Tex28 (testis expressed 28) - Rat Genome Database

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Gene: Tex28 (testis expressed 28) Rattus norvegicus
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Symbol: Tex28
Name: testis expressed 28
RGD ID: 1582832
Description: Predicted to be located in membrane. Predicted to be active in endomembrane system. Orthologous to human TEX28 (testis expressed 28); INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102551117; LOC690282; similar to chromosome X open reading frame 2; testis expressed gene 28; testis-specific protein TEX28; testis-specific protein TEX28-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,076,824 - 157,110,988 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX157,076,609 - 157,093,768 (-)EnsemblGRCr8
mRatBN7.2X151,922,210 - 151,955,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,925,526 - 151,954,567 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX154,066,877 - 154,086,795 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,630,113 - 157,650,031 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,301,917 - 155,321,829 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,540,442 - 156,569,272 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,552,528 - 156,569,249 (+)Ensemblrn6Rnor6.0
Rnor_5.01152,281,481 - 152,310,052 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X160,116,400 - 160,136,308 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1135,949,460 - 135,969,368 (+)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tex28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,076,824 - 157,110,988 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX157,076,609 - 157,093,768 (-)EnsemblGRCr8
mRatBN7.2X151,922,210 - 151,955,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,925,526 - 151,954,567 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX154,066,877 - 154,086,795 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,630,113 - 157,650,031 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,301,917 - 155,321,829 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,540,442 - 156,569,272 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,552,528 - 156,569,249 (+)Ensemblrn6Rnor6.0
Rnor_5.01152,281,481 - 152,310,052 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X160,116,400 - 160,136,308 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1135,949,460 - 135,969,368 (+)NCBICelera
Cytogenetic MapXq37NCBI
TEX28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,271,265 - 154,295,211 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,271,265 - 154,295,853 (-)Ensemblhg38GRCh38
GRCh37X153,498,930 - 153,523,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,152,126 - 153,176,632 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X153,019,778 - 153,044,285NCBI
CeleraX153,658,352 - 153,684,506 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,075,134 - 142,100,798 (-)NCBIHuRef
CHM1_1X153,373,447 - 153,395,076 (-)NCBICHM1_1
T2T-CHM13v2.0X152,507,099 - 152,531,726 (-)NCBIT2T-CHM13v2.0
Tex28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,194,515 - 73,211,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,194,550 - 73,211,444 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X74,150,909 - 74,167,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,150,944 - 74,167,838 (-)Ensemblmm10GRCm38
MGSCv37X71,396,283 - 71,413,177 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X70,403,814 - 70,414,398 (-)NCBIMGSCv36mm8
CeleraX65,403,338 - 65,420,248 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.79NCBI
Tex28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955580781,339 - 791,284 (-)NCBIChiLan1.0ChiLan1.0
TEX28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,198,772 - 154,226,114 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,202,377 - 154,229,720 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,711,495 - 143,736,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TEX28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,987,726 - 122,030,718 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,986,906 - 121,996,306 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX107,316,447 - 107,359,256 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X125,129,395 - 125,172,208 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1X120,898,505 - 120,941,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,413,827 - 123,456,450 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,175,304 - 123,218,022 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tex28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,284,786 - 119,346,781 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,022,795 - 1,040,120 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,022,795 - 1,042,475 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,828,225 - 124,834,315 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X124,828,222 - 124,840,093 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103232819
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,583,639 - 128,607,682 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,583,880 - 128,601,402 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606566,464,469 - 66,485,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946718,330 - 748,957 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tex28
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X128,143,905 - 128,164,577 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:26
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000056324
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
3 17 2 1 11 25 16 1 17 9 37 1 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000086429   ⟹   ENSRNOP00000069870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX157,076,609 - 157,093,768 (-)Ensembl
mRatBN7.2 EnsemblX151,925,526 - 151,954,567 (-)Ensembl
Rnor_6.0 EnsemblX156,552,528 - 156,569,249 (+)Ensembl
RefSeq Acc Id: NM_001191103   ⟹   NP_001178032
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,077,053 - 157,096,961 (-)NCBI
mRatBN7.2X151,925,756 - 151,945,664 (-)NCBI
Rnor_6.0X156,549,341 - 156,569,249 (+)NCBI
Rnor_5.01152,281,481 - 152,310,052 (+)NCBI
Celera1135,949,460 - 135,969,368 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100082   ⟹   XP_038956010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,076,824 - 157,110,986 (-)NCBI
mRatBN7.2X151,922,210 - 151,955,902 (-)NCBI
RefSeq Acc Id: XM_039100083   ⟹   XP_038956011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,079,367 - 157,110,988 (-)NCBI
mRatBN7.2X151,928,105 - 151,955,902 (-)NCBI
RefSeq Acc Id: XM_063280312   ⟹   XP_063136382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,076,824 - 157,110,986 (-)NCBI
RefSeq Acc Id: XM_063280313   ⟹   XP_063136383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,076,824 - 157,103,285 (-)NCBI
RefSeq Acc Id: NP_001178032   ⟸   NM_001191103
- UniProtKB: F1LWH7 (UniProtKB/TrEMBL),   A6KRS7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069870   ⟸   ENSRNOT00000086429
RefSeq Acc Id: XP_038956010   ⟸   XM_039100082
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956011   ⟸   XM_039100083
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063136382   ⟸   XM_063280312
- Peptide Label: isoform X1
- UniProtKB: F1LWH7 (UniProtKB/TrEMBL),   A6KRS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136383   ⟸   XM_063280313
- Peptide Label: isoform X1
- UniProtKB: F1LWH7 (UniProtKB/TrEMBL),   A6KRS7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LWH7-F1-model_v2 AlphaFold F1LWH7 1-409 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1582832 AgrOrtholog
BioCyc Gene G2FUF-640 BioCyc
Ensembl Genes ENSRNOG00000051438 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000086429 ENTREZGENE
  ENSRNOT00000086429.3 UniProtKB/TrEMBL
InterPro Predicted_TM_coiled-coil_2 UniProtKB/TrEMBL
KEGG Report rno:690282 UniProtKB/TrEMBL
NCBI Gene 690282 ENTREZGENE
PANTHER PTHR17613 UniProtKB/TrEMBL
  PTHR17613:SF10 UniProtKB/TrEMBL
Pfam Tmemb_cc2 UniProtKB/TrEMBL
PhenoGen Tex28 PhenoGen
RatGTEx ENSRNOG00000051438 RatGTEx
UniProt A6KRS7 ENTREZGENE, UniProtKB/TrEMBL
  F1LWH7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tex28  testis expressed 28  LOC102551117  testis-specific protein TEX28-like  Data merged from RGD:7561432 737654 PROVISIONAL
2013-12-17 LOC102551117  testis-specific protein TEX28-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-11 Tex28  testis expressed 28  Tex28  testis expressed gene 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06   testis expressed gene 28  Tex28  testis expressed 28  Name updated 1299863 APPROVED
2008-03-06 Tex28  testis expressed 28  LOC690282  similar to chromosome X open reading frame 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC690282  similar to chromosome X open reading frame 2      Symbol and Name status set to provisional 70820 PROVISIONAL