Lypd4 (Ly6/Plaur domain containing 4) - Rat Genome Database

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Gene: Lypd4 (Ly6/Plaur domain containing 4) Rattus norvegicus
Analyze
Symbol: Lypd4
Name: Ly6/Plaur domain containing 4
RGD ID: 1583497
Description: Predicted to act upstream of or within binding activity of sperm to zona pellucida and sperm migration through the uterotubal junction. Predicted to be located in plasma membrane. Predicted to be active in acrosomal vesicle and plasma membrane raft. Orthologous to human LYPD4 (LY6/PLAUR domain containing 4); INTERACTS WITH bisphenol A; furan; lead nitrate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100910410; LOC681194; ly6/PLAUR domain-containing protein 4; ly6/PLAUR domain-containing protein 4-like; rCG53718; similar to Ly6/Plaur domain containing 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,588,368 - 89,594,287 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl189,588,368 - 89,593,890 (-)EnsemblGRCr8
mRatBN7.2180,460,487 - 80,466,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,460,487 - 80,466,011 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx185,853,017 - 85,858,541 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,403,857 - 94,409,377 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,608,777 - 87,614,301 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,728,552 - 81,734,286 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,728,552 - 81,733,957 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl916,825,845 - 16,828,349 (+)Ensemblrn6Rnor6.0
Rnor_5.0182,985,823 - 82,991,165 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4180,155,930 - 80,161,479 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera174,909,437 - 74,914,676 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090  


Genomics

Comparative Map Data
Lypd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,588,368 - 89,594,287 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl189,588,368 - 89,593,890 (-)EnsemblGRCr8
mRatBN7.2180,460,487 - 80,466,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,460,487 - 80,466,011 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx185,853,017 - 85,858,541 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,403,857 - 94,409,377 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,608,777 - 87,614,301 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,728,552 - 81,734,286 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,728,552 - 81,733,957 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl916,825,845 - 16,828,349 (+)Ensemblrn6Rnor6.0
Rnor_5.0182,985,823 - 82,991,165 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4180,155,930 - 80,161,479 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera174,909,437 - 74,914,676 (-)NCBICelera
Cytogenetic Map1q21NCBI
LYPD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,835,075 - 41,844,871 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,837,074 - 41,844,697 (-)Ensemblhg38GRCh38
GRCh371942,341,148 - 42,348,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,032,990 - 47,040,348 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1939,140,840 - 39,148,195 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,772,539 - 38,779,881 (-)NCBIHuRef
CHM1_11942,342,611 - 42,349,980 (-)NCBICHM1_1
T2T-CHM13v2.01944,653,180 - 44,664,338 (-)NCBIT2T-CHM13v2.0
Lypd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,564,044 - 24,569,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,564,045 - 24,569,366 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38724,864,617 - 24,869,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,864,620 - 24,869,941 (-)Ensemblmm10GRCm38
MGSCv37725,649,639 - 25,654,710 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36724,573,380 - 24,578,451 (-)NCBIMGSCv36mm8
Celera719,480,522 - 19,485,593 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.3NCBI
Lypd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555989,941 - 994,950 (+)Ensembl
ChiLan1.0NW_004955555989,234 - 994,901 (+)NCBIChiLan1.0ChiLan1.0
LYPD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,940,684 - 47,950,712 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,809,662 - 49,819,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,725,837 - 38,733,460 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,231,778 - 47,239,631 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,231,778 - 47,239,581 (-)EnsemblpanPan2panpan1.1
LYPD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,439,900 - 112,445,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,443,993 - 112,445,932 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1111,876,220 - 111,882,254 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01113,063,836 - 113,069,875 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,067,933 - 113,069,872 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,617,197 - 112,623,235 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,253,145 - 112,259,186 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,179,832 - 113,185,869 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lypd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,228,335 - 16,245,969 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936706591,128 - 593,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,010,558 - 50,023,574 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1650,010,272 - 50,023,571 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,063,827 - 46,076,899 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,045,116 - 36,052,343 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607314,279,835 - 14,282,170 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lypd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907835,135 - 837,071 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624907818,276 - 839,188 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lypd4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12169,834,582 - 169,840,170 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lypd4
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:73
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000027226, ENSRNOT00000074821
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 4 24 10 13 4 6 4 2 25 10 20 3 49 9

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027226   ⟹   ENSRNOP00000027225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl189,588,368 - 89,593,890 (-)Ensembl
mRatBN7.2 Ensembl180,460,487 - 80,466,011 (-)Ensembl
Rnor_6.0 Ensembl181,728,552 - 81,733,957 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074821   ⟹   ENSRNOP00000066538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl916,825,845 - 16,828,349 (+)Ensembl
RefSeq Acc Id: NM_001110295   ⟹   NP_001103765
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,368 - 89,593,890 (-)NCBI
mRatBN7.2180,460,487 - 80,466,011 (-)NCBI
Rnor_6.0181,728,552 - 81,733,957 (-)NCBI
Rnor_5.0182,985,823 - 82,991,165 (-)NCBI
RGSC_v3.4180,155,930 - 80,161,479 (-)RGD
Celera174,909,437 - 74,914,676 (-)RGD
Sequence:
RefSeq Acc Id: XM_008758982   ⟹   XP_008757204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,594,017 (-)NCBI
mRatBN7.2180,460,489 - 80,466,101 (-)NCBI
Rnor_6.0181,728,554 - 81,734,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758983   ⟹   XP_008757205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,426 (-)NCBI
mRatBN7.2180,460,489 - 80,465,526 (-)NCBI
Rnor_6.0181,728,554 - 81,733,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589712   ⟹   XP_017445201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,594,007 (-)NCBI
mRatBN7.2180,460,489 - 80,466,105 (-)NCBI
Rnor_6.0181,728,554 - 81,734,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090589   ⟹   XP_038946517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,974 (-)NCBI
mRatBN7.2180,460,489 - 80,466,099 (-)NCBI
RefSeq Acc Id: XM_063273722   ⟹   XP_063129792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,594,273 (-)NCBI
RefSeq Acc Id: XM_063273723   ⟹   XP_063129793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,381 (-)NCBI
RefSeq Acc Id: XM_063273726   ⟹   XP_063129796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,594,287 (-)NCBI
RefSeq Acc Id: XM_063273733   ⟹   XP_063129803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,982 (-)NCBI
RefSeq Acc Id: XM_063273734   ⟹   XP_063129804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,432 (-)NCBI
RefSeq Acc Id: XM_063273735   ⟹   XP_063129805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,594,273 (-)NCBI
RefSeq Acc Id: XM_063273736   ⟹   XP_063129806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,376 (-)NCBI
RefSeq Acc Id: XM_063273738   ⟹   XP_063129808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,588,370 - 89,593,425 (-)NCBI
RefSeq Acc Id: NP_001103765   ⟸   NM_001110295
- Peptide Label: precursor
- UniProtKB: D3ZHB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757204   ⟸   XM_008758982
- Peptide Label: isoform X1
- UniProtKB: D3ZHB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757205   ⟸   XM_008758983
- Peptide Label: isoform X1
- UniProtKB: D3ZHB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445201   ⟸   XM_017589712
- Peptide Label: isoform X2
- UniProtKB: A6J914 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000027225   ⟸   ENSRNOT00000027226
RefSeq Acc Id: XP_038946517   ⟸   XM_039090589
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000066538   ⟸   ENSRNOT00000074821
RefSeq Acc Id: XP_063129796   ⟸   XM_063273726
- Peptide Label: isoform X1
- UniProtKB: D3ZHB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129805   ⟸   XM_063273735
- Peptide Label: isoform X2
- UniProtKB: A6J914 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129792   ⟸   XM_063273722
- Peptide Label: isoform X1
- UniProtKB: D3ZHB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129803   ⟸   XM_063273733
- Peptide Label: isoform X2
- UniProtKB: A6J914 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129804   ⟸   XM_063273734
- Peptide Label: isoform X2
- UniProtKB: A6J914 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129808   ⟸   XM_063273738
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129793   ⟸   XM_063273723
- Peptide Label: isoform X1
- UniProtKB: D3ZHB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129806   ⟸   XM_063273736
- Peptide Label: isoform X2
- UniProtKB: A6J914 (UniProtKB/TrEMBL)
Protein Domains
UPAR/Ly6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHB4-F1-model_v2 AlphaFold D3ZHB4 1-246 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689805
Promoter ID:EPDNEW_R330
Type:initiation region
Name:Lypd4_1
Description:Ly6/Plaur domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0181,733,927 - 81,733,987EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583497 AgrOrtholog
BioCyc Gene G2FUF-60414 BioCyc
Ensembl Genes ENSRNOG00000020098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000045544 Ensembl
Ensembl Transcript ENSRNOT00000027226 ENTREZGENE
  ENSRNOT00000027226.7 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro Fert-Immune_med_protein UniProtKB/TrEMBL
  LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene 681194 ENTREZGENE
PANTHER CD177 ANTIGEN UniProtKB/TrEMBL
  LY6/PLAUR DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  LY6_PLAUR DOMAIN CONTAINING 10-RELATED UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
PhenoGen Lypd4 PhenoGen
RatGTEx ENSRNOG00000020098 RatGTEx
  ENSRNOG00000045544 RatGTEx
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A6J914 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHB4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Lypd4  Ly6/Plaur domain containing 4  LOC100910410  ly6/PLAUR domain-containing protein 4-like  Data merged from RGD:6498582 737654 APPROVED
2012-07-05 LOC100910410  ly6/PLAUR domain-containing protein 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-05 Lypd4  Ly6/Plaur domain containing 4  LOC681194  similar to Ly6/Plaur domain containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC681194  similar to Ly6/Plaur domain containing 4      Symbol and Name status set to provisional 70820 PROVISIONAL