGCCTT
GTGTGCAATACTTCTGGATTTCTTCTCAATGACCTTTCAGGGGCAGAGAAAAACCATGCTGGAA
ATATTTGTGGCTCAATGAAAATGAAGCCATGTCTCCACACTTTCTATGATACAGAATACAAGTA
CAATTATTATCAGAAGAGTGTGAGCAATGATACTATGAAAATGTATGATAGTGAAGACAGTAAC
GCAGAGATAGTCATTATTTGTGACACAAGTCAAGATGATATCACAAATAAAGGAACCTTCCGAT
ATTAAGGACTTAAAACAAATTGATCTACATACACAATATCCACATGTAATCAGTATCAAGTAAA
GAGCTATTTATCTCTAAGGTAATTAAATTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001419945	(Get FASTA)	NCBI Sequence Viewer
	NP_001419946	(Get FASTA)	NCBI Sequence Viewer
	NP_001419947	(Get FASTA)	NCBI Sequence Viewer
	NP_001419948	(Get FASTA)	NCBI Sequence Viewer
	XP_006257662	(Get FASTA)	NCBI Sequence Viewer
	XP_006257663	(Get FASTA)	NCBI Sequence Viewer
	XP_006257664	(Get FASTA)	NCBI Sequence Viewer
	XP_006257665	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053437.5

RefSeq Acc Id:

XP_006257665 ⟸ XM_006257603

- Peptide Label:

isoform X3

- Sequence:

show sequence

MIIAFTFTCFCLLHYNCMVEEVQSPGGLNKENMAAISSWVSKVSACQPDMITEDILEAQPLLFN
SDQLSGPSCQEKHLISNNIVKSIQPSSLEKSCIPSNVQKTTKYINIEKSSTSCSPKPSNRLLES
KRSIKSSDPKRLHKSSHMERTCKKHNIKKSQKITHGYKLGNVNSSCSDKQVTPWLAVLKTSTKQ
ITQSSSSIPCKQSTFTKPCRIRKPNLPYGHYEVKRPANRGKTLFPKPTAAKTCRHYKERCLVCN
TSGFLLNDLSGAEKNHAGNICGSMKMKPCLHTFYDTEYKYNYYQKSVSNDTMKMYDSEDSNAEI
VIICDTSQDDITNKGTFRY

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RefSeq Acc Id:

XP_006257664 ⟸ XM_006257602

- Peptide Label:

isoform X3

- Sequence:

show sequence

MIIAFTFTCFCLLHYNCMVEEVQSPGGLNKENMAAISSWVSKVSACQPDMITEDILEAQPLLFN
SDQLSGPSCQEKHLISNNIVKSIQPSSLEKSCIPSNVQKTTKYINIEKSSTSCSPKPSNRLLES
KRSIKSSDPKRLHKSSHMERTCKKHNIKKSQKITHGYKLGNVNSSCSDKQVTPWLAVLKTSTKQ
ITQSSSSIPCKQSTFTKPCRIRKPNLPYGHYEVKRPANRGKTLFPKPTAAKTCRHYKERCLVCN
TSGFLLNDLSGAEKNHAGNICGSMKMKPCLHTFYDTEYKYNYYQKSVSNDTMKMYDSEDSNAEI
VIICDTSQDDITNKGTFRY

hide sequence

RefSeq Acc Id:

XP_006257663 ⟸ XM_006257601

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKVHIYVLFLSIWTINCLDRNQTNESSTATTANTTGAKLDDFRKRLLGFIVGIMIIAFTFTCFC
LLHYNCMVEEVQSPGGLNKENMAAISSWVSKVSACQPDMITEDILEAQPLLFNSDQLSGPSCQE
KHLISNNIVKSIQPSSLEKSCIPSNVQKTTKYINIEKSSTSCSPKPSNRLLESKRSIKSSDPKR
LHKSSHMERTCKKHNIKKSQKITHGYKLGNVNSSCSDKQVTPWLAVLKTSTKQITQSSSSIPCK
QSTFTKPCRIRKPNLPYGHYEVKRPANRGKTLFPKPTAAKTCRHYKERCLVCNTSGFLLNDLSG
AEKNHAGNICGSMKMKPCLHTFYDTEYKYNYYQKSVSNDTMKMYDSEDSNAEIVIICDTSQDDI
TNKGTFRY

hide sequence

RefSeq Acc Id:

XP_006257662 ⟸ XM_006257600

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKVHIYVLFLSIWTINCLDRNQTNESSTATTANTTVEIVESTGAKLDDFRKRLLGFIVGIMIIA
FTFTCFCLLHYNCMVEEVQSPGGLNKENMAAISSWVSKVSACQPDMITEDILEAQPLLFNSDQL
SGPSCQEKHLISNNIVKSIQPSSLEKSCIPSNVQKTTKYINIEKSSTSCSPKPSNRLLESKRSI
KSSDPKRLHKSSHMERTCKKHNIKKSQKITHGYKLGNVNSSCSDKQVTPWLAVLKTSTKQITQS
SSSIPCKQSTFTKPCRIRKPNLPYGHYEVKRPANRGKTLFPKPTAAKTCRHYKERCLVCNTSGF
LLNDLSGAEKNHAGNICGSMKMKPCLHTFYDTEYKYNYYQKSVSNDTMKMYDSEDSNAEIVIIC
DTSQDDITNKGTFRY

hide sequence

Ensembl Acc Id:

ENSRNOP00000053437 ⟸ ENSRNOT00000056598

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZLZ3-F1-model_v2	AlphaFold	D3ZLZ3	1-334	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584124	AgrOrtholog
BioCyc Gene	G2FUF-872	BioCyc
Ensembl Genes	ENSRNOG00000037399	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056598.5	UniProtKB/TrEMBL
InterPro	CXorf66	UniProtKB/TrEMBL
KEGG Report	rno:688842	UniProtKB/TrEMBL
NCBI Gene	688842	ENTREZGENE
PANTHER	GENE 7073-RELATED	UniProtKB/TrEMBL
	PTHR37340	UniProtKB/TrEMBL
PhenoGen	Cxhxorf66	PhenoGen
RatGTEx	ENSRNOG00000037399	RatGTEx
UniProt	D3ZLZ3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-01-03	Cxhxorf66	similar to human chromosome X open reading frame 66	LOC688842	hypothetical protein LOC688842	Name and Symbol changed	629549	APPROVED
2008-01-09	LOC688842	hypothetical protein LOC688842	LOC679106	hypothetical protein LOC679106	Data merged from RGD:1591886	1643240	APPROVED
2006-11-20	LOC679106	hypothetical protein LOC679106			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC688842	hypothetical protein LOC688842			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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