1700013G24Rikl (RIKEN cDNA 1700013G24 gene like) - Rat Genome Database

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Gene: 1700013G24Rikl (RIKEN cDNA 1700013G24 gene like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 1700013G24Rikl (Ensembl: LOC690206)
Name: RIKEN cDNA 1700013G24 gene like (Ensembl:RIKEN cDNA 1700013G24 gene)
RGD ID: 1582902
Description:
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC690206; LOC690206; uncharacterized protein LOC690206
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,942,522 - 154,946,330 (+)NCBIGRCr8
mRatBN7.25149,659,136 - 149,662,944 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5149,659,122 - 149,662,945 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5152,355,568 - 152,358,336 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05154,129,869 - 154,132,637 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05154,111,871 - 154,114,642 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05155,794,229 - 155,797,614 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,794,229 - 155,797,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,551,158 - 159,554,136 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45156,209,107 - 156,212,465 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5148,056,002 - 148,058,917 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in 1700013G24Rikl
28 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:49
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000018127
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low 1 1 1 1 1
Below cutoff 1 17 16 2 16 2 4 4 8 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000018127   ⟹   ENSRNOP00000018127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5149,659,122 - 149,662,945 (+)Ensembl
Rnor_6.0 Ensembl5155,794,229 - 155,797,614 (+)Ensembl
RefSeq Acc Id: NM_001109567   ⟹   NP_001103037
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85154,942,522 - 154,946,330 (+)NCBI
mRatBN7.25149,659,136 - 149,662,944 (+)NCBI
Rnor_6.05155,794,229 - 155,797,614 (+)NCBI
Rnor_5.05159,551,158 - 159,554,136 (+)NCBI
RGSC_v3.45156,209,107 - 156,212,465 (+)RGD
Celera5148,056,002 - 148,058,917 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001103037 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL80839 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018127
  ENSRNOP00000018127.2
Reference Protein Sequences
RefSeq Acc Id: NP_001103037   ⟸   NM_001109567
- UniProtKB: D3ZYU7 (UniProtKB/TrEMBL),   A6ITD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000018127   ⟸   ENSRNOT00000018127

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYU7-F1-model_v2 AlphaFold D3ZYU7 1-286 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694179
Promoter ID:EPDNEW_R4704
Type:initiation region
Name:LOC690206_1
Description:hypothetical protein LOC690206
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05155,794,232 - 155,794,292EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1582902 AgrOrtholog
BioCyc Gene G2FUF-39477 BioCyc
Ensembl Genes ENSRNOG00000013566 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018127 ENTREZGENE
  ENSRNOT00000018127.4 UniProtKB/TrEMBL
KEGG Report rno:690206 UniProtKB/TrEMBL
NCBI Gene 690206 ENTREZGENE
PANTHER RIKEN CDNA 1700013G24 GENE UniProtKB/TrEMBL
  RIKEN CDNA 1700013G24 GENE UniProtKB/TrEMBL
PhenoGen 1700013G24Rikl PhenoGen
RatGTEx ENSRNOG00000013566 RatGTEx
UniProt A6ITD8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYU7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 1700013G24Rikl  RIKEN cDNA 1700013G24 gene like  LOC690206  hypothetical protein LOC690206  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC690206  hypothetical protein LOC690206  LOC684332  hypothetical protein LOC684332  Data merged from RGD:1591480 1643240 APPROVED
2006-11-20 LOC684332  hypothetical protein LOC684332      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC690206  hypothetical protein LOC690206      Symbol and Name status set to provisional 70820 PROVISIONAL