Rps25l3 (ribosomal protein S25 like 3) - Rat Genome Database

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Gene: Rps25l3 (ribosomal protein S25 like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps25l3
Name: ribosomal protein S25 like 3
RGD ID: 1583218
Description: Predicted to be a structural constituent of ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS25 (ribosomal protein S25).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S25-like; LOC100911337; LOC685085; similar to 40S ribosomal protein S25; small ribosomal subunit protein eS25-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84122,491,009 - 122,491,527 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4122,490,916 - 122,491,506 (-)EnsemblGRCr8
GRCr8 Ensembl8109,453,858 - 109,454,286 (-)EnsemblGRCr8
mRatBN7.24120,933,765 - 120,934,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,574,894 - 100,575,268 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl4120,933,562 - 120,934,236 (-)EnsemblmRatBN7.2
Rnor_6.04120,040,765 - 120,041,256 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4120,040,772 - 120,041,238 (-)Ensemblrn6Rnor6.0
Rnor_5.04185,285,012 - 185,285,506 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44122,558,191 - 122,558,568 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4109,889,655 - 109,890,032 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rps25l3
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 51 67 138 95 11 50 36 32 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000040710   ⟹   ENSRNOP00000047391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8109,453,858 - 109,454,286 (-)Ensembl
mRatBN7.2 Ensembl8100,574,894 - 100,575,268 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000073799   ⟹   ENSRNOP00000065281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4120,040,772 - 120,041,238 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099455   ⟹   ENSRNOP00000090300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4122,490,916 - 122,491,506 (-)Ensembl
mRatBN7.2 Ensembl4120,933,562 - 120,934,236 (-)Ensembl
RefSeq Acc Id: XM_039108732   ⟹   XP_038964660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84122,491,009 - 122,491,527 (-)NCBI
mRatBN7.24120,933,765 - 120,934,259 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001418811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964660 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA44349 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000047391.4
  ENSRNOP00000090300
  ENSRNOP00000090300.1
Ensembl Acc Id: ENSRNOP00000065281   ⟸   ENSRNOT00000073799
RefSeq Acc Id: XP_038964660   ⟸   XM_039108732
Ensembl Acc Id: ENSRNOP00000090300   ⟸   ENSRNOT00000099455
Ensembl Acc Id: ENSRNOP00000047391   ⟸   ENSRNOT00000040710

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R763-F1-model_v2 AlphaFold M0R763 1-125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583218 AgrOrtholog
BioCyc Gene G2FUF-43811 BioCyc
Ensembl Genes ENSRNOG00000031703 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000059069 Ensembl
  ENSRNOG00000062325 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040710.5 UniProtKB/TrEMBL
  ENSRNOT00000099455 ENTREZGENE
  ENSRNOT00000099455.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Ribosomal_S25 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 685085 ENTREZGENE
PANTHER PTHR12850 UniProtKB/TrEMBL
Pfam Ribosomal_S25 UniProtKB/TrEMBL
PhenoGen Rps25l3 PhenoGen
RatGTEx ENSRNOG00000031703 RatGTEx
  ENSRNOG00000059069 RatGTEx
  ENSRNOG00000062325 RatGTEx
UniProt F1M6F4 ENTREZGENE, UniProtKB/TrEMBL
  M0R763 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps25l3  ribosomal protein S25 like 3  LOC685085  similar to 40S ribosomal protein S25  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC685085  similar to 40S ribosomal protein S25  LOC100911337  40S ribosomal protein S25-like  Data merged from RGD:6493463 737654 PROVISIONAL
2012-07-05 LOC100911337  40S ribosomal protein S25-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685085  similar to 40S ribosomal protein S25  LOC686426  similar to 40S ribosomal protein S25  Data merged from RGD:1597658 1643240 APPROVED
2006-11-20 LOC686426  similar to 40S ribosomal protein S25      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685085  similar to 40S ribosomal protein S25      Symbol and Name status set to provisional 70820 PROVISIONAL