Dynll1l (dynein light chain LC8-type 1 like) - Rat Genome Database

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Gene: Dynll1l (dynein light chain LC8-type 1 like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Dynll1l (Ensembl: LOC679822)
Name: dynein light chain LC8-type 1 like (Ensembl:similar to dynein, cytoplasmic, light peptide)
RGD ID: 1583666
Description: Predicted to be located in cilium; cytoplasm; and microtubule.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: dynein light chain 1, cytoplasmic-like; LOC679822; similar to dynein, cytoplasmic, light peptide
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,999,969 - 2,000,645 (+)NCBIGRCr8
mRatBN7.2101,492,788 - 1,493,464 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl101,492,893 - 1,493,171 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0101,404,877 - 1,407,828 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl101,406,486 - 1,406,764 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010301,997 - 304,091 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,842,891 - 1,843,160 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10552,643 - 555,594 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Dynll1l
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 9 23 7 18 7 7 7 9 9 7 10 7
Below cutoff 2 3 3 1 3 1 1 1 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000078773   ⟹   ENSRNOP00000069848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl101,492,893 - 1,493,171 (+)Ensembl
Rnor_6.0 Ensembl101,406,486 - 1,406,764 (+)Ensembl
RefSeq Acc Id: XM_039087013   ⟹   XP_038942941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,492,902 - 1,493,171 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000069848.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000069848   ⟸   ENSRNOT00000078773
RefSeq Acc Id: XP_038942941   ⟸   XM_039087013

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JWE4-F1-model_v2 AlphaFold A0A0G2JWE4 1-92 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583666 AgrOrtholog
BioCyc Gene G2FUF-26225 BioCyc
Ensembl Genes ENSRNOG00000061035 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078773.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.740.10 UniProtKB/TrEMBL
InterPro DLC_sf UniProtKB/TrEMBL
  Dynein_light_chain_typ-1/2 UniProtKB/TrEMBL
NCBI Gene 679822 ENTREZGENE
PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC UniProtKB/TrEMBL
  PTHR11886 UniProtKB/TrEMBL
Pfam Dynein_light UniProtKB/TrEMBL
PhenoGen Dynll1l PhenoGen
RatGTEx ENSRNOG00000061035 RatGTEx
SMART Dynein_light UniProtKB/TrEMBL
Superfamily-SCOP SSF54648 UniProtKB/TrEMBL
UniProt A0A0G2JWE4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Dynll1l  dynein light chain LC8-type 1 like  LOC679822  similar to dynein, cytoplasmic, light peptide  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC679822  similar to dynein, cytoplasmic, light peptide      Symbol and Name status set to provisional 70820 PROVISIONAL