Rps26l4 (ribosomal protein S26 like 4) - Rat Genome Database

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Gene: Rps26l4 (ribosomal protein S26 like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps26l4 (Ensembl: AC126292.3)
Name: ribosomal protein S26 like 4
RGD ID: 1582959
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS26P11 (ribosomal protein S26 pseudogene 11).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S26-like; LOC688948; similar to ribosomal protein S26; small ribosomal subunit protein eS26-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85135,475,815 - 135,476,219 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5135,475,800 - 135,476,220 (-)EnsemblGRCr8
mRatBN7.25130,239,204 - 130,239,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,822,178 - 107,822,525 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5130,239,228 - 130,239,575 (-)EnsemblmRatBN7.2
Rnor_6.05135,628,379 - 135,628,765 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05139,424,762 - 139,425,235 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45137,068,120 - 137,068,467 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5128,766,178 - 128,766,564 (-)NCBICelera
Cytogenetic Map5q35NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rps26l4
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5130678987145274255Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133308734140009902Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
6 2 15 20 43 22 22 15 2 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000079236   ⟹   ENSRNOP00000070534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5135,475,800 - 135,476,220 (-)Ensembl
mRatBN7.2 Ensembl5130,239,228 - 130,239,575 (-)Ensembl
RefSeq Acc Id: XM_039111514   ⟹   XP_038967442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85135,475,815 - 135,476,219 (-)NCBI
mRatBN7.25130,239,204 - 130,239,590 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038967442 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048116.2
  ENSRNOP00000070534
  ENSRNOP00000070534.1
RefSeq Acc Id: XP_038967442   ⟸   XM_039111514
- UniProtKB: A0A0G2JY64 (UniProtKB/TrEMBL),   D3Z8D7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000070534   ⟸   ENSRNOT00000079236

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JY64-F1-model_v2 AlphaFold A0A0G2JY64 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1582959 AgrOrtholog
BioCyc Gene G2FUF-40238 BioCyc
Ensembl Genes ENSRNOG00000029512 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000056532 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051134.3 UniProtKB/TrEMBL
  ENSRNOT00000079236 ENTREZGENE
  ENSRNOT00000079236.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1740.20 UniProtKB/TrEMBL
InterPro Ribosomal_eS26_CS UniProtKB/TrEMBL
  Ribosomal_S26e UniProtKB/TrEMBL
  Ribosomal_S26e_sf UniProtKB/TrEMBL
NCBI Gene 688948 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S26-RELATED UniProtKB/TrEMBL
  PTHR12538 UniProtKB/TrEMBL
Pfam Ribosomal_S26e UniProtKB/TrEMBL
PhenoGen Rps26l4 PhenoGen
PROSITE RIBOSOMAL_S26E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029512 RatGTEx
  ENSRNOG00000056532 RatGTEx
UniProt A0A0G2JY64 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8D7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps26l4  ribosomal protein S26 like 4  LOC688948  similar to ribosomal protein S26  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC688948  similar to ribosomal protein S26  LOC683863  similar to ribosomal protein S26  Data merged from RGD:1597816 1643240 APPROVED
2006-11-20 LOC683863  similar to ribosomal protein S26      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688948  similar to ribosomal protein S26      Symbol and Name status set to provisional 70820 PROVISIONAL