Dnajb6-ps4 (DnaJ heat shock protein family (Hsp40) member B6, pseudogene 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dnajb6-ps4 (DnaJ heat shock protein family (Hsp40) member B6, pseudogene 4) Rattus norvegicus
Analyze
Symbol: Dnajb6-ps4
Name: DnaJ heat shock protein family (Hsp40) member B6, pseudogene 4
RGD ID: 1583553
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily B member 6-like; LOC681138; similar to DnaJ (Hsp40) homolog, subfamily B, member 6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8667,024,697 - 67,025,972 (+)NCBIGRCr8
mRatBN7.2661,297,549 - 61,299,049 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0664,192,972 - 64,194,110 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0673,782,186 - 73,782,778 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4663,610,146 - 63,610,962 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera660,294,199 - 60,295,270 (+)NCBICelera
Cytogenetic Map6q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Dnajb6-ps4
21 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_063262630   ⟹   XP_063118700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8667,024,697 - 67,025,972 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063118700 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063118700   ⟸   XM_063262630


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-37691 BioCyc
NCBI Gene 681138 ENTREZGENE
PhenoGen Dnajb6-ps4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Dnajb6-ps4  DnaJ heat shock protein family (Hsp40) member B6, pseudogene 4  LOC681138  similar to DnaJ (Hsp40) homolog, subfamily B, member 6  Symbol and Name Changed 1299863 APPROVED
2008-05-28 LOC681138  similar to DnaJ (Hsp40) homolog, subfamily B, member 6   LOC681138  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  'predicted' is removed from gene name 2292626 APPROVED
2008-01-09 LOC681138  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  LOC687325  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  Data merged from RGD:1586572 1643240 APPROVED
2006-11-19 LOC681138  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687325  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL